# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vqoZ 83 1.26e-01 2ct7A 86 1.59e-01 2g2kA 170 3.78e-01 1kmtA 141 8.85e-01 b.1.18.8 77442 1vckA 115 1.21e+00 1odhA 174 1.40e+00 d.239.1.1 86850 1vk6A 269 1.58e+00 d.113.1.4,d.113.1.4 100851,100852 1jm1A 204 1.75e+00 b.33.1.1 71745 1rlyA 60 2.14e+00 g.41.3.1 104988 1l1oC 181 2.50e+00 b.40.4.3 73480 1ww8A 439 2.69e+00 1neeA 138 2.79e+00 d.241.1.1,g.59.1.1 91841,91842 1wrvA 308 3.07e+00 1d0qA 103 3.37e+00 1d0qA g.41.3.2 45208 1mswD 883 3.70e+00 e.8.1.3 79427 1vd4A 62 3.96e+00 2cklB 165 4.78e+00 1u8bA 133 5.01e+00 2bwfA 77 5.75e+00 1ee8A 266 5.82e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1qxfA 66 6.14e+00 g.41.8.4 96527 2fqpA 97 6.39e+00 1k8kA 418 6.48e+00 c.55.1.1,c.55.1.1 68305,68306 1wd2A 60 7.55e+00 g.44.1.1 109232 1ypvA 313 8.09e+00 1t0bA 252 8.57e+00 c.23.16.6 106199 1r5mA 425 8.81e+00 1x75A 132 9.25e+00 1yk4A 52 9.27e+00 3daaA 277 9.57e+00 1daaA e.17.1.1 43272 1ogdA 131 9.76e+00 c.133.1.1 92893 1cojA 212 9.85e+00 1avmA a.2.11.1,d.44.1.1 15737,38734 1rb9 53 1.04e+01 1rb9 g.41.5.1 45214 2sak 121 1.05e+01 2sak d.15.5.1 37711 1rfs 139 1.13e+01 1rfs b.33.1.1 24434 1iro 54 1.27e+01 1rb9 g.41.5.1 45223 1k7hA 476 1.29e+01 c.76.1.1 72101 1cv8 174 1.33e+01 1cv8 d.3.1.1 37089 1iyeA 309 1.36e+01 e.17.1.1 83786 1nykA 165 1.38e+01 b.33.1.1 86408 1yovA 537 1.42e+01 1wxiA 275 1.43e+01 1fp0A 88 1.44e+01 1fp0A g.50.1.2 45361 1k0mA 241 1.44e+01 a.45.1.1,c.47.1.5 67949,67950 1ur6B 52 1.46e+01 g.44.1.1 99812 2au3A 407 1.49e+01 7taa 478 1.49e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1hyeA 313 1.57e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1ji1A 637 1.61e+01 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1uh4A 637 1.61e+01 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1ptq 50 1.64e+01 1ptq g.49.1.1 45349 1rdg 53 1.70e+01 1rb9 g.41.5.1 45221 1dxgA 36 1.75e+01 1dxgA g.41.5.2 45247 1lj5A 379 1.87e+01 e.1.1.1 73928 1wfeA 86 2.02e+01 1upiA 225 2.03e+01 b.82.1.1 99757 1ty9A 222 2.06e+01 1zu0A 529 2.08e+01 2a1rA 430 2.20e+01 1vq0A 302 2.22e+01 1dgfA 497 2.23e+01 1cf9A e.5.1.1 42782 2cy5A 140 2.23e+01 2bx9A 53 2.28e+01 1mr1C 99 2.28e+01 d.217.1.2 79420 1pfvA 551 2.30e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1brfA 53 2.32e+01 1rb9 g.41.5.1 45236 1z4rA 168 2.42e+01 1xakA 83 2.51e+01 1yt5A 258 2.52e+01 2c43A 323 2.59e+01 1mea 28 2.60e+01 g.41.1.1 45176 1gvjA 146 2.61e+01 a.4.5.21 90525 1pk6C 129 2.62e+01 b.22.1.1 94803 1l8dA 112 2.72e+01 h.4.12.1 73687 1i6aA 219 2.78e+01 c.94.1.1 61827 1u79A 129 2.78e+01 d.26.1.1 107714 1v54F 98 2.87e+01 g.41.5.3 100327 1inp 400 2.89e+01 1inp e.7.1.1 42972 1dxsA 80 2.91e+01 1cokA a.60.1.2 17944 2bhvA 246 2.96e+01 2cklA 108 2.97e+01 1r8oB 71 2.98e+01 2d8vA 67 2.99e+01 1vhqA 232 3.01e+01 c.23.16.2 100696 1zzpA 130 3.07e+01 1woyA 500 3.09e+01 1wdtA 665 3.10e+01 1mwwA 128 3.13e+01 d.80.1.4 91483 1weoA 93 3.18e+01 1fjgS 93 3.19e+01 1qkfA d.28.1.1 38451 1rmd 116 3.21e+01 1rmd g.37.1.1,g.44.1.1 45025,45322 2cjsC 62 3.35e+01 6rxn 46 3.41e+01 1rb9 g.41.5.1 45222 1vqoC 246 3.43e+01 1w2lA 99 3.44e+01 1wijA 140 3.47e+01 1h3nA 878 3.52e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1ifqA 138 3.59e+01 1ifqA d.110.4.1 62350 1ew4A 106 3.61e+01 1ew4A d.82.2.1 40023 1dl0A 37 3.62e+01 1dl0A g.3.6.2 44112 1p32A 209 3.62e+01 1p32A d.25.1.1 38379 1twfI 122 3.63e+01 1g6aA 271 3.64e+01 1btl e.3.1.1 42704 1jgsA 138 3.67e+01 a.4.5.28 66683 1kq1A 77 3.70e+01 b.38.1.2 72848 1n2sA 299 3.71e+01 c.2.1.2 79857 2aheA 267 3.72e+01 1wvkA 86 3.73e+01 1q35A 320 3.76e+01 c.94.1.1 95661 2iu4A 336 3.77e+01 1zd9A 188 3.81e+01 1qqqA 264 3.82e+01 1bkpA d.117.1.1 40931 1m22A 503 3.82e+01 c.117.1.1 78464 1sr8A 298 3.87e+01 e.54.1.1 105959 2g8mA 264 3.87e+01 1k7cA 233 3.92e+01 c.23.10.4 68267 1b77A 228 3.94e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1m2tB 263 4.02e+01 b.42.2.1,b.42.2.1 84762,84763 1qz5A 375 4.10e+01 c.55.1.1,c.55.1.1 96614,96615 1pvmA 184 4.11e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 1zyoA 191 4.18e+01 1bnb 38 4.18e+01 1bnb g.9.1.1 44592 1y9wA 140 4.20e+01 2gu2A 312 4.21e+01 1r61A 207 4.29e+01 c.8.8.1 97138 2avuE 192 4.36e+01 1uayA 242 4.46e+01 c.2.1.2 88390 1ywzA 175 4.53e+01 1twfL 70 4.55e+01 1v54D 147 4.76e+01 f.23.1.1 100325 1u3eM 174 4.79e+01 d.4.1.3,d.285.1.1 107640,107641 2cy2A 174 4.86e+01 2an1A 292 5.00e+01 2fo3A 125 5.08e+01 1fjgT 106 5.08e+01 1fjfT a.7.6.1 16338 1wjvA 79 5.10e+01 1zin 217 5.14e+01 1zin c.37.1.1,g.41.2.1 31915,45178 2fiyA 309 5.18e+01 1o9iA 266 5.30e+01 a.25.1.3 92671 1u00A 227 5.36e+01 1sur 215 5.44e+01 1sur c.26.2.2 31620 1a78A 134 5.49e+01 1c1lA b.29.1.3 24212 1z60A 59 5.66e+01 2aq4A 434 5.68e+01 1u24A 337 5.68e+01 1r6lA 239 5.69e+01 d.14.1.4,d.101.1.1 97153,97154 2fpeA 62 5.69e+01 1q33A 292 5.76e+01 d.113.1.1 95657 2a20A 62 5.78e+01 1wjpA 107 5.86e+01 1m2kA 249 5.92e+01 c.31.1.5 84754 1hl9A 449 5.92e+01 b.71.1.3,c.1.8.11 90650,90651 1g8kB 133 5.95e+01 1g8jB b.33.1.1 24435 4eugA 229 6.04e+01 3eugA c.18.1.1 31019 1e7lA 157 6.07e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 2booA 247 6.13e+01 2dasA 62 6.19e+01 1qstA 160 6.20e+01 1yghA d.108.1.1 40804 1w9aA 147 6.23e+01 1wraA 308 6.31e+01 2cxkA 95 6.34e+01 1jr7A 311 6.34e+01 b.82.2.3 63255 2aq6A 147 6.35e+01 2g8oA 264 6.36e+01 1qtwA 285 6.38e+01 1qumA c.1.15.1 29392 1lv3A 68 6.40e+01 g.39.1.9 78231 1rttA 193 6.41e+01 c.23.5.4 105098 2fxuA 375 6.44e+01 1ti6B 274 6.47e+01 b.3.5.1,d.58.1.5 106976,106977 2ezvA 269 6.52e+01 1g5aA 628 6.69e+01 b.71.1.1,c.1.8.1 65152,65153 1w6sB 74 6.79e+01 1dzlA 505 6.80e+01 1dzlA b.121.6.1 23586 1zkkA 167 6.84e+01 1y4hA 188 6.97e+01 1g4iA 123 6.98e+01 1poa a.133.1.2 60241 1ri6A 343 6.99e+01 b.69.11.1 97503 1gkmA 509 7.01e+01 a.127.1.2 70228 1z6uA 150 7.02e+01 1tz9A 367 7.09e+01 c.1.15.6 107466 1zsqA 528 7.24e+01 1pxvA 183 7.27e+01 d.3.1.1 95301 1t2dA 322 7.36e+01 c.2.1.5,d.162.1.1 99084,99085 2glfA 450 7.41e+01 2b9dA 52 7.49e+01 2g8yA 385 7.49e+01 1zvnA 99 7.58e+01 2b5iD 217 7.60e+01 1zmtA 254 7.69e+01 2c1xA 456 7.69e+01 1cl4A 60 7.87e+01 1cl4A g.40.1.1 45171 1qwtA 255 7.99e+01 b.26.1.3 96501 1tqnA 486 8.03e+01 a.104.1.1 107238 1t3qB 788 8.06e+01 d.41.1.1,d.133.1.1 106369,106370 1io1A 398 8.09e+01 1io1A e.32.1.1 62611 5rubA 490 8.17e+01 1burA c.1.14.1,d.58.9.1 29382,39288 1afp 51 8.32e+01 1afp g.26.1.1 44947 1aky 221 8.33e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1vrmA 325 8.44e+01 1xu1R 42 8.45e+01 1jnrB 150 8.47e+01 d.58.1.5 66969 1n6zA 105 8.56e+01 d.263.1.1 85369 1zxtA 76 8.57e+01 1w41A 101 8.58e+01 1hw5A 210 8.59e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1vetA 124 8.60e+01 d.110.7.1 108553 1n62B 809 8.68e+01 d.41.1.1,d.133.1.1 80092,80093 1o12A 376 8.80e+01 b.92.1.5,c.1.9.10 80758,80759 1tpm 50 8.91e+01 1tpg g.27.1.1 44957