# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ct7A 86 1.09e-01 1vqoZ 83 1.67e-01 1kmtA 141 5.25e-01 b.1.18.8 77442 1jm1A 204 8.59e-01 b.33.1.1 71745 1odhA 174 9.40e-01 d.239.1.1 86850 1vd4A 62 9.50e-01 1d0qA 103 1.01e+00 1d0qA g.41.3.2 45208 1rlyA 60 1.01e+00 g.41.3.1 104988 1vckA 115 1.17e+00 1l1oC 181 1.34e+00 b.40.4.3 73480 1neeA 138 1.63e+00 d.241.1.1,g.59.1.1 91841,91842 1vk6A 269 1.88e+00 d.113.1.4,d.113.1.4 100851,100852 1ee8A 266 2.17e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1ur6B 52 2.33e+00 g.44.1.1 99812 2cklB 165 3.20e+00 2fqpA 97 3.27e+00 1qxfA 66 3.84e+00 g.41.8.4 96527 1hyeA 313 4.08e+00 2cmd c.2.1.5,d.162.1.1 61400,61401 1cojA 212 4.27e+00 1avmA a.2.11.1,d.44.1.1 15737,38734 1w2lA 99 4.33e+00 1k8kA 418 4.40e+00 c.55.1.1,c.55.1.1 68305,68306 1r5mA 425 4.64e+00 1u8bA 133 4.71e+00 1upiA 225 4.77e+00 b.82.1.1 99757 1wrvA 308 5.55e+00 1iyeA 309 5.60e+00 e.17.1.1 83786 1ptq 50 5.93e+00 1ptq g.49.1.1 45349 3daaA 277 6.20e+00 1daaA e.17.1.1 43272 1ww8A 439 6.71e+00 1vqoC 246 6.95e+00 1yk4A 52 6.95e+00 1mswD 883 7.43e+00 e.8.1.3 79427 2au3A 407 7.45e+00 1fp0A 88 8.57e+00 1fp0A g.50.1.2 45361 1nykA 165 9.13e+00 b.33.1.1 86408 1rfs 139 9.36e+00 1rfs b.33.1.1 24434 1yovA 537 9.66e+00 1wxiA 275 9.70e+00 1t0bA 252 9.92e+00 c.23.16.6 106199 2cy5A 140 1.05e+01 1qwtA 255 1.06e+01 b.26.1.3 96501 1rb9 53 1.08e+01 1rb9 g.41.5.1 45214 1dxgA 36 1.08e+01 1dxgA g.41.5.2 45247 1iro 54 1.11e+01 1rb9 g.41.5.1 45223 1n6zA 105 1.14e+01 d.263.1.1 85369 1ypvA 313 1.15e+01 1pfvA 551 1.17e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 2aq6A 147 1.22e+01 2bx9A 53 1.27e+01 1wd2A 60 1.29e+01 g.44.1.1 109232 2a1rA 430 1.30e+01 1x75A 132 1.35e+01 2sak 121 1.43e+01 2sak d.15.5.1 37711 1wfeA 86 1.43e+01 1vq0A 302 1.47e+01 2bwfA 77 1.59e+01 7taa 478 1.60e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1w9aA 147 1.60e+01 1k7hA 476 1.61e+01 c.76.1.1 72101 2cklA 108 1.69e+01 1u5kA 244 1.73e+01 1uh4A 637 1.82e+01 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1ji1A 637 1.82e+01 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1u79A 129 1.83e+01 d.26.1.1 107714 1rdg 53 1.85e+01 1rb9 g.41.5.1 45221 1pk6C 129 2.03e+01 b.22.1.1 94803 1zd9A 188 2.18e+01 1k0mA 241 2.21e+01 a.45.1.1,c.47.1.5 67949,67950 1l8dA 112 2.26e+01 h.4.12.1 73687 1cv8 174 2.34e+01 1cv8 d.3.1.1 37089 1brfA 53 2.37e+01 1rb9 g.41.5.1 45236 1mr1C 99 2.40e+01 d.217.1.2 79420 1wijA 140 2.42e+01 1ew4A 106 2.46e+01 1ew4A d.82.2.1 40023 1v54F 98 2.46e+01 g.41.5.3 100327 1inp 400 2.47e+01 1inp e.7.1.1 42972 1rutX 188 2.50e+01 1i6aA 219 2.58e+01 c.94.1.1 61827 1x31D 99 2.60e+01 1lj5A 379 2.64e+01 e.1.1.1 73928 1vhqA 232 2.65e+01 c.23.16.2 100696 1t0fC 54 2.70e+01 1q35A 320 2.73e+01 c.94.1.1 95661 1r61A 207 2.76e+01 c.8.8.1 97138 1wraA 308 2.80e+01 1pvmA 184 2.81e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1ifqA 138 2.84e+01 1ifqA d.110.4.1 62350 1h3nA 878 2.85e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1lv3A 68 2.89e+01 g.39.1.9 78231 1qtwA 285 2.93e+01 1qumA c.1.15.1 29392 1mea 28 2.94e+01 g.41.1.1 45176 1ti6B 274 2.95e+01 b.3.5.1,d.58.1.5 106976,106977 1dxsA 80 2.97e+01 1cokA a.60.1.2 17944 1twfI 122 2.98e+01 1wjvA 79 2.99e+01 1woyA 500 3.02e+01 1m2tB 263 3.02e+01 b.42.2.1,b.42.2.1 84762,84763 1weoA 93 3.04e+01 1o9iA 266 3.23e+01 a.25.1.3 92671 6rxn 46 3.26e+01 1rb9 g.41.5.1 45222 1qz5A 375 3.28e+01 c.55.1.1,c.55.1.1 96614,96615 1bnb 38 3.37e+01 1bnb g.9.1.1 44592 1wjpA 107 3.40e+01 1dgfA 497 3.44e+01 1cf9A e.5.1.1 42782 1r8oB 71 3.45e+01 1m22A 503 3.46e+01 c.117.1.1 78464 1zyoA 191 3.47e+01 1zzpA 130 3.54e+01 1z60A 59 3.59e+01 1g6aA 271 3.61e+01 1btl e.3.1.1 42704 2bhvA 246 3.67e+01 1n2sA 299 3.68e+01 c.2.1.2 79857 1afp 51 3.71e+01 1afp g.26.1.1 44947 1xakA 83 3.74e+01 2fiyA 309 3.74e+01 1rmd 116 3.77e+01 1rmd g.37.1.1,g.44.1.1 45025,45322 1twfL 70 3.78e+01 1zkkA 167 3.79e+01 2a6hC 1119 3.85e+01 2avuE 192 3.86e+01 1e4cP 215 4.00e+01 2fua c.74.1.1 34969 2g8yA 385 4.01e+01 1zvnA 99 4.08e+01 1u24A 337 4.10e+01 1xu1R 42 4.14e+01 1yt5A 258 4.14e+01 1p32A 209 4.21e+01 1p32A d.25.1.1 38379 1pcxA 810 4.26e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1zin 217 4.31e+01 1zin c.37.1.1,g.41.2.1 31915,45178 2cxkA 95 4.31e+01 1mwwA 128 4.32e+01 d.80.1.4 91483 1z4rA 168 4.38e+01 1vetA 124 4.40e+01 d.110.7.1 108553 1vekA 84 4.50e+01 1r6lA 239 4.51e+01 d.14.1.4,d.101.1.1 97153,97154 1iab 200 4.57e+01 1iae d.92.1.8 40312 2fxuA 375 4.60e+01 1rttA 193 4.62e+01 c.23.5.4 105098 1vrmA 325 4.66e+01 1z6uA 150 4.72e+01 1k82A 268 4.72e+01 a.156.1.2,b.113.1.1,g.39.1.8 75866,75867,75868 1tr9A 341 4.81e+01 2b9dA 52 4.92e+01 2an1A 292 5.11e+01 1u3eM 174 5.24e+01 d.4.1.3,d.285.1.1 107640,107641 1sur 215 5.26e+01 1sur c.26.2.2 31620 1vfyA 73 5.33e+01 1vfyA g.50.1.1 45357 1a78A 134 5.34e+01 1c1lA b.29.1.3 24212 1jgsA 138 5.41e+01 a.4.5.28 66683 1zxfA 155 5.45e+01 1o12A 376 5.51e+01 b.92.1.5,c.1.9.10 80758,80759 1pjhA 280 5.56e+01 c.14.1.3 94761 1pk6B 132 5.62e+01 b.22.1.1 94802 1bfg 146 5.64e+01 1bfg b.42.1.1 25485 1hw5A 210 5.65e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 2c1xA 456 5.71e+01 1e7lA 157 5.78e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1dl0A 37 5.78e+01 1dl0A g.3.6.2 44112 2g45A 129 5.80e+01 1am2 199 5.80e+01 1am2 b.86.1.2 28381 2aheA 267 5.97e+01 2aq5A 402 5.98e+01 1ogdA 131 5.98e+01 c.133.1.1 92893 1r2zA 274 6.12e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 2aq4A 434 6.15e+01 1m2kA 249 6.21e+01 c.31.1.5 84754 2a20A 62 6.25e+01 1t2dA 322 6.26e+01 c.2.1.5,d.162.1.1 99084,99085 1qhfA 240 6.33e+01 1qhfA c.60.1.1 33960 1fjgS 93 6.33e+01 1qkfA d.28.1.1 38451 1zsqA 528 6.41e+01 1tljA 213 6.42e+01 d.282.1.1 107126 1vziA 126 6.67e+01 b.1.13.1,g.41.5.2 108967,108968 1kq1A 77 6.74e+01 b.38.1.2 72848 1lm5A 214 6.75e+01 d.211.2.1 74029 1kqfB 294 6.75e+01 d.58.1.5,f.23.22.1 75900,75901 2cszA 76 6.78e+01 1ty9A 222 6.93e+01 1zxtA 76 6.96e+01 1n12A 138 7.11e+01 b.2.3.2 79779 1ia9A 280 7.15e+01 1ia9A d.144.1.5 62113 1pk6A 133 7.15e+01 b.22.1.1 94801 1ycdA 243 7.16e+01 1y9wA 140 7.19e+01 830cA 168 7.20e+01 1ck7A d.92.1.11 40400 1eajA 126 7.21e+01 1f5wA b.1.1.1 59401 2ct0A 74 7.22e+01 1p5vA 235 7.27e+01 b.1.11.1,b.7.2.1 87812,87813 1gvjA 146 7.28e+01 a.4.5.21 90525 1t3qB 788 7.54e+01 d.41.1.1,d.133.1.1 106369,106370 2ccvA 101 7.55e+01 1wp5A 323 7.56e+01 2bibA 547 7.58e+01 2c31A 568 7.67e+01 1tqnA 486 7.72e+01 a.104.1.1 107238 1tqyB 415 7.72e+01 c.95.1.1,c.95.1.1 107247,107248 1u8zA 168 7.82e+01 1fjgL 135 7.93e+01 1fjfL b.40.4.5 25346 1uayA 242 7.95e+01 c.2.1.2 88390 1utyA 187 8.04e+01 b.147.1.1 108036 2c43A 323 8.05e+01 2faoA 309 8.10e+01 1xk5A 204 8.15e+01 1m5wA 243 8.16e+01 c.1.24.1 84836 1q33A 292 8.23e+01 d.113.1.1 95657 2ctdA 96 8.24e+01 1zud1 251 8.29e+01 1g8kB 133 8.36e+01 1g8jB b.33.1.1 24435 1wdtA 665 8.44e+01 1gq6A 313 8.49e+01 c.42.1.1 70341 1v6pA 62 8.59e+01 1aky 221 8.64e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1b25A 619 8.66e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1m2oA 768 8.70e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1ri6A 343 8.76e+01 b.69.11.1 97503 1ww9A 392 8.78e+01 1ihoA 283 8.79e+01 1ihoA c.26.1.4 62390 2fnjA 226 8.79e+01 1w6sB 74 8.94e+01 4eugA 229 9.00e+01 3eugA c.18.1.1 31019