# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1rlyA 60 1.55e-01 g.41.3.1 104988 2ct7A 86 3.56e-01 2gatA 66 6.22e-01 1gatA g.39.1.1 45102 2a1rA 430 1.06e+00 1lv3A 68 1.34e+00 g.39.1.9 78231 1ur6B 52 1.38e+00 g.44.1.1 99812 2a8jA 420 1.81e+00 1vd4A 62 1.87e+00 2cklA 108 1.91e+00 1vk6A 269 2.00e+00 d.113.1.4,d.113.1.4 100851,100852 1wd2A 60 2.00e+00 g.44.1.1 109232 1ypvA 313 2.19e+00 1tr9A 341 2.62e+00 1vq0A 302 3.37e+00 1wjvA 79 3.83e+00 1r61A 207 3.88e+00 c.8.8.1 97138 2ac3A 316 4.16e+00 1m1qA 91 4.51e+00 a.138.1.3 74419 1vqoZ 83 5.16e+00 1mr1C 99 5.73e+00 d.217.1.2 79420 1owxA 121 6.45e+00 d.58.7.1 87494 1r1a1 287 6.53e+00 1aym1 1hm9A 468 6.82e+00 b.81.1.4,c.68.1.5 65866,65867 1ydlA 79 6.85e+00 1x31D 99 7.08e+00 1ee8A 266 7.17e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 2fqpA 97 7.95e+00 1y88A 199 8.42e+00 1llmC 88 8.66e+00 g.37.1.1,g.37.1.1 91059,91060 2c30A 321 8.82e+00 1qxfA 66 9.01e+00 g.41.8.4 96527 1vckA 115 9.17e+00 1hcnA 92 9.29e+00 1hcnA g.17.1.4 44809 1ptq 50 9.62e+00 1ptq g.49.1.1 45349 2bwfA 77 1.03e+01 1yb3A 175 1.08e+01 2a20A 62 1.14e+01 1zv1A 65 1.23e+01 1w0uA 55 1.24e+01 1fiqB 350 1.37e+01 1fiqB d.87.2.1,d.145.1.3 40229,41760 1odhA 174 1.39e+01 d.239.1.1 86850 1d0qA 103 1.41e+01 1d0qA g.41.3.2 45208 1xd3A 230 1.41e+01 1afp 51 1.46e+01 1afp g.26.1.1 44947 1qqqA 264 1.47e+01 1bkpA d.117.1.1 40931 2g8mA 264 1.54e+01 2bx9A 53 1.61e+01 1dxsA 80 1.66e+01 1cokA a.60.1.2 17944 2g8oA 264 1.72e+01 1z6uA 150 1.72e+01 1kmtA 141 1.73e+01 b.1.18.8 77442 1vzyA 291 1.78e+01 1woyA 500 1.81e+01 1ejxA 100 1.83e+01 d.8.1.1 83182 1lvfA 110 1.88e+01 a.47.2.1 74280 1gk8I 140 1.97e+01 d.73.1.1 65242 1qjpA 171 1.98e+01 1bxwA f.4.1.1 43742 1cl8A 276 1.98e+01 1ckqA c.52.1.1 33230 1ku1A 230 1.99e+01 a.118.3.1 72996 1yopA 83 2.03e+01 1weoA 93 2.04e+01 1w8kA 447 2.10e+01 1dv1A 449 2.10e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1z60A 59 2.16e+01 1q5hA 147 2.20e+01 b.85.4.1 95893 1rfs 139 2.22e+01 1rfs b.33.1.1 24434 830cA 168 2.28e+01 1ck7A d.92.1.11 40400 1l8dA 112 2.34e+01 h.4.12.1 73687 1l1oC 181 2.38e+01 b.40.4.3 73480 1oapA 109 2.44e+01 d.79.7.1 92706 1ka8A 100 2.57e+01 a.4.5.20 72241 1qpaA 345 2.62e+01 1arv a.93.1.1 18585 1wfeA 86 2.64e+01 1z1zA 131 2.64e+01 1dl0A 37 2.65e+01 1dl0A g.3.6.2 44112 1vhxA 150 2.68e+01 c.55.3.8 100712 2fclA 169 2.70e+01 1lm5A 214 2.83e+01 d.211.2.1 74029 1w33A 181 2.83e+01 2d1uA 104 2.84e+01 1twfL 70 2.86e+01 1tw6A 133 2.91e+01 2avuE 192 3.10e+01 2aq6A 147 3.12e+01 1erd 40 3.17e+01 1erd a.10.1.1 16362 1jgsA 138 3.31e+01 a.4.5.28 66683 1w9aA 147 3.34e+01 2axiA 115 3.36e+01 1yk4A 52 3.41e+01 1wjpA 107 3.64e+01 1whuA 104 3.68e+01 1xccA 220 3.77e+01 1vggA 161 3.82e+01 1g73C 121 3.88e+01 1g3fA g.52.1.1 45375 1cl4A 60 4.06e+01 1cl4A g.40.1.1 45171 1hw5A 210 4.22e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1y9wA 140 4.24e+01 1zsqA 528 4.34e+01 1rutX 188 4.40e+01 1yviA 149 4.44e+01 1ycdA 243 4.48e+01 2csvA 72 4.57e+01 1vziA 126 4.60e+01 b.1.13.1,g.41.5.2 108967,108968 2fvhA 120 4.68e+01 2ftrA 108 4.72e+01 1x75A 132 4.72e+01 1extA 162 4.84e+01 1extA g.24.1.1,g.24.1.1,g.24.1.1 44900,44901,44902 1u79A 129 4.87e+01 d.26.1.1 107714 1s2dA 167 4.90e+01 c.23.14.1 98377 1yc5A 246 4.90e+01 1jsuC 84 4.97e+01 1jsuC j.55.1.1 46339 1p5zB 263 4.98e+01 c.37.1.1 87815 1ir21 140 4.99e+01 2bl9A 238 5.01e+01 2c1xA 456 5.13e+01 1moxC 50 5.24e+01 g.3.11.1 91380 1e0eA 55 5.24e+01 1wjcA a.4.10.1 59147 2ct5A 73 5.34e+01 1p5vA 235 5.37e+01 b.1.11.1,b.7.2.1 87812,87813 1w27A 714 5.38e+01 2fbhA 146 5.43e+01 1kveA 63 5.57e+01 1kveA d.70.1.2 39590 1fd3A 41 5.63e+01 1fd3A g.9.1.1 44572 1bnb 38 5.72e+01 1bnb g.9.1.1 44592 1iro 54 5.85e+01 1rb9 g.41.5.1 45223 2boqA 331 6.28e+01 2fug5 207 6.68e+01 1ln1A 214 6.72e+01 d.129.3.2 74038 1rb9 53 6.79e+01 1rb9 g.41.5.1 45214 1rdg 53 6.84e+01 1rb9 g.41.5.1 45221 1fl2A 310 6.86e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 1fiuA 286 7.07e+01 1fiuA c.52.1.10 33317 1nynA 131 7.09e+01 d.235.1.1 86410 2fy6A 143 7.14e+01 2anxA 146 7.15e+01 1tzyB 126 7.38e+01 a.22.1.1 107531 2cs8A 108 7.46e+01 2crbA 97 7.54e+01 1v54I 73 7.58e+01 f.23.3.1 100330 1guqA 348 7.73e+01 1guqA d.13.1.2,d.13.1.2 37522,37523 1jvr 137 7.84e+01 1jvr a.61.1.2 18132 1k8kA 418 7.85e+01 c.55.1.1,c.55.1.1 68305,68306 2fcwB 80 7.98e+01 1xhcA 367 8.06e+01 2avyM 117 8.12e+01 2ethA 154 8.19e+01 1j5jA 36 8.33e+01 g.3.7.2 77082 1p9bA 442 8.38e+01 c.37.1.10 94385 1m0gA 30 8.39e+01 g.46.1.1 84743 1josA 128 8.42e+01 d.52.7.1 84191 1fp2A 352 8.47e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1i76A 163 8.56e+01 1hfc d.92.1.11 61877 1q35A 320 8.56e+01 c.94.1.1 95661 1q7lA 198 8.58e+01 c.56.5.4 96044 1lpbA 95 8.61e+01 1lpbA g.3.10.1,g.3.10.1 44189,44190 1u69A 163 8.63e+01 d.32.1.7 107699 2fe5A 94 8.76e+01 2aq4A 434 8.81e+01 1i8fA 81 8.91e+01 1i8fA b.38.1.1 61959