# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1pft 50 9.35e-03 1pft g.41.3.1 45206 1s72Z 73 4.19e-01 g.41.8.1 105345 1vqoZ 83 5.52e-01 2ct7A 86 7.94e-01 1ww8A 439 1.08e+00 1ffkW 73 1.16e+00 1ffkW g.41.8.1 45315 1vk6A 269 2.30e+00 d.113.1.4,d.113.1.4 100851,100852 1jj2Y 73 3.33e+00 1ffkW g.41.8.1 63110 1vckA 115 5.02e+00 1odhA 174 5.10e+00 d.239.1.1 86850 2a8mA 420 5.15e+00 1yovA 537 6.22e+00 1wd2A 60 6.78e+00 g.44.1.1 109232 1x75A 132 7.97e+00 2aq4A 434 8.97e+00 2a8jA 420 9.03e+00 1rlyA 60 9.56e+00 g.41.3.1 104988 2g2kA 170 9.58e+00 1adn 92 1.22e+01 1adn g.48.1.1 45348 1i5hW 50 1.23e+01 1i5hW b.72.1.1 61785 1dsvA 31 1.24e+01 1dsvA g.40.1.1 45174 1dgfA 497 1.28e+01 1cf9A e.5.1.1 42782 1dghB 498 1.29e+01 1cf9A e.5.1.1 42791 1k81A 36 1.29e+01 g.59.1.1 72136 1hvyA 288 1.29e+01 1bkpA d.117.1.1 41049 1neeA 138 1.42e+01 d.241.1.1,g.59.1.1 91841,91842 1wpkA 146 1.49e+01 1qvbA 481 1.51e+01 1qvbA c.1.8.4 28983 1n9dA 199 1.52e+01 a.26.1.1 85464 1mswD 883 1.55e+01 e.8.1.3 79427 1dl6A 58 1.58e+01 1dl6A g.41.3.1 45207 1bor 56 1.60e+01 1bor g.44.1.1 45324 1zgwA 139 1.61e+01 1e4uA 78 1.70e+01 1e4uA g.44.1.1 59231 1jm7A 112 1.86e+01 g.44.1.1 66880 1wrvA 308 1.90e+01 1h38C 883 1.95e+01 e.8.1.3 76627 1h38D 883 1.96e+01 e.8.1.3 76628 1jm1A 204 1.97e+01 b.33.1.1 71745 1h38B 883 1.97e+01 e.8.1.3 76626 1qxfA 66 2.01e+01 g.41.8.4 96527 1bc8C 93 2.09e+01 1awcA a.4.5.21 16168 1yk4A 52 2.22e+01 1ogdA 131 2.52e+01 c.133.1.1 92893 1ypvA 313 2.53e+01 1c76A 136 2.61e+01 2sak d.15.5.1 37718 1nx8A 273 2.76e+01 b.82.2.8 86374 7catA 506 2.77e+01 1cf9A e.5.1.1 42781 1plr 258 2.80e+01 1plq d.131.1.2,d.131.1.2 41390,41391 1ptq 50 2.80e+01 1ptq g.49.1.1 45349 1y9wA 140 2.92e+01 4rxn 54 2.93e+01 1rb9 g.41.5.1 45226 5rxn 54 2.93e+01 1rb9 g.41.5.1 45225 1l1oC 181 2.93e+01 b.40.4.3 73480 1qyp 57 2.95e+01 1qyp g.41.3.1 45205 1exkA 79 3.00e+01 1exkA g.54.1.1 45384 2a1rA 430 3.21e+01 1xxoA 147 3.21e+01 1rb9 53 3.21e+01 1rb9 g.41.5.1 45214 1fp0A 88 3.24e+01 1fp0A g.50.1.2 45361 1dl0A 37 3.25e+01 1dl0A g.3.6.2 44112 1iq3A 110 3.27e+01 1iq3A a.39.1.6 62640 1w9aA 147 3.30e+01 2cjsC 62 3.31e+01 1far 52 3.32e+01 1far g.49.1.1 45351 2tscA 264 3.33e+01 1bkpA d.117.1.1 40952 2a20A 62 3.36e+01 1gnf 46 3.37e+01 1gatA g.39.1.1 45107 1faq 52 3.38e+01 1far g.49.1.1 45352 1jgsA 138 3.40e+01 a.4.5.28 66683 1tr9A 341 3.42e+01 8rxnA 52 3.44e+01 1rb9 g.41.5.1 45215 1sp1 29 3.56e+01 g.37.1.1 45051 1ee8A 266 3.75e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1tbn 82 3.78e+01 1ptq g.49.1.1 45354 1f62A 51 3.87e+01 1f62A g.50.1.2 45360 1iro 54 3.98e+01 1rb9 g.41.5.1 45223 2a9fA 398 4.06e+01 1m22A 503 4.06e+01 c.117.1.1 78464 830cA 168 4.07e+01 1ck7A d.92.1.11 40400 1ajw 145 4.08e+01 1rhoA b.1.18.8 21905 1uby 367 4.09e+01 1uby a.128.1.1 19435 1fps 348 4.14e+01 1uby a.128.1.1 19436 2aq6A 147 4.16e+01 1ssn 136 4.18e+01 2sak d.15.5.1 37720 1ab4 477 4.19e+01 1ab4 e.11.1.1 43251 1fujA 221 4.21e+01 1a7s b.47.1.2 26349 1b2jA 54 4.25e+01 1rb9 g.41.5.1 45231 1t0bA 252 4.47e+01 c.23.16.6 106199 1etc 110 4.63e+01 1awcA a.4.5.21 16162 1g25A 65 4.71e+01 1g25A g.44.1.1 45325 1j6uA 469 4.73e+01 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1jfrA 262 4.75e+01 1jfrA c.69.1.16 34724 1p9rA 418 4.84e+01 c.37.1.11 94399 1deoA 233 4.89e+01 1deoA c.23.10.4 31345 1i76A 163 4.91e+01 1hfc d.92.1.11 61877 1bzsA 165 4.92e+01 1hfc d.92.1.11 40348 1mea 28 4.94e+01 g.41.1.1 45176 1zzpA 130 4.99e+01 1vd4A 62 5.05e+01 1dx8A 70 5.16e+01 1rb9 g.41.5.1 45243 1tz9A 367 5.17e+01 c.1.15.6 107466 1frvA 264 5.21e+01 2frvA e.19.1.1 43308 1d0qA 103 5.21e+01 1d0qA g.41.3.2 45208 1k7cA 233 5.22e+01 c.23.10.4 68267 1a67 108 5.33e+01 1cewI d.17.1.2 38000 1vor2 58 5.36e+01 1rdg 53 5.42e+01 1rb9 g.41.5.1 45221 1r6lA 239 5.44e+01 d.14.1.4,d.101.1.1 97153,97154 2bydA 323 5.45e+01 1a90 108 5.45e+01 1cewI d.17.1.2 38001 1gatA 60 5.57e+01 1gatA g.39.1.1 45106 1v87A 114 5.64e+01 g.44.1.1 108422 1qdlA 422 5.66e+01 1qdlA d.161.1.1 42088 1aiqA 264 5.68e+01 1bkpA d.117.1.1 40967 1f4lA 551 5.71e+01 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 59648,59649,59650 1pfvA 551 5.72e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 2bx9A 53 5.72e+01 1dpo 223 5.73e+01 5ptp b.47.1.2 25975 3eugA 229 5.80e+01 3eugA c.18.1.1 31018 4eugA 229 5.83e+01 3eugA c.18.1.1 31019 1qqtA 551 5.83e+01 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 16923,31590,45175 1eugA 229 5.84e+01 3eugA c.18.1.1 31021 1wwcA 118 5.86e+01 1wwcA b.1.1.4 21778 1wijA 140 5.87e+01 1pcn 93 5.93e+01 1lpbA g.3.10.1,g.3.10.1 44199,44200 1euiA 228 5.99e+01 3eugA c.18.1.1 31028 1qlnA 883 6.02e+01 1cezA e.8.1.3 43111 1flzA 228 6.03e+01 3eugA c.18.1.1 31027 1a85A 158 6.12e+01 1hfc d.92.1.11 40355 1qbjA 81 6.13e+01 1qbjA a.4.5.19 16155 1cezA 883 6.24e+01 1cezA e.8.1.3 43110 2gatA 66 6.31e+01 1gatA g.39.1.1 45102 3gatA 66 6.31e+01 1gatA g.39.1.1 45103 1k0mA 241 6.32e+01 a.45.1.1,c.47.1.5 67949,67950 1yl35 60 6.39e+01 1ys4A 354 6.56e+01 1q35A 320 6.57e+01 c.94.1.1 95661 1qqqA 264 6.60e+01 1bkpA d.117.1.1 40931 2g8mA 264 6.66e+01 1rutX 188 6.69e+01 1gvjA 146 6.85e+01 a.4.5.21 90525 1evfA 264 6.86e+01 1bkpA d.117.1.1 40932 1vq0A 302 6.88e+01 2c1xA 456 6.88e+01 1ur6B 52 6.95e+01 g.44.1.1 99812 1pir 124 6.99e+01 1poa a.133.1.2 19611 1k3eA 156 7.13e+01 d.198.1.1 68103 2sak 121 7.30e+01 2sak d.15.5.1 37711 1plq 258 7.37e+01 1plq d.131.1.2,d.131.1.2 41388,41389 2cdqA 510 7.46e+01 2acjA 66 7.48e+01 1z4rA 168 7.49e+01 1cxvA 164 7.49e+01 1ck7A d.92.1.11 40404 1ywzA 175 7.57e+01 1utyA 187 7.58e+01 b.147.1.1 108036 1ojaA 520 7.61e+01 c.3.1.2,d.16.1.5 93096,93097 1s3eA 520 7.62e+01 c.3.1.2,d.16.1.5 98426,98427 1rhoC 145 7.66e+01 1rhoA b.1.18.8 21901 1jx4A 352 7.80e+01 d.240.1.1,e.8.1.7 90378,90379 5gcnA 166 7.87e+01 1yghA d.108.1.1 40807 1theB 260 7.96e+01 1theB d.3.1.1 37057 1bq8A 54 8.06e+01 1rb9 g.41.5.1 45237 1bq9A 54 8.06e+01 1rb9 g.41.5.1 45238 1m3vA 122 8.11e+01 g.39.1.3,g.39.1.3 84794,84795 1theA 260 8.14e+01 1theB d.3.1.1 37056 1gp1A 198 8.16e+01 1gp1A c.47.1.10 33059 1jbjA 186 8.23e+01 b.1.1.4,b.1.1.4 66482,66483 1cokA 68 8.28e+01 1cokA a.60.1.2 17945 1kkeA 210 8.35e+01 b.21.1.2,b.83.1.2 68669,68670 1j6zA 376 8.36e+01 1yagA c.55.1.1,c.55.1.1 62667,62668 1brfA 53 8.45e+01 1rb9 g.41.5.1 45236 2a8lA 420 8.48e+01 1e53A 59 8.51e+01 1e53A g.49.1.2 45356 1wfeA 86 8.51e+01 1wxiA 275 8.52e+01 1udg 244 8.63e+01 3eugA c.18.1.1 31016 1q68B 29 8.68e+01 j.108.1.1 95963 2aegA 268 8.75e+01 1u79A 129 8.76e+01 d.26.1.1 107714 1ty9A 222 8.80e+01 1yub 245 8.91e+01 2ercA c.66.1.24 34219 2cx1A 187 8.96e+01 1zs7A 190 8.96e+01