Best Alignments for T0348

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1pft/T0348-1pft-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pft/T0348-1pft-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2737e-022.88e-05 1pft g.41.3.1
2ct7A/T0348-2ct7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ct7A/T0348-2ct7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.7362e-011.47e-02
1s72Z/T0348-1s72Z-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1s72Z/T0348-1s72Z-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.3923e-011.59e-02 g.41.8.1
1vqoZ/T0348-1vqoZ-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vqoZ/T0348-1vqoZ-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1297e+001.13e-02
1dl6A/T0348-1dl6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dl6A/T0348-1dl6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5019e+001.13e-03 1dl6A g.41.3.1
1vk6A/T0348-1vk6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vk6A/T0348-1vk6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4909e+001.85e-05 d.113.1.4
d.113.1.4
1vd4A/T0348-1vd4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vd4A/T0348-1vd4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.7413e+002.62e-03
2g2kA/T0348-2g2kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2g2kA/T0348-2g2kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.5771e+004.41e-02
1jm7A/T0348-1jm7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jm7A/T0348-1jm7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6335e+003.04e+02 g.44.1.1
1vckA/T0348-1vckA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vckA/T0348-1vckA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.1235e+007.06e-03

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001