# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vqoZ 83 1.09e-01 2ct7A 86 2.67e-01 1ww8A 439 1.32e+00 1vk6A 269 1.40e+00 d.113.1.4,d.113.1.4 100851,100852 1odhA 174 1.40e+00 d.239.1.1 86850 1vckA 115 1.61e+00 1y9wA 140 2.91e+00 2g2kA 170 3.44e+00 1wd2A 60 3.55e+00 g.44.1.1 109232 1rlyA 60 3.64e+00 g.41.3.1 104988 1ypvA 313 4.82e+00 1qxfA 66 6.09e+00 g.41.8.4 96527 1mswD 883 6.29e+00 e.8.1.3 79427 1x75A 132 6.68e+00 1wrvA 308 6.87e+00 1jm1A 204 7.34e+00 b.33.1.1 71745 1yk4A 52 7.88e+00 2g8mA 264 7.97e+00 1qqqA 264 7.97e+00 1bkpA d.117.1.1 40931 1ee8A 266 8.14e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1l1oC 181 8.65e+00 b.40.4.3 73480 2aq4A 434 9.13e+00 1z4rA 168 1.02e+01 1ogdA 131 1.13e+01 c.133.1.1 92893 2g8oA 264 1.21e+01 1yovA 537 1.28e+01 1d0qA 103 1.31e+01 1d0qA g.41.3.2 45208 1w9aA 147 1.35e+01 1neeA 138 1.39e+01 d.241.1.1,g.59.1.1 91841,91842 1rb9 53 1.45e+01 1rb9 g.41.5.1 45214 2a8jA 420 1.50e+01 1ptq 50 1.53e+01 1ptq g.49.1.1 45349 2a1rA 430 1.59e+01 1dl0A 37 1.69e+01 1dl0A g.3.6.2 44112 2aq6A 147 1.70e+01 1dgfA 497 1.72e+01 1cf9A e.5.1.1 42782 1iro 54 1.73e+01 1rb9 g.41.5.1 45223 1fp0A 88 1.82e+01 1fp0A g.50.1.2 45361 1vd4A 62 1.84e+01 1k7cA 233 1.91e+01 c.23.10.4 68267 1kmtA 141 1.92e+01 b.1.18.8 77442 2fqpA 97 1.95e+01 1p5vA 235 2.04e+01 b.1.11.1,b.7.2.1 87812,87813 1rdg 53 2.09e+01 1rb9 g.41.5.1 45221 1t0bA 252 2.11e+01 c.23.16.6 106199 1ywzA 175 2.14e+01 1tz9A 367 2.22e+01 c.1.15.6 107466 1r6lA 239 2.23e+01 d.14.1.4,d.101.1.1 97153,97154 1dxgA 36 2.26e+01 1dxgA g.41.5.2 45247 2bx9A 53 2.32e+01 1i76A 163 2.44e+01 1hfc d.92.1.11 61877 1utyA 187 2.45e+01 b.147.1.1 108036 1yc5A 246 2.46e+01 1jfrA 262 2.47e+01 1jfrA c.69.1.16 34724 1ur6B 52 2.53e+01 g.44.1.1 99812 830cA 168 2.56e+01 1ck7A d.92.1.11 40400 1wijA 140 2.58e+01 1m22A 503 2.58e+01 c.117.1.1 78464 1brfA 53 2.63e+01 1rb9 g.41.5.1 45236 1tr9A 341 2.63e+01 2sak 121 2.63e+01 2sak d.15.5.1 37711 2g8yA 385 2.75e+01 1zu0A 529 2.86e+01 1zzpA 130 2.93e+01 2cjsC 62 3.00e+01 1wfeA 86 3.12e+01 1pfvA 551 3.12e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1jgsA 138 3.31e+01 a.4.5.28 66683 2a20A 62 3.36e+01 1lm5A 214 3.48e+01 d.211.2.1 74029 2dasA 62 3.51e+01 1l8dA 112 3.54e+01 h.4.12.1 73687 4eugA 229 3.55e+01 3eugA c.18.1.1 31019 2c1xA 456 3.56e+01 1mea 28 3.59e+01 g.41.1.1 45176 2avuE 192 3.75e+01 1qbjA 81 3.76e+01 1qbjA a.4.5.19 16155 1ty9A 222 3.79e+01 1qz5A 375 3.80e+01 c.55.1.1,c.55.1.1 96614,96615 1vq0A 302 3.83e+01 1u00A 227 3.96e+01 1q35A 320 4.05e+01 c.94.1.1 95661 2cklB 165 4.06e+01 1hyeA 313 4.17e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1qwtA 255 4.20e+01 b.26.1.3 96501 1wwcA 118 4.28e+01 1wwcA b.1.1.4 21778 1cojA 212 4.34e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1inp 400 4.36e+01 1inp e.7.1.1 42972 1qstA 160 4.44e+01 1yghA d.108.1.1 40804 6rxn 46 4.48e+01 1rb9 g.41.5.1 45222 1z6uA 150 4.60e+01 1q68B 29 4.61e+01 j.108.1.1 95963 1ys4A 354 4.69e+01 1r5mA 425 4.81e+01 1zx2A 147 4.81e+01 1cv8 174 4.84e+01 1cv8 d.3.1.1 37089 1u8bA 133 4.86e+01 1a78A 134 5.08e+01 1c1lA b.29.1.3 24212 1m2kA 249 5.12e+01 c.31.1.5 84754 1zyoA 191 5.22e+01 1q33A 292 5.24e+01 d.113.1.1 95657 2cklA 108 5.32e+01 1jx4A 352 5.34e+01 d.240.1.1,e.8.1.7 90378,90379 2gatA 66 5.34e+01 1gatA g.39.1.1 45102 1sfp 114 5.43e+01 1sfp b.23.1.1 23895 1hw5A 210 5.54e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1y88A 199 5.56e+01 2fxuA 375 5.70e+01 1twfI 122 5.76e+01 1p94A 76 5.87e+01 a.43.1.3 94380 2cxkA 95 5.88e+01 1mr1C 99 5.91e+01 d.217.1.2 79420 2aegA 268 5.97e+01 1v54F 98 5.99e+01 g.41.5.3 100327 1ifqA 138 6.02e+01 1ifqA d.110.4.1 62350 1p32A 209 6.04e+01 1p32A d.25.1.1 38379 2glfA 450 6.07e+01 1woyA 500 6.13e+01 1wjpA 107 6.23e+01 1g9pA 45 6.31e+01 g.3.6.2 65171 1ysjA 404 6.31e+01 2cdqA 510 6.49e+01 1juvA 193 6.63e+01 c.71.1.1 90912 3daaA 277 6.66e+01 1daaA e.17.1.1 43272 2awpA 198 6.71e+01 2booA 247 6.75e+01 7taa 478 6.86e+01 7taa b.71.1.1,c.1.8.1 27778,28765 2fqaA 27 6.97e+01 1v6pA 62 7.02e+01 1u24A 337 7.12e+01 1k0mA 241 7.12e+01 a.45.1.1,c.47.1.5 67949,67950 1b77A 228 7.14e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1iyeA 309 7.33e+01 e.17.1.1 83786 1nox 205 7.43e+01 1nox d.90.1.1 40242 1rmd 116 7.74e+01 1rmd g.37.1.1,g.44.1.1 45025,45322 2cy2A 174 7.75e+01 1lv3A 68 7.75e+01 g.39.1.9 78231 1weoA 93 7.76e+01 1gpc 218 7.79e+01 1gpc b.40.4.7 25393 2fpeA 62 7.91e+01 1wjvA 79 7.91e+01 1dxsA 80 7.93e+01 1cokA a.60.1.2 17944 1u3eM 174 7.99e+01 d.4.1.3,d.285.1.1 107640,107641 1lr5A 163 8.12e+01 b.82.1.2 74215 2gu2A 312 8.13e+01 1kkeA 210 8.15e+01 b.21.1.2,b.83.1.2 68669,68670 1u79A 129 8.18e+01 d.26.1.1 107714 1ud9A 245 8.19e+01 d.131.1.2,d.131.1.2 107768,107769 1dpo 223 8.22e+01 5ptp b.47.1.2 25975 2f8aA 208 8.32e+01 2d8vA 67 8.56e+01 1nykA 165 8.61e+01 b.33.1.1 86408 1sur 215 8.69e+01 1sur c.26.2.2 31620 1euvB 86 8.71e+01 1a5r d.15.1.1 37598 2a1kA 233 8.72e+01 1wxiA 275 8.79e+01 1ew4A 106 8.84e+01 1ew4A d.82.2.1 40023 1o9iA 266 8.97e+01 a.25.1.3 92671 1ayoA 130 8.98e+01 1ayoA b.2.4.1 22431 1vhqA 232 8.99e+01 c.23.16.2 100696