# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1s72Z 73 2.01e-01 g.41.8.1 105345 1vqoZ 83 2.07e-01 2ct7A 86 3.86e-01 1dl6A 58 1.11e+00 1dl6A g.41.3.1 45207 1vk6A 269 1.22e+00 d.113.1.4,d.113.1.4 100851,100852 1kmtA 141 1.41e+00 b.1.18.8 77442 1vckA 115 1.42e+00 1fsoA 139 1.55e+00 1rhoA b.1.18.8 60007 1rlyA 60 1.58e+00 g.41.3.1 104988 1wd2A 60 1.86e+00 g.44.1.1 109232 1odhA 174 2.15e+00 d.239.1.1 86850 1deoA 233 2.28e+00 1deoA c.23.10.4 31345 1k7cA 233 2.34e+00 c.23.10.4 68267 1mswD 883 2.61e+00 e.8.1.3 79427 2g2kA 170 2.80e+00 1jj2Y 73 2.97e+00 1ffkW g.41.8.1 63110 1y9wA 140 3.00e+00 1n9dA 199 3.12e+00 a.26.1.1 85464 1jm1A 204 3.45e+00 b.33.1.1 71745 1s9rA 410 3.52e+00 d.126.1.4 98758 2fqpA 97 3.68e+00 1wpkA 146 3.72e+00 1zgwA 139 4.10e+00 1wrvA 308 4.54e+00 1x75A 132 4.90e+00 1l1oC 181 5.21e+00 b.40.4.3 73480 1xxoA 147 5.93e+00 1w9aA 147 5.94e+00 2awpA 198 7.09e+00 1nykA 165 7.19e+00 b.33.1.1 86408 1ww8A 439 7.84e+00 1vd4A 62 8.17e+00 1qxfA 66 8.36e+00 g.41.8.4 96527 1adn 92 8.75e+00 1adn g.48.1.1 45348 2bwfA 77 1.04e+01 1ab4 477 1.06e+01 1ab4 e.11.1.1 43251 1bc8C 93 1.09e+01 1awcA a.4.5.21 16168 1ur6B 52 1.12e+01 g.44.1.1 99812 1k3eA 156 1.12e+01 d.198.1.1 68103 1ee8A 266 1.12e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 2b5iD 217 1.13e+01 1z92B 219 1.30e+01 1d0qA 103 1.30e+01 1d0qA g.41.3.2 45208 1yk4A 52 1.32e+01 1qlnA 883 1.38e+01 1cezA e.8.1.3 43111 1vhqA 232 1.48e+01 c.23.16.2 100696 1neeA 138 1.49e+01 d.241.1.1,g.59.1.1 91841,91842 1k8kA 418 1.56e+01 c.55.1.1,c.55.1.1 68305,68306 1mr1C 99 1.58e+01 d.217.1.2 79420 1inp 400 1.73e+01 1inp e.7.1.1 42972 1oahA 519 1.78e+01 a.138.1.3 86736 1u8bA 133 1.79e+01 1ogdA 131 1.86e+01 c.133.1.1 92893 1z6uA 150 1.99e+01 1hvyA 288 2.00e+01 1bkpA d.117.1.1 41049 1r5mA 425 2.03e+01 1weoA 93 2.04e+01 1dl0A 37 2.07e+01 1dl0A g.3.6.2 44112 2dasA 62 2.09e+01 2aaiB 262 2.14e+01 1abrB b.42.2.1,b.42.2.1 25561,25562 1iro 54 2.26e+01 1rb9 g.41.5.1 45223 1i50L 70 2.27e+01 g.41.9.2 61766 1w8kA 447 2.35e+01 1u24A 337 2.40e+01 1uh4A 637 2.41e+01 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1ptq 50 2.41e+01 1ptq g.49.1.1 45349 1ji1A 637 2.44e+01 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 2btfA 375 2.45e+01 1yagA c.55.1.1,c.55.1.1 33429,33430 1hyuA 521 2.47e+01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1utyA 187 2.48e+01 b.147.1.1 108036 2avuE 192 2.50e+01 1zzpA 130 2.50e+01 1rfs 139 2.51e+01 1rfs b.33.1.1 24434 1k0mA 241 2.57e+01 a.45.1.1,c.47.1.5 67949,67950 1ifqA 138 2.59e+01 1ifqA d.110.4.1 62350 1wxiA 275 2.65e+01 1qa7A 217 2.67e+01 1havA b.47.1.4 26425 1exkA 79 2.68e+01 1exkA g.54.1.1 45384 1v87A 114 2.68e+01 g.44.1.1 108422 1kyqA 274 2.69e+01 c.2.1.11,e.37.1.1 73281,73282 1vor2 58 2.76e+01 2bx9A 53 2.79e+01 1e7lA 157 2.83e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 2sak 121 2.89e+01 2sak d.15.5.1 37711 1k7hA 476 2.89e+01 c.76.1.1 72101 1zin 217 2.91e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1sp1 29 2.91e+01 g.37.1.1 45051 2cx1A 187 2.96e+01 1fp0A 88 2.98e+01 1fp0A g.50.1.2 45361 2fpeA 62 3.10e+01 2c43A 323 3.16e+01 7taa 478 3.17e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1q33A 292 3.20e+01 d.113.1.1 95657 1xakA 83 3.25e+01 2g8yA 385 3.28e+01 1ypvA 313 3.33e+01 1u2xA 474 3.37e+01 c.72.1.3 107622 1zip 217 3.39e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1dxgA 36 3.43e+01 1dxgA g.41.5.2 45247 2bydA 323 3.45e+01 1rb9 53 3.47e+01 1rb9 g.41.5.1 45214 1wjvA 79 3.47e+01 1wfeA 86 3.54e+01 1yl35 60 3.66e+01 1havA 217 3.75e+01 1havA b.47.1.4 26423 1p6pA 125 3.85e+01 b.60.1.2 87839 1lm5A 214 3.87e+01 d.211.2.1 74029 1qvbA 481 4.12e+01 1qvbA c.1.8.4 28983 1c3hA 137 4.12e+01 b.22.1.1 90405 1e53A 59 4.15e+01 1e53A g.49.1.2 45356 1gp1A 198 4.19e+01 1gp1A c.47.1.10 33059 1cv8 174 4.24e+01 1cv8 d.3.1.1 37089 1l8dA 112 4.29e+01 h.4.12.1 73687 1tz9A 367 4.33e+01 c.1.15.6 107466 2cklB 165 4.45e+01 2aheA 267 4.45e+01 1mea 28 4.45e+01 g.41.1.1 45176 1twfL 70 4.46e+01 1cojA 212 4.48e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1wvkA 86 4.52e+01 1q68B 29 4.54e+01 j.108.1.1 95963 1qamA 244 4.56e+01 2ercA c.66.1.24 34220 1a78A 134 4.58e+01 1c1lA b.29.1.3 24212 1f4lA 551 4.60e+01 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 59648,59649,59650 1twfI 122 4.60e+01 1guiA 155 4.64e+01 b.18.1.14 76351 1iyeA 309 4.66e+01 e.17.1.1 83786 1gvjA 146 4.67e+01 a.4.5.21 90525 1pfvA 551 4.68e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1v54D 147 4.68e+01 f.23.1.1 100325 2occD 147 4.73e+01 1ocrD f.23.1.1 43521 1zxzA 197 4.86e+01 1r6lA 239 4.88e+01 d.14.1.4,d.101.1.1 97153,97154 2aq6A 147 4.88e+01 1wjpA 107 4.93e+01 2bcoA 350 4.96e+01 2cjsC 62 5.03e+01 1p3jA 217 5.10e+01 c.37.1.1,g.41.2.1 94022,94023 1qlaB 239 5.14e+01 1qlaB a.1.2.1,d.15.4.2 15679,37707 1c28A 135 5.16e+01 1c28A b.22.1.1 23857 1wijA 140 5.23e+01 1m22A 503 5.26e+01 c.117.1.1 78464 1uby 367 5.42e+01 1uby a.128.1.1 19435 1dgaA 375 5.49e+01 1yagA 1gqvA 135 5.50e+01 d.5.1.1 70376 1rdg 53 5.53e+01 1rb9 g.41.5.1 45221 1qz5A 375 5.64e+01 c.55.1.1,c.55.1.1 96614,96615 1d4xA 375 5.68e+01 1yagA c.55.1.1,c.55.1.1 59107,59108 2a20A 62 5.73e+01 1sz6B 263 5.83e+01 1t0bA 252 5.87e+01 c.23.16.6 106199 1i1kA 309 5.88e+01 1daaA e.17.1.1 61533 2cy5A 140 6.01e+01 1tqnA 486 6.01e+01 a.104.1.1 107238 1y3nA 490 6.01e+01 1zkkA 167 6.04e+01 2eu8A 216 6.06e+01 1xi7A 61 6.10e+01 1plq 258 6.19e+01 1plq d.131.1.2,d.131.1.2 41388,41389 1jgsA 138 6.26e+01 a.4.5.28 66683 1zy1B 197 6.29e+01 2aaa 484 6.38e+01 7taa b.71.1.1,c.1.8.1 27777,28764 1hdlA 55 6.39e+01 g.68.1.2 65808 1i50I 122 6.43e+01 g.41.3.1,g.41.3.1 61762,61763 1upiA 225 6.48e+01 b.82.1.1 99757 1bq9A 54 6.54e+01 1rb9 g.41.5.1 45238 1m2tB 263 6.67e+01 b.42.2.1,b.42.2.1 84762,84763 1kkeA 210 6.75e+01 b.21.1.2,b.83.1.2 68669,68670 1ywzA 175 6.79e+01 1v6pA 62 6.95e+01 1usyA 275 6.95e+01 1vfyA 73 7.00e+01 1vfyA g.50.1.1 45357 2cklA 108 7.03e+01 2d8vA 67 7.04e+01 2eng 210 7.14e+01 2eng b.52.1.1 26895 1jr7A 311 7.14e+01 b.82.2.3 63255 1dgfA 497 7.20e+01 1cf9A e.5.1.1 42782 1theA 260 7.29e+01 1theB d.3.1.1 37056 1zyoA 191 7.30e+01 1a4yB 123 7.44e+01 7rsa d.5.1.1 37296 1o12A 376 7.50e+01 b.92.1.5,c.1.9.10 80758,80759 1j6zA 376 7.51e+01 1yagA c.55.1.1,c.55.1.1 62667,62668 1lv3A 68 7.53e+01 g.39.1.9 78231 1dvpA 220 7.56e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 1hw5A 210 7.57e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 2f8aA 208 7.83e+01 3daaA 277 7.92e+01 1daaA e.17.1.1 43272 1brfA 53 8.00e+01 1rb9 g.41.5.1 45236 2an1A 292 8.07e+01 1pk6C 129 8.22e+01 b.22.1.1 94803 1sur 215 8.25e+01 1sur c.26.2.2 31620 1qtwA 285 8.25e+01 1qumA c.1.15.1 29392 2gu2A 312 8.37e+01 1fjgS 93 8.46e+01 1qkfA d.28.1.1 38451 1sp3A 443 8.69e+01 a.138.1.3 105866 2fe5A 94 8.71e+01 1hyeA 313 8.74e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1wuaA 375 8.82e+01 2aq4A 434 8.84e+01 1ldg 316 8.90e+01 1ceqA c.2.1.5,d.162.1.1 30165,42132 1t2dA 322 8.91e+01 c.2.1.5,d.162.1.1 99084,99085 1vetA 124 8.93e+01 d.110.7.1 108553