# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ct7A 86 9.19e-02 1vckA 115 6.21e-01 1ur6B 52 9.10e-01 g.44.1.1 99812 1odhA 174 1.04e+00 d.239.1.1 86850 1vd4A 62 1.12e+00 2a1rA 430 1.45e+00 1vqoZ 83 1.67e+00 1vk6A 269 1.89e+00 d.113.1.4,d.113.1.4 100851,100852 1s72Z 73 1.91e+00 g.41.8.1 105345 2a20A 62 2.00e+00 1wd2A 60 2.11e+00 g.44.1.1 109232 2fqpA 97 2.17e+00 1lm5A 214 2.67e+00 d.211.2.1 74029 1dgfA 497 3.16e+00 1cf9A e.5.1.1 42782 1tr9A 341 3.29e+00 1fiqB 350 3.47e+00 1fiqB d.87.2.1,d.145.1.3 40229,41760 830cA 168 3.64e+00 1ck7A d.92.1.11 40400 1ywzA 175 4.00e+00 1dl6A 58 4.24e+00 1dl6A g.41.3.1 45207 1z60A 59 4.28e+00 1ww8A 439 4.62e+00 1rlyA 60 4.85e+00 g.41.3.1 104988 1bc8C 93 5.57e+00 1awcA a.4.5.21 16168 1fsoA 139 6.07e+00 1rhoA b.1.18.8 60007 1kmtA 141 6.45e+00 b.1.18.8 77442 1hvyA 288 6.90e+00 1bkpA d.117.1.1 41049 1lv3A 68 6.90e+00 g.39.1.9 78231 2bwfA 77 6.91e+00 2a8mA 420 7.03e+00 1wfeA 86 7.07e+00 1i76A 163 7.25e+00 1hfc d.92.1.11 61877 1oapA 109 7.40e+00 d.79.7.1 92706 1d0qA 103 7.57e+00 1d0qA g.41.3.2 45208 1jj2Y 73 7.57e+00 1ffkW g.41.8.1 63110 1us5A 314 7.66e+00 c.94.1.1 99856 1ee8A 266 7.81e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 2a8jA 420 7.81e+00 1vq0A 302 7.91e+00 1d4xA 375 7.95e+00 1yagA c.55.1.1,c.55.1.1 59107,59108 1rutX 188 8.00e+00 2ct5A 73 8.15e+00 2sak 121 8.38e+00 2sak d.15.5.1 37711 1ejxA 100 8.59e+00 d.8.1.1 83182 2aq4A 434 8.67e+00 1qxfA 66 8.69e+00 g.41.8.4 96527 1fl2A 310 8.92e+00 1hyuA c.3.1.5,c.3.1.5 59869,59870 1i50L 70 1.04e+01 g.41.9.2 61766 1xd3A 230 1.07e+01 1rb9 53 1.07e+01 1rb9 g.41.5.1 45214 1v87A 114 1.08e+01 g.44.1.1 108422 1dgaA 375 1.10e+01 1yagA 1w0uA 55 1.14e+01 2fvhA 120 1.17e+01 2g8mA 264 1.17e+01 1erd 40 1.17e+01 1erd a.10.1.1 16362 2g8oA 264 1.20e+01 1l8dA 112 1.20e+01 h.4.12.1 73687 1l1oC 181 1.25e+01 b.40.4.3 73480 1ifqA 138 1.35e+01 1ifqA d.110.4.1 62350 1ypvA 313 1.38e+01 1evfA 264 1.40e+01 1bkpA d.117.1.1 40932 1pkhA 204 1.42e+01 b.85.4.1 94832 1zy1B 197 1.46e+01 1qqqA 264 1.49e+01 1bkpA d.117.1.1 40931 1y88A 199 1.50e+01 1p32A 209 1.54e+01 1p32A d.25.1.1 38379 1z6uA 150 1.56e+01 1wuaA 375 1.60e+01 1afp 51 1.65e+01 1afp g.26.1.1 44947 1yk4A 52 1.68e+01 1fiuA 286 1.72e+01 1fiuA c.52.1.10 33317 1twfL 70 1.77e+01 4ubpA 101 1.79e+01 1ubpA d.8.1.1 37352 1uch 230 1.80e+01 1uch d.3.1.6 37129 1yl35 60 1.81e+01 1e53A 59 1.83e+01 1e53A g.49.1.2 45356 2airB 153 1.90e+01 1nx8A 273 1.90e+01 b.82.2.8 86374 1hyuA 521 1.94e+01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1jm1A 204 2.00e+01 b.33.1.1 71745 1kdj 102 2.02e+01 1plc b.6.1.1 22864 1x75A 132 2.10e+01 1t1jA 125 2.13e+01 c.137.1.1 106249 1qz5A 375 2.13e+01 c.55.1.1,c.55.1.1 96614,96615 1d09B 153 2.14e+01 8atcB d.58.2.1,g.41.7.1 39015,45267 1uufA 369 2.15e+01 b.35.1.2,c.2.1.1 100006,100007 1wjpA 107 2.16e+01 1mr1C 99 2.21e+01 d.217.1.2 79420 1j6zA 376 2.21e+01 1yagA c.55.1.1,c.55.1.1 62667,62668 2fxuA 375 2.21e+01 1fo4A 1332 2.26e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 17910,37695,38586,40227,41416,41758 1m1qA 91 2.26e+01 a.138.1.3 74419 1yc5A 246 2.26e+01 1zsqA 528 2.27e+01 2btfA 375 2.28e+01 1yagA c.55.1.1,c.55.1.1 33429,33430 1x31D 99 2.30e+01 1mea 28 2.31e+01 g.41.1.1 45176 1rdg 53 2.33e+01 1rb9 g.41.5.1 45221 1exkA 79 2.46e+01 1exkA g.54.1.1 45384 2bx9A 53 2.47e+01 1gmxA 108 2.51e+01 c.46.1.3 65355 1wijA 140 2.53e+01 1xakA 83 2.57e+01 1q35A 320 2.60e+01 c.94.1.1 95661 1scuA 288 2.63e+01 2scuA c.2.1.8,c.23.4.1 30307,31135 1wgeA 83 2.64e+01 1dxgA 36 2.68e+01 1dxgA g.41.5.2 45247 1vor2 58 2.71e+01 1sp1 29 2.75e+01 g.37.1.1 45051 2avuE 192 2.79e+01 1gvjA 146 2.83e+01 a.4.5.21 90525 1a7i 81 2.89e+01 1b8tA g.39.1.3,g.39.1.3 45143,45144 1poc 134 2.94e+01 1poc a.133.1.1 19513 1u79A 129 2.95e+01 d.26.1.1 107714 1tg6A 277 3.09e+01 1iro 54 3.11e+01 1rb9 g.41.5.1 45223 2ezvA 269 3.16e+01 1erjA 393 3.36e+01 1erjA b.69.4.1 27660 1ayoA 130 3.40e+01 1ayoA b.2.4.1 22431 1xg1A 67 3.41e+01 1w33A 181 3.47e+01 1wjvA 79 3.53e+01 1wer 334 3.53e+01 1wer a.116.1.2 19108 1o12A 376 3.54e+01 b.92.1.5,c.1.9.10 80758,80759 1t0bA 252 3.59e+01 c.23.16.6 106199 1so2A 420 3.60e+01 a.211.1.2 98936 1xdfA 157 3.61e+01 1vzyA 291 3.64e+01 1lw3A 657 3.68e+01 b.55.1.8,c.45.1.3 91152,91153 1nigA 152 3.89e+01 a.25.2.1 85740 3pmgA 561 3.92e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1bfg 146 4.00e+01 1bfg b.42.1.1 25485 1sur 215 4.25e+01 1sur c.26.2.2 31620 2a8lA 420 4.29e+01 1w27A 714 4.33e+01 1v97A 1332 4.36e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1weoA 93 4.39e+01 2cklB 165 4.61e+01 2gatA 66 4.73e+01 1gatA g.39.1.1 45102 1nykA 165 4.79e+01 b.33.1.1 86408 1qlnA 883 4.83e+01 1cezA e.8.1.3 43111 1zyoA 191 4.85e+01 1h4rA 314 4.90e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1zxzA 197 5.10e+01 1ptq 50 5.11e+01 1ptq g.49.1.1 45349 1ywsA 82 5.30e+01 2d1pB 119 5.32e+01 1zu1A 127 5.33e+01 1z1zA 131 5.42e+01 1qvbA 481 5.50e+01 1qvbA c.1.8.4 28983 1m0gA 30 5.53e+01 g.46.1.1 84743 6rxn 46 5.59e+01 1rb9 g.41.5.1 45222 2b5iD 217 5.73e+01 2adoA 196 5.76e+01 1of5B 184 5.79e+01 d.17.4.2 86934 1jbwA 428 5.81e+01 c.59.1.2,c.72.2.2 62860,62861 1fgs 428 5.84e+01 1fgs c.59.1.2,c.72.2.2 33959,34962 1y9uA 323 5.93e+01 2fe5A 94 6.02e+01 1plq 258 6.35e+01 1plq d.131.1.2,d.131.1.2 41388,41389 1rfs 139 6.63e+01 1rfs b.33.1.1 24434 1v32A 101 6.67e+01 a.42.1.1 100277 1vr0A 247 6.67e+01 1wxiA 275 6.73e+01 1hdlA 55 6.76e+01 g.68.1.2 65808 2fiyA 309 6.79e+01 2d1uA 104 6.81e+01 2etxA 209 6.82e+01 1vziA 126 6.87e+01 b.1.13.1,g.41.5.2 108967,108968 1z6mA 175 6.90e+01 1jfrA 262 7.03e+01 1jfrA c.69.1.16 34724 1zavU 30 7.08e+01 1z92B 219 7.39e+01 1aihA 170 7.40e+01 1aihA d.163.1.1 42149 2cklA 108 7.44e+01 1k1vA 41 7.45e+01 a.37.1.1 71999 1z7mA 344 7.54e+01 1mswD 883 7.60e+01 e.8.1.3 79427 1xtqA 177 7.66e+01 1inp 400 7.86e+01 1inp e.7.1.1 42972 1a78A 134 7.86e+01 1c1lA b.29.1.3 24212 1fs1A 53 7.88e+01 1fqvA a.158.1.1 19250 1a7cA 379 7.88e+01 1sek e.1.1.1 42660 2csvA 72 7.98e+01 1ww9A 392 8.11e+01 1a04A 215 8.19e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 1shuX 182 8.29e+01 c.62.1.1 98882 1xbfA 140 8.30e+01 d.273.1.1 109538 1suuA 312 8.40e+01 b.68.10.1 99006 1yopA 83 8.69e+01 1qpaA 345 8.69e+01 1arv a.93.1.1 18585 1n9dA 199 8.76e+01 a.26.1.1 85464 1ua4A 455 8.86e+01 c.72.1.3 99128 1ku1A 230 8.93e+01 a.118.3.1 72996 1dxsA 80 8.93e+01 1cokA a.60.1.2 17944 1vphA 149 8.94e+01 1jb0F 164 8.98e+01 1jb0F f.23.16.1 62825