# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ct7A 86 1.44e-01 2fqpA 97 4.05e-01 1vqoZ 83 5.26e-01 1vckA 115 6.52e-01 1vd4A 62 1.31e+00 1vk6A 269 1.53e+00 d.113.1.4,d.113.1.4 100851,100852 1ur6B 52 1.67e+00 g.44.1.1 99812 1odhA 174 1.87e+00 d.239.1.1 86850 1lm5A 214 1.91e+00 d.211.2.1 74029 1ww8A 439 1.97e+00 2g8oA 264 2.06e+00 2a20A 62 2.24e+00 2g8mA 264 2.29e+00 1ywzA 175 2.30e+00 1wd2A 60 2.54e+00 g.44.1.1 109232 1qqqA 264 2.69e+00 1bkpA d.117.1.1 40931 2bwfA 77 2.86e+00 1rlyA 60 3.35e+00 g.41.3.1 104988 1fiqB 350 3.58e+00 1fiqB d.87.2.1,d.145.1.3 40229,41760 2a8jA 420 3.82e+00 1tr9A 341 4.06e+00 1w0uA 55 4.56e+00 1y88A 199 4.57e+00 1z60A 59 4.94e+00 830cA 168 5.07e+00 1ck7A d.92.1.11 40400 2a1rA 430 5.77e+00 1l1oC 181 6.10e+00 b.40.4.3 73480 1vq0A 302 6.20e+00 2cjsC 62 6.29e+00 1us5A 314 6.31e+00 c.94.1.1 99856 1oapA 109 6.45e+00 d.79.7.1 92706 1kmtA 141 6.60e+00 b.1.18.8 77442 1l8dA 112 6.60e+00 h.4.12.1 73687 1dgfA 497 6.88e+00 1cf9A e.5.1.1 42782 1lv3A 68 6.96e+00 g.39.1.9 78231 1z6uA 150 7.27e+00 1i76A 163 7.63e+00 1hfc d.92.1.11 61877 2fvhA 120 7.69e+00 1wfeA 86 7.74e+00 1poc 134 7.90e+00 1poc a.133.1.1 19513 2g2kA 170 8.32e+00 1ejxA 100 8.58e+00 d.8.1.1 83182 1ypvA 313 8.68e+00 1rb9 53 8.80e+00 1rb9 g.41.5.1 45214 1yk4A 52 8.98e+00 1ee8A 266 9.44e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1rutX 188 1.04e+01 1erd 40 1.18e+01 1erd a.10.1.1 16362 1pkhA 204 1.27e+01 b.85.4.1 94832 1fl2A 310 1.28e+01 1hyuA c.3.1.5,c.3.1.5 59869,59870 2dasA 62 1.33e+01 1rdg 53 1.37e+01 1rb9 g.41.5.1 45221 4ubpA 101 1.37e+01 1ubpA d.8.1.1 37352 1z1zA 131 1.38e+01 1w27A 714 1.39e+01 1jm1A 204 1.44e+01 b.33.1.1 71745 1wjvA 79 1.45e+01 1m1qA 91 1.46e+01 a.138.1.3 74419 1wijA 140 1.48e+01 2sak 121 1.48e+01 2sak d.15.5.1 37711 1ayoA 130 1.56e+01 1ayoA b.2.4.1 22431 1iro 54 1.58e+01 1rb9 g.41.5.1 45223 1qxfA 66 1.59e+01 g.41.8.4 96527 1hdlA 55 1.60e+01 g.68.1.2 65808 1d0qA 103 1.65e+01 1d0qA g.41.3.2 45208 1kdj 102 1.65e+01 1plc b.6.1.1 22864 1ifqA 138 1.69e+01 1ifqA d.110.4.1 62350 1u79A 129 1.79e+01 d.26.1.1 107714 1a7i 81 1.82e+01 1b8tA g.39.1.3,g.39.1.3 45143,45144 1wjpA 107 1.90e+01 1v32A 101 1.91e+01 a.42.1.1 100277 2d1uA 104 1.95e+01 1sur 215 1.99e+01 1sur c.26.2.2 31620 1afp 51 2.00e+01 1afp g.26.1.1 44947 1mea 28 2.01e+01 g.41.1.1 45176 1p32A 209 2.03e+01 1p32A d.25.1.1 38379 1xd3A 230 2.03e+01 1xakA 83 2.03e+01 1fiuA 286 2.08e+01 1fiuA c.52.1.10 33317 2ezvA 269 2.16e+01 1t1jA 125 2.17e+01 c.137.1.1 106249 1zsqA 528 2.18e+01 1twfL 70 2.29e+01 1mr1C 99 2.33e+01 d.217.1.2 79420 2ct5A 73 2.44e+01 1uufA 369 2.52e+01 b.35.1.2,c.2.1.1 100006,100007 2airB 153 2.53e+01 1t0bA 252 2.57e+01 c.23.16.6 106199 2avuE 192 2.68e+01 1dxgA 36 2.69e+01 1dxgA g.41.5.2 45247 1o12A 376 2.76e+01 b.92.1.5,c.1.9.10 80758,80759 1weoA 93 2.81e+01 2bx9A 53 2.93e+01 2fe5A 94 3.12e+01 1x75A 132 3.16e+01 1w33A 181 3.26e+01 1yc5A 246 3.26e+01 2gatA 66 3.49e+01 1gatA g.39.1.1 45102 1s9rA 410 3.58e+01 d.126.1.4 98758 1q35A 320 3.60e+01 c.94.1.1 95661 1a78A 134 3.61e+01 1c1lA b.29.1.3 24212 2aq4A 434 3.64e+01 1xdfA 157 3.68e+01 1brfA 53 3.74e+01 1rb9 g.41.5.1 45236 1erjA 393 3.75e+01 1erjA b.69.4.1 27660 1qz5A 375 3.82e+01 c.55.1.1,c.55.1.1 96614,96615 1bfg 146 3.90e+01 1bfg b.42.1.1 25485 1gmxA 108 3.90e+01 c.46.1.3 65355 1vzyA 291 4.00e+01 1nigA 152 4.03e+01 a.25.2.1 85740 1ek9A 428 4.14e+01 1ek9A f.5.1.1 43809 1yopA 83 4.28e+01 6rxn 46 4.39e+01 1rb9 g.41.5.1 45222 2ac3A 316 4.68e+01 1zu1A 127 4.68e+01 1q33A 292 4.70e+01 d.113.1.1 95657 2fxuA 375 4.76e+01 1mswD 883 4.78e+01 e.8.1.3 79427 2cklB 165 4.78e+01 1bs0A 384 4.79e+01 1bs0A c.67.1.4 34490 1xesA 413 4.86e+01 1ptq 50 5.04e+01 1ptq g.49.1.1 45349 1i88A 389 5.08e+01 c.95.1.2,c.95.1.2 66070,66071 3pmgA 561 5.30e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1w2lA 99 5.36e+01 2gpiA 91 5.40e+01 2d1pB 119 5.42e+01 1ku1A 230 5.43e+01 a.118.3.1 72996 1pieA 419 5.47e+01 d.14.1.5,d.58.26.7 94706,94707 1qpaA 345 5.48e+01 1arv a.93.1.1 18585 2cklA 108 5.59e+01 1nv8A 284 5.96e+01 c.66.1.30 86224 1cy5A 97 6.08e+01 1cy5A a.77.1.3 18430 1m0gA 30 6.09e+01 g.46.1.1 84743 1shuX 182 6.09e+01 c.62.1.1 98882 1lj5A 379 6.16e+01 e.1.1.1 73928 1vphA 149 6.31e+01 1je0A 236 6.34e+01 c.56.2.1 66581 1cbs 137 6.45e+01 1hmt b.60.1.2 27201 1rfs 139 6.72e+01 1rfs b.33.1.1 24434 1aihA 170 6.79e+01 1aihA d.163.1.1 42149 2glfA 450 7.21e+01 2fiyA 309 7.25e+01 1jfrA 262 7.26e+01 1jfrA c.69.1.16 34724 1xpa 122 7.30e+01 1xpa a.6.1.2,g.39.1.5 16308,45151 1qbjA 81 7.38e+01 1qbjA a.4.5.19 16155 2d8vA 67 7.41e+01 1sfp 114 7.43e+01 1sfp b.23.1.1 23895 1ka8A 100 7.54e+01 a.4.5.20 72241 1nykA 165 7.58e+01 b.33.1.1 86408 1nkoA 132 7.65e+01 b.1.1.1 85829 1cl4A 60 7.74e+01 1cl4A g.40.1.1 45171 1wer 334 7.76e+01 1wer a.116.1.2 19108 1y9uA 323 7.80e+01 2tct 207 8.03e+01 2tct a.4.1.9,a.121.1.1 16063,19240 1sz2A 332 8.13e+01 2fqaA 27 8.23e+01 1o7sA 127 8.25e+01 b.1.1.1 86644 2hrvA 142 8.37e+01 2hrvA b.47.1.4 26429 1v97A 1332 8.52e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1e0eA 55 8.57e+01 1wjcA a.4.10.1 59147 1yuiA 54 8.62e+01 1yuiA g.37.1.1 45073 1ldjB 90 8.72e+01 g.44.1.1 73850 2c1xA 456 8.79e+01 2fk4A 75 8.86e+01 2b5iD 217 8.96e+01 1extA 162 9.00e+01 1extA g.24.1.1,g.24.1.1,g.24.1.1 44900,44901,44902