Best Alignments for T0348

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1pft/T0348-1pft-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pft/T0348-1pft-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4600e-034.18e-06 1pft g.41.3.1
2ct7A/T0348-2ct7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ct7A/T0348-2ct7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.4725e-027.37e-06
1dl6A/T0348-1dl6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dl6A/T0348-1dl6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.5364e-012.31e-04 1dl6A g.41.3.1
1vk6A/T0348-1vk6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vk6A/T0348-1vk6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5286e-017.80e-06 d.113.1.4
d.113.1.4
1s72Z/T0348-1s72Z-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1s72Z/T0348-1s72Z-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.7694e-011.03e-04 g.41.8.1
1vckA/T0348-1vckA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vckA/T0348-1vckA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0073e+002.48e-04
1vqoZ/T0348-1vqoZ-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vqoZ/T0348-1vqoZ-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0942e+003.69e-04
1ypvA/T0348-1ypvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ypvA/T0348-1ypvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3327e+001.79e-02
1bc8C/T0348-1bc8C-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1bc8C/T0348-1bc8C-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3405e+001.06e-03 1awcA a.4.5.21
1odhA/T0348-1odhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1odhA/T0348-1odhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3725e+002.99e-02 d.239.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001