Best Alignments for T0348

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1pft/T0348-1pft-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1pft/T0348-1pft-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5100e-021.62e-05 1pft g.41.3.1
2ct7A/T0348-2ct7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ct7A/T0348-2ct7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5714e-012.67e-02
1vqoZ/T0348-1vqoZ-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vqoZ/T0348-1vqoZ-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.7411e-013.85e-04
1s72Z/T0348-1s72Z-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1s72Z/T0348-1s72Z-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8600e+003.43e-04 g.41.8.1
1vk6A/T0348-1vk6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vk6A/T0348-1vk6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7543e+001.55e-05 d.113.1.4
d.113.1.4
1vckA/T0348-1vckA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vckA/T0348-1vckA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8259e+008.97e-04
1odhA/T0348-1odhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1odhA/T0348-1odhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1758e+005.29e-02 d.239.1.1
1wd2A/T0348-1wd2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wd2A/T0348-1wd2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3423e+007.92e+01 g.44.1.1
2g2kA/T0348-2g2kA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2g2kA/T0348-2g2kA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.1833e+002.16e-02
1yk4A/T0348-1yk4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yk4A/T0348-1yk4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.0064e+001.10e-01

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001