# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vqoZ 83 1.76e-01 1rlyA 60 1.99e-01 g.41.3.1 104988 2ct7A 86 2.12e-01 2ac3A 316 5.14e-01 2a1rA 430 7.65e-01 1wd2A 60 9.90e-01 g.44.1.1 109232 1y9wA 140 1.12e+00 1ypvA 313 1.20e+00 1vk6A 269 1.28e+00 d.113.1.4,d.113.1.4 100851,100852 2fqpA 97 2.05e+00 2gatA 66 2.18e+00 1gatA g.39.1.1 45102 2a8jA 420 2.52e+00 1w0uA 55 2.52e+00 2cklA 108 2.54e+00 1vd4A 62 2.56e+00 1ur6B 52 2.98e+00 g.44.1.1 99812 2a20A 62 3.02e+00 2bwfA 77 3.13e+00 1vq0A 302 3.34e+00 2cjsC 62 4.14e+00 1ku1A 230 5.15e+00 a.118.3.1 72996 1qqqA 264 5.35e+00 1bkpA d.117.1.1 40931 1y88A 199 5.66e+00 2g8mA 264 6.00e+00 1tr9A 341 6.24e+00 1kkeA 210 6.39e+00 b.21.1.2,b.83.1.2 68669,68670 1wjvA 79 6.72e+00 1lv3A 68 6.74e+00 g.39.1.9 78231 2d1uA 104 6.82e+00 2gpiA 91 7.61e+00 2g8oA 264 7.85e+00 1pkhA 204 7.98e+00 b.85.4.1 94832 2c30A 321 8.02e+00 1q68B 29 8.40e+00 j.108.1.1 95963 1r1a1 287 8.43e+00 1aym1 1m1qA 91 8.46e+00 a.138.1.3 74419 1fiqB 350 8.85e+00 1fiqB d.87.2.1,d.145.1.3 40229,41760 1vckA 115 1.05e+01 1ee8A 266 1.07e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1dl0A 37 1.18e+01 1dl0A g.3.6.2 44112 1l8dA 112 1.31e+01 h.4.12.1 73687 1dv1A 449 1.38e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1w8kA 447 1.48e+01 2avuE 192 1.59e+01 1odhA 174 1.63e+01 d.239.1.1 86850 1oapA 109 1.74e+01 d.79.7.1 92706 1wfeA 86 1.78e+01 1rfs 139 1.79e+01 1rfs b.33.1.1 24434 1lvfA 110 1.80e+01 a.47.2.1 74280 1z6uA 150 1.80e+01 1afp 51 1.84e+01 1afp g.26.1.1 44947 2bx9A 53 1.86e+01 1mr1C 99 1.89e+01 d.217.1.2 79420 1l1oC 181 1.94e+01 b.40.4.3 73480 1rdg 53 1.95e+01 1rb9 g.41.5.1 45221 1woyA 500 1.99e+01 1ufzA 83 1.99e+01 a.5.9.1 107821 1rb9 53 2.00e+01 1rb9 g.41.5.1 45214 1yb3A 175 2.03e+01 1lm5A 214 2.05e+01 d.211.2.1 74029 1ejxA 100 2.08e+01 d.8.1.1 83182 1z60A 59 2.10e+01 1zsqA 528 2.11e+01 1dxsA 80 2.14e+01 1cokA a.60.1.2 17944 1bnb 38 2.16e+01 1bnb g.9.1.1 44592 2csvA 72 2.17e+01 2g2kA 170 2.18e+01 1vziA 126 2.19e+01 b.1.13.1,g.41.5.2 108967,108968 3pmgA 561 2.27e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1z1zA 131 2.32e+01 1kveA 63 2.34e+01 1kveA d.70.1.2 39590 1llmC 88 2.34e+01 g.37.1.1,g.37.1.1 91059,91060 1weoA 93 2.36e+01 1twfL 70 2.37e+01 1kb9H 93 2.37e+01 f.23.13.1 77323 1brfA 53 2.54e+01 1rb9 g.41.5.1 45236 2fclA 169 2.62e+01 1yk4A 52 2.69e+01 1qpaA 345 2.71e+01 1arv a.93.1.1 18585 1w27A 714 2.73e+01 1tw6A 133 2.77e+01 1erd 40 2.87e+01 1erd a.10.1.1 16362 1iro 54 2.87e+01 1rb9 g.41.5.1 45223 1lpbA 95 2.87e+01 1lpbA g.3.10.1,g.3.10.1 44189,44190 1xakA 83 2.89e+01 1yg6A 193 2.92e+01 1ptq 50 3.13e+01 1ptq g.49.1.1 45349 1kmtA 141 3.13e+01 b.1.18.8 77442 1usyA 275 3.18e+01 1p94A 76 3.23e+01 a.43.1.3 94380 1w33A 181 3.24e+01 1owxA 121 3.25e+01 d.58.7.1 87494 1qxfA 66 3.26e+01 g.41.8.4 96527 1jsuC 84 3.29e+01 1jsuC j.55.1.1 46339 1v32A 101 3.33e+01 a.42.1.1 100277 1u69A 163 3.34e+01 d.32.1.7 107699 2dasA 62 3.51e+01 1ka8A 100 3.60e+01 a.4.5.20 72241 1q33A 292 3.62e+01 d.113.1.1 95657 1wy9A 147 3.63e+01 2boqA 331 3.64e+01 1ln1A 214 3.75e+01 d.129.3.2 74038 1xd3A 230 3.76e+01 1yvoA 172 3.84e+01 1cewI 108 3.87e+01 1cewI d.17.1.2 37999 1nekC 129 4.03e+01 f.21.2.2 80431 2fvhA 120 4.08e+01 1bs0A 384 4.17e+01 1bs0A c.67.1.4 34490 1cl4A 60 4.32e+01 1cl4A g.40.1.1 45171 1u79A 129 4.38e+01 d.26.1.1 107714 1xi7A 61 4.43e+01 2h58A 330 4.47e+01 1wjpA 107 4.48e+01 1oyjA 231 4.64e+01 a.45.1.1,c.47.1.5 87597,87598 1d0qA 103 4.67e+01 1d0qA g.41.3.2 45208 1y5oA 115 4.74e+01 1fiuA 286 4.74e+01 1fiuA c.52.1.10 33317 830cA 168 4.76e+01 1ck7A d.92.1.11 40400 6rxn 46 4.83e+01 1rb9 g.41.5.1 45222 1x9mA 698 4.85e+01 2sak 121 4.89e+01 2sak d.15.5.1 37711 1ifqA 138 4.94e+01 1ifqA d.110.4.1 62350 1rh6A 55 5.02e+01 a.6.1.7 104935 1p5zB 263 5.06e+01 c.37.1.1 87815 2a7oA 112 5.14e+01 2ftrA 108 5.22e+01 1m0gA 30 5.37e+01 g.46.1.1 84743 2glfA 450 5.42e+01 1vzyA 291 5.52e+01 1a78A 134 5.57e+01 1c1lA b.29.1.3 24212 1eziA 228 5.62e+01 1eyrA c.68.1.13 34512 1yviA 149 5.62e+01 1qbjA 81 5.63e+01 1qbjA a.4.5.19 16155 1dxgA 36 5.65e+01 1dxgA g.41.5.2 45247 1ydlA 79 5.67e+01 1jb0L 154 5.69e+01 1jb0L f.31.1.1 62829 1urqA 63 5.71e+01 h.1.15.1 107994 1yovA 537 5.87e+01 1jgsA 138 5.90e+01 a.4.5.28 66683 1k8kA 418 6.05e+01 c.55.1.1,c.55.1.1 68305,68306 1ldjB 90 6.14e+01 g.44.1.1 73850 1mea 28 6.21e+01 g.41.1.1 45176 2eifA 136 6.22e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1k1eA 180 6.27e+01 c.108.1.5 67995 1q5hA 147 6.34e+01 b.85.4.1 95893 1va4A 279 6.43e+01 c.69.1.12 108458 1g4mA 393 6.49e+01 b.1.18.11,b.1.18.11 65143,65144 1ovxA 67 6.60e+01 g.39.1.11 93622 2axiA 115 6.62e+01 1ycdA 243 6.64e+01 1zvnA 99 6.68e+01 1oflA 481 6.69e+01 b.80.1.4 103934 1fp2A 352 6.83e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 2c1xA 456 6.97e+01 1hdlA 55 7.12e+01 g.68.1.2 65808 1mtyB 384 7.16e+01 1mtyB a.25.1.2 16740 1j58A 385 7.17e+01 b.82.1.2 71531 1r5eA 115 7.18e+01 1josA 128 7.27e+01 d.52.7.1 84191 2avyM 117 7.51e+01 1ayoA 130 7.58e+01 1ayoA b.2.4.1 22431 1e0eA 55 7.64e+01 1wjcA a.4.10.1 59147 1poc 134 7.70e+01 1poc a.133.1.1 19513 1j5jA 36 7.76e+01 g.3.7.2 77082 2ctdA 96 7.81e+01 1yopA 83 7.99e+01 1x31D 99 8.32e+01 1i8fA 81 8.33e+01 1i8fA b.38.1.1 61959 1g73C 121 8.40e+01 1g3fA g.52.1.1 45375 1sxrA 183 8.74e+01 d.118.1.1 106101 1gl2D 65 8.78e+01 h.1.15.1 65281 1hl2A 297 8.83e+01 c.1.10.1 83581