# List of top-scoring protein chains for t04-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yo8A 634 1.88e-01 1htqA 477 2.07e+00 d.15.9.1,d.128.1.1 71035,71036 1wc2A 181 2.14e+00 1j1lA 290 2.30e+00 b.82.1.12 90766 1xbfA 140 2.36e+00 d.273.1.1 109538 1y9wA 140 2.42e+00 1lurA 339 2.45e+00 b.30.5.4 84717 1s31A 273 2.46e+00 1kepA 348 3.32e+00 c.2.1.2 68536 1eu1A 780 3.47e+00 1dmr b.52.2.2,c.81.1.1 26903,35311 1a88A 275 3.51e+00 1brt c.69.1.12 34707 1pixA 587 3.87e+00 c.14.1.4 94708 2awpA 198 3.97e+00 2btfA 375 4.16e+00 1yagA c.55.1.1,c.55.1.1 33429,33430 1qg3A 195 4.39e+00 1qg3A b.1.2.1,b.1.2.1 21993,21994 1n62B 809 5.35e+00 d.41.1.1,d.133.1.1 80092,80093 1zs7A 190 5.64e+00 1ogdA 131 5.95e+00 c.133.1.1 92893 1jm1A 204 5.98e+00 b.33.1.1 71745 1vckA 115 6.02e+00 1rgyA 360 6.07e+00 e.3.1.1 97456 2aq5A 402 6.16e+00 1hvyA 288 6.49e+00 1bkpA d.117.1.1 41049 1yq7A 374 7.06e+00 1to6A 371 7.43e+00 c.141.1.1 107170 1ubeA 349 8.16e+00 c.37.1.11,d.48.1.1 88412,88413 1rc6A 261 8.46e+00 b.82.1.11 97287 1k0mA 241 8.47e+00 a.45.1.1,c.47.1.5 67949,67950 1id1A 153 8.94e+00 1id1A c.2.1.9 62286 1ho1A 242 9.16e+00 1ho1A c.1.24.1 61097 1h8lA 380 9.55e+00 b.3.2.1,c.56.5.1 65737,65738 2afwA 329 1.01e+01 1mswD 883 1.05e+01 e.8.1.3 79427 1hbzA 498 1.06e+01 1cf9A e.5.1.1 60937 2aaoA 166 1.08e+01 1ri6A 343 1.09e+01 b.69.11.1 97503 1qksA 567 1.10e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1wrvA 308 1.13e+01 1ynfA 458 1.17e+01 1theA 260 1.18e+01 1theB d.3.1.1 37056 1s72Z 73 1.21e+01 g.41.8.1 105345 1v8eA 224 1.22e+01 1ezm 301 1.28e+01 1hyt d.92.1.2 58980 1wyuA 438 1.28e+01 1xwfA 431 1.30e+01 1q0sA 259 1.39e+01 c.66.1.28 95509 1lokA 291 1.46e+01 c.56.5.4 78122 1w9aA 147 1.49e+01 1bg0 356 1.53e+01 1qh4A a.83.1.1,d.128.1.2 18476,41211 1xxoA 147 1.58e+01 1k8kA 418 1.58e+01 c.55.1.1,c.55.1.1 68305,68306 1lvoA 302 1.67e+01 b.47.1.4 74284 1mc0A 368 1.67e+01 d.110.2.1,d.110.2.1 78937,78938 1r6vA 671 1.70e+01 1vk6A 269 1.72e+01 d.113.1.4,d.113.1.4 100851,100852 1vqoZ 83 1.73e+01 2bb6A 414 1.74e+01 2f8lA 344 1.77e+01 1uteA 313 1.82e+01 1uteA d.159.1.1 42078 1dm0A 287 1.84e+01 1dm0A d.165.1.2 42227 1k0wA 231 1.85e+01 c.74.1.1 77220 2fimA 276 1.90e+01 2ct7A 86 1.96e+01 1qd5A 275 1.97e+01 1qd5A f.4.2.1 43748 9gafA 295 1.99e+01 1apyA d.153.1.5 42008 1kekA 1231 2.02e+01 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 68524,68525,68526,68527,68528 2aq6A 147 2.02e+01 1se8A 301 2.04e+01 b.40.4.3 105448 1fehA 574 2.06e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 2sak 121 2.07e+01 2sak d.15.5.1 37711 1efdN 266 2.08e+01 1efdN c.92.2.1 35597 1odhA 174 2.13e+01 d.239.1.1 86850 1w0pA 781 2.18e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1gppA 237 2.21e+01 b.86.1.2 76262 1ykdA 398 2.24e+01 4bcl 366 2.25e+01 4bcl b.75.1.1 27968 1y791 680 2.26e+01 1jr7A 311 2.32e+01 b.82.2.3 63255 1wd2A 60 2.34e+01 g.44.1.1 109232 1gweA 503 2.35e+01 e.5.1.1 70667 1woyA 500 2.37e+01 1ukgA 252 2.39e+01 b.29.1.1 99489 1sz6B 263 2.45e+01 1dl0A 37 2.46e+01 1dl0A g.3.6.2 44112 1e1hB 174 2.46e+01 1xl7A 612 2.48e+01 1cs0A 1073 2.55e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1qopB 396 2.56e+01 2tysB c.79.1.1 35270 3eipA 84 2.60e+01 3eipA d.26.2.1 38434 1qo7A 394 2.69e+01 1qo7A c.69.1.11 34697 1ejfA 125 2.70e+01 1ejfA b.15.1.2 23683 1v4pA 157 2.72e+01 1ooyA 481 2.73e+01 c.124.1.3,c.124.1.2 93388,93389 2auaA 224 2.78e+01 1ww8A 439 2.81e+01 1e3mA 800 2.84e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 1xdwA 331 2.93e+01 2bwrA 401 2.97e+01 2anxA 146 3.02e+01 1omp 370 3.06e+01 4mbp c.94.1.1 35778 1qhtA 775 3.08e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1kw3B 292 3.09e+01 d.32.1.3,d.32.1.3 77549,77550 2b7kA 200 3.10e+01 1jj2Y 73 3.29e+01 1ffkW g.41.8.1 63110 2ffyA 358 3.33e+01 1xw2A 405 3.42e+01 2cn3A 737 3.43e+01 1z2kA 109 3.44e+01 1ifqA 138 3.52e+01 1ifqA d.110.4.1 62350 1jb0F 164 3.59e+01 1jb0F f.23.16.1 62825 1gefA 123 3.65e+01 1gefA c.52.1.18 60465 1ui8A 638 3.67e+01 b.30.2.1,d.17.2.1,d.17.2.1 99419,99420,99421 1l0gA 358 3.68e+01 e.3.1.1 73400 1fsu 492 3.70e+01 1auk c.76.1.2 35032 2aheA 267 3.73e+01 1oy3D 282 3.74e+01 d.211.1.1 87554 1mb3A 124 3.75e+01 c.23.1.1 78907 1xwtA 405 3.76e+01 1q33A 292 3.77e+01 d.113.1.1 95657 1h12A 405 3.81e+01 a.102.1.2 83447 1z9tA 255 3.84e+01 2bdvA 231 3.88e+01 1nthA 458 3.95e+01 c.1.25.1 80730 1gvjA 146 3.95e+01 a.4.5.21 90525 1k3iA 656 4.00e+01 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1j1bA 420 4.00e+01 d.144.1.7 90758 1mroB 442 4.02e+01 1mroB a.89.1.1,d.58.31.2 18531,39449 1mtzA 293 4.03e+01 c.69.1.7 79467 1m7sA 484 4.04e+01 e.5.1.1 74574 1pi4A 358 4.07e+01 e.3.1.1 94700 1yl34 73 4.13e+01 1dgfA 497 4.15e+01 1cf9A e.5.1.1 42782 1pj5A 830 4.18e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1a9xA 1058 4.18e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1e9lA 377 4.18e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 1qnnA 191 4.21e+01 1avmA a.2.11.1,d.44.1.1 15792,38755 1p4kA 295 4.27e+01 d.153.1.5 87772 1rxwA 336 4.30e+01 a.60.7.1,c.120.1.2 98059,98060 1dl6A 58 4.33e+01 1dl6A g.41.3.1 45207 1aszB 490 4.37e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 1pvyA 227 4.38e+01 d.115.1.2 95195 1kblA 873 4.42e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1mxgA 435 4.43e+01 b.71.1.1,c.1.8.1 85193,85194 2ab0A 205 4.43e+01 1ur6B 52 4.46e+01 g.44.1.1 99812 2fqpA 97 4.47e+01 1xqwA 293 4.50e+01 1wfxA 186 4.51e+01 2b5eA 504 4.52e+01 1kdgA 546 4.54e+01 c.3.1.2,d.16.1.1 77337,77338 2d0oA 610 4.63e+01 1txnA 328 4.63e+01 1hjsA 332 4.76e+01 c.1.8.3 83492 1n3oA 252 4.79e+01 b.29.1.1 79967 1ii2A 524 4.80e+01 c.91.1.1,c.109.1.1 66146,66147 2absA 383 4.95e+01 1vclA 432 4.96e+01 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1smlA 269 4.99e+01 1smlA d.157.1.1 42053 1qwoA 442 5.15e+01 c.60.1.2 104620 1c3hA 137 5.22e+01 b.22.1.1 90405 1trb 320 5.24e+01 1trb c.3.1.5,c.3.1.5 30529,30530 1ww9A 392 5.24e+01 1dxsA 80 5.30e+01 1cokA a.60.1.2 17944 1z6uA 150 5.31e+01 2anpA 291 5.35e+01 1ukvG 453 5.38e+01 c.3.1.3,c.3.1.3,d.16.1.6 107915,107916,107917 1h7nA 342 5.40e+01 1b4kA c.1.10.3 60726 1h7wA 1025 5.42e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1v1aA 309 5.43e+01 c.72.1.1 100249 2fcwB 80 5.44e+01 1hrdA 449 5.55e+01 1k89 c.2.1.7,c.58.1.1 30219,33867 1j79A 347 5.58e+01 1j79A c.1.9.4 62675 1db1A 259 5.58e+01 1db1A a.123.1.1 19329 1zkcA 197 5.59e+01 2bcgG 453 5.60e+01 1hbnB 442 5.62e+01 1mroB a.89.1.1,d.58.31.2 60900,60901 1epwA 1290 5.67e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1y42X 392 5.71e+01 1tz9A 367 5.71e+01 c.1.15.6 107466 1wiwA 290 5.80e+01 1rwiA 270 5.81e+01 b.68.9.1 97987 1f0iA 504 6.03e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 1auiA 521 6.03e+01 1auiA d.159.1.3 42085 1oi7A 288 6.04e+01 c.2.1.8,c.23.4.1 87049,87050 2cy2A 174 6.17e+01 1hcnA 92 6.22e+01 1hcnA g.17.1.4 44809 1k4iA 233 6.28e+01 d.115.1.2 72056 1q9rB 222 6.30e+01 b.1.1.1,b.1.1.2 96307,96308 2aorA 223 6.30e+01 1han 297 6.35e+01 1han d.32.1.3,d.32.1.3 38506,38507 1y7bA 542 6.40e+01 1rlyA 60 6.40e+01 g.41.3.1 104988 1fsyA 358 6.43e+01 1gceA e.3.1.1 60016 1yk4A 52 6.47e+01 1ia6A 441 6.47e+01 a.102.1.2 76738 1miwA 404 6.48e+01 a.173.1.1,d.218.1.4 79162,79163 1l5aA 436 6.48e+01 c.43.1.2,c.43.1.2 75923,75924 1j0hA 588 6.51e+01 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1vk4A 298 6.56e+01 c.72.1.1 100850 2kfnA 605 6.65e+01 1xwl c.55.3.5,e.8.1.1 33682,42975 1g8kB 133 6.65e+01 1g8jB b.33.1.1 24435 1yd0A 96 6.66e+01 2fflA 756 6.68e+01 1m3sA 186 6.71e+01 c.80.1.3 78573 1v5wA 343 6.80e+01 c.37.1.11 108387 1jfrA 262 6.80e+01 1jfrA c.69.1.16 34724 1r6lA 239 6.87e+01 d.14.1.4,d.101.1.1 97153,97154 1w3jA 468 6.90e+01 c.1.8.4 109156 1pp0A 199 6.94e+01 d.103.1.1 104211 1ex1A 605 7.12e+01 1ex1A c.1.8.7,c.23.11.1 29013,31347 1rjoA 646 7.13e+01 1d2tA 231 7.22e+01 1d2tA a.111.1.1 19052 1j4aA 333 7.26e+01 c.2.1.4,c.23.12.1 71502,71503 1snlA 103 7.45e+01 a.39.1.7 105820 1x31D 99 7.51e+01 1hzdA 272 7.51e+01 c.14.1.3 65969 1nynA 131 7.53e+01 d.235.1.1 86410 1ywmA 200 7.55e+01 1l1oC 181 7.55e+01 b.40.4.3 73480 1cxpA 104 7.59e+01 1d2vA a.93.1.2 18695 1oihA 301 7.62e+01 b.82.2.5 93051 1n67A 359 7.68e+01 b.2.3.4,b.2.3.4 85354,85355 1ex0A 731 7.74e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1zm8A 259 7.82e+01 1nwzA 125 7.83e+01 d.110.3.1 86370 1pjr 724 7.84e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1vd6A 224 7.95e+01 1i0dA 332 7.97e+01 1pscA c.1.9.3 61487 1vjfA 180 7.97e+01 d.116.1.1 100809 1qh4A 380 7.99e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1crzA 403 8.03e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 3pyp 125 8.09e+01 3pyp d.110.3.1 40897 1cyx 205 8.23e+01 1cyx b.6.1.2 23023 1v7oA 165 8.32e+01 d.67.1.2 100480 1d2vA 104 8.35e+01 1d2vA a.93.1.2 18697 1a78A 134 8.36e+01 1c1lA b.29.1.3 24212 2axcA 264 8.37e+01 1zyoA 191 8.39e+01 1zbpA 273 8.42e+01 1yliA 153 8.47e+01 1zdnA 158 8.51e+01 1ci9A 392 8.56e+01 e.3.1.1 64767 2c3vA 102 8.57e+01 1yopA 83 8.75e+01 1uy4A 145 8.75e+01 b.18.1.10 108131 2a20A 62 8.80e+01 1zfjA 491 8.84e+01 1ak5 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1r5mA 425 8.84e+01 1qtwA 285 8.99e+01 1qumA c.1.15.1 29392