# List of top-scoring protein chains for t04-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yo8A 634 2.89e-01 2awpA 198 6.00e-01 1lurA 339 1.11e+00 b.30.5.4 84717 1xbfA 140 1.13e+00 d.273.1.1 109538 1s31A 273 1.31e+00 1y9wA 140 1.80e+00 1yq7A 374 2.83e+00 1h8lA 380 2.99e+00 b.3.2.1,c.56.5.1 65737,65738 1a88A 275 3.61e+00 1brt c.69.1.12 34707 1wc2A 181 3.66e+00 1theA 260 3.92e+00 1theB d.3.1.1 37056 1rc6A 261 4.23e+00 b.82.1.11 97287 1vckA 115 4.27e+00 1pixA 587 4.47e+00 c.14.1.4 94708 1eu1A 780 4.77e+00 1dmr b.52.2.2,c.81.1.1 26903,35311 1k0mA 241 5.32e+00 a.45.1.1,c.47.1.5 67949,67950 1uteA 313 5.33e+00 1uteA d.159.1.1 42078 1zs7A 190 6.15e+00 1s72Z 73 6.23e+00 g.41.8.1 105345 1hbzA 498 6.35e+00 1cf9A e.5.1.1 60937 1ooyA 481 6.39e+00 c.124.1.3,c.124.1.2 93388,93389 9gafA 295 6.39e+00 1apyA d.153.1.5 42008 2d0iA 333 6.74e+00 1v8eA 224 6.91e+00 1n62B 809 7.09e+00 d.41.1.1,d.133.1.1 80092,80093 1xqwA 293 7.15e+00 1j1lA 290 7.26e+00 b.82.1.12 90766 1id1A 153 7.39e+00 1id1A c.2.1.9 62286 2fimA 276 8.24e+00 1c30B 382 8.39e+00 c.8.3.1,c.23.16.1 30736,31413 2cy2A 174 8.76e+00 1vqoZ 83 8.90e+00 1ynfA 458 8.92e+00 1v4pA 157 9.21e+00 2bdvA 231 9.24e+00 2btfA 375 9.64e+00 1yagA c.55.1.1,c.55.1.1 33429,33430 1o7eA 276 1.17e+01 e.3.1.1 92622 1htqA 477 1.22e+01 d.15.9.1,d.128.1.1 71035,71036 1xwfA 431 1.23e+01 2bb6A 414 1.30e+01 1qksA 567 1.31e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1mtzA 293 1.39e+01 c.69.1.7 79467 1ykdA 398 1.48e+01 2aq5A 402 1.51e+01 1wiwA 290 1.51e+01 1qg3A 195 1.52e+01 1qg3A b.1.2.1,b.1.2.1 21993,21994 2aorA 223 1.53e+01 1wfxA 186 1.55e+01 1bg0 356 1.57e+01 1qh4A a.83.1.1,d.128.1.2 18476,41211 1vk6A 269 1.57e+01 d.113.1.4,d.113.1.4 100851,100852 1woyA 500 1.59e+01 1tz9A 367 1.62e+01 c.1.15.6 107466 1h7nA 342 1.67e+01 1b4kA c.1.10.3 60726 1w9aA 147 1.68e+01 1efdN 266 1.70e+01 1efdN c.92.2.1 35597 1ww8A 439 1.72e+01 1k6dA 220 1.75e+01 c.124.1.2 72082 1dgwA 178 1.75e+01 1dgwA b.82.1.2 28090 2ct7A 86 1.82e+01 2aheA 267 1.91e+01 2afwA 329 1.91e+01 1xxoA 147 1.91e+01 1qhtA 775 1.96e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 2bllA 345 1.96e+01 1mswD 883 1.97e+01 e.8.1.3 79427 1s6bA 119 2.01e+01 a.133.1.2 98592 1ii2A 524 2.01e+01 c.91.1.1,c.109.1.1 66146,66147 1olzA 663 2.03e+01 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1p4kA 295 2.06e+01 d.153.1.5 87772 1qnnA 191 2.17e+01 1avmA a.2.11.1,d.44.1.1 15792,38755 2bwrA 401 2.22e+01 1n0uA 842 2.23e+01 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 79757,79758,79759,79760,79761 1jfrA 262 2.25e+01 1jfrA c.69.1.16 34724 1jj2Y 73 2.26e+01 1ffkW g.41.8.1 63110 1rgyA 360 2.26e+01 e.3.1.1 97456 1q35A 320 2.28e+01 c.94.1.1 95661 1e1hB 174 2.33e+01 1q33A 292 2.33e+01 d.113.1.1 95657 1qopB 396 2.36e+01 2tysB c.79.1.1 35270 1w2wB 191 2.48e+01 1kekA 1231 2.50e+01 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 68524,68525,68526,68527,68528 2cn3A 737 2.52e+01 1cyx 205 2.56e+01 1cyx b.6.1.2 23023 1g4iA 123 2.57e+01 1poa a.133.1.2 60241 1wd2A 60 2.59e+01 g.44.1.1 109232 2auaA 224 2.59e+01 1kssA 571 2.61e+01 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1ui8A 638 2.70e+01 b.30.2.1,d.17.2.1,d.17.2.1 99419,99420,99421 1odhA 174 2.71e+01 d.239.1.1 86850 1dl0A 37 2.74e+01 1dl0A g.3.6.2 44112 2f8lA 344 2.80e+01 1wrvA 308 2.82e+01 3vub 101 2.86e+01 3vub b.34.6.1 24613 1vkdA 338 2.87e+01 b.67.2.4 108644 2aaoA 166 2.88e+01 1vprA 374 2.93e+01 1xw2A 405 2.97e+01 1gweA 503 3.01e+01 e.5.1.1 70667 1qh4A 380 3.02e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 3eipA 84 3.04e+01 3eipA d.26.2.1 38434 1mc0A 368 3.06e+01 d.110.2.1,d.110.2.1 78937,78938 2anxA 146 3.22e+01 1h12A 405 3.22e+01 a.102.1.2 83447 2fflA 756 3.25e+01 1xwtA 405 3.33e+01 1ezm 301 3.38e+01 1hyt d.92.1.2 58980 2basA 431 3.44e+01 1jm1A 204 3.45e+01 b.33.1.1 71745 1jb0F 164 3.47e+01 1jb0F f.23.16.1 62825 1smlA 269 3.50e+01 1smlA d.157.1.1 42053 1txuA 273 3.52e+01 a.222.1.1 107439 1dl6A 58 3.63e+01 1dl6A g.41.3.1 45207 2aq6A 147 3.64e+01 1dxsA 80 3.66e+01 1cokA a.60.1.2 17944 1kmoA 774 3.67e+01 f.4.3.3 72753 1ifqA 138 3.69e+01 1ifqA d.110.4.1 62350 1pjr 724 3.73e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1ri6A 343 3.73e+01 b.69.11.1 97503 2fqpA 97 3.74e+01 1r13A 148 3.83e+01 d.169.1.1,h.1.1.1 96782,96783 1w3jA 468 3.84e+01 c.1.8.4 109156 1ia6A 441 3.85e+01 a.102.1.2 76738 1xd3A 230 3.86e+01 1u04A 771 3.89e+01 b.34.14.1,c.55.3.10 107539,107540 1gvjA 146 3.92e+01 a.4.5.21 90525 1y7bA 542 3.95e+01 1txvB 440 4.01e+01 1ogdA 131 4.02e+01 c.133.1.1 92893 1hvyA 288 4.04e+01 1bkpA d.117.1.1 41049 1vk4A 298 4.08e+01 c.72.1.1 100850 1kw3B 292 4.12e+01 d.32.1.3,d.32.1.3 77549,77550 1nr0A 611 4.14e+01 b.69.4.1,b.69.4.1 86078,86079 1z2kA 109 4.16e+01 1cojA 212 4.35e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 2gu3A 136 4.43e+01 1kblA 873 4.43e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1j1bA 420 4.45e+01 d.144.1.7 90758 1t3qB 788 4.54e+01 d.41.1.1,d.133.1.1 106369,106370 2exrA 524 4.72e+01 1ecfA 504 4.80e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1z6uA 150 4.84e+01 1e9lA 377 4.93e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 1ur6B 52 4.94e+01 g.44.1.1 99812 2aqwA 332 4.97e+01 1uy4A 145 4.98e+01 b.18.1.10 108131 1zm8A 259 4.99e+01 2bce 581 5.01e+01 2bce c.69.1.1 34625 1vavA 222 5.02e+01 b.29.1.18 108472 1dgfA 497 5.06e+01 1cf9A e.5.1.1 42782 1yspA 181 5.14e+01 1sz6B 263 5.17e+01 1g8kB 133 5.24e+01 1g8jB b.33.1.1 24435 1hrdA 449 5.25e+01 1k89 c.2.1.7,c.58.1.1 30219,33867 1w9pA 433 5.30e+01 1se8A 301 5.35e+01 b.40.4.3 105448 1oyjA 231 5.35e+01 a.45.1.1,c.47.1.5 87597,87598 1y8cA 246 5.45e+01 1xl7A 612 5.52e+01 1v7oA 165 5.54e+01 d.67.1.2 100480 1e39A 571 5.55e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1omp 370 5.59e+01 4mbp c.94.1.1 35778 1ubeA 349 5.60e+01 c.37.1.11,d.48.1.1 88412,88413 1qznA 173 5.62e+01 b.2.2.2 104669 1pj5A 830 5.63e+01 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1yd0A 96 5.76e+01 1ex1A 605 5.88e+01 1ex1A c.1.8.7,c.23.11.1 29013,31347 1k8kA 418 5.89e+01 c.55.1.1,c.55.1.1 68305,68306 1adn 92 5.93e+01 1adn g.48.1.1 45348 1lvoA 302 5.94e+01 b.47.1.4 74284 1x9pA 523 5.98e+01 1nk4A 580 6.00e+01 c.55.3.5,e.8.1.1 91923,91924 1w8oA 601 6.09e+01 1r6lA 239 6.23e+01 d.14.1.4,d.101.1.1 97153,97154 1inp 400 6.24e+01 1inp e.7.1.1 42972 1ptq 50 6.34e+01 1ptq g.49.1.1 45349 1r6vA 671 6.39e+01 1lokA 291 6.40e+01 c.56.5.4 78122 2d0oA 610 6.42e+01 1gppA 237 6.52e+01 b.86.1.2 76262 1uesA 191 6.57e+01 a.2.11.1,d.44.1.1 107798,107799 1qtwA 285 6.58e+01 1qumA c.1.15.1 29392 1xnzA 264 6.63e+01 1rlyA 60 6.66e+01 g.41.3.1 104988 1to6A 371 6.69e+01 c.141.1.1 107170 1tjlA 151 6.72e+01 a.2.14.1,g.39.1.13 107027,107028 1vb5A 276 6.76e+01 1oihA 301 6.77e+01 b.82.2.5 93051 1yk4A 52 6.82e+01 2absA 383 6.85e+01 1vd5A 377 6.85e+01 a.102.1.7 108518 1gefA 123 6.93e+01 1gefA c.52.1.18 60465 1ugmA 125 6.96e+01 d.15.1.3 107827 1a0fA 201 7.04e+01 1a0fA a.45.1.1,c.47.1.5 17737,33031 1qo7A 394 7.05e+01 1qo7A c.69.1.11 34697 1aszB 490 7.12e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 2h1tA 188 7.13e+01 1q7fA 286 7.26e+01 b.68.9.1 96036 1k4iA 233 7.36e+01 d.115.1.2 72056 1iqyA 638 7.37e+01 b.30.2.1,d.17.2.1,d.17.2.1 76763,76764,76765 1szqA 483 7.44e+01 e.44.1.1 99045 2f4eA 180 7.46e+01 2g39A 497 7.56e+01 1yymG 313 7.59e+01 1q0sA 259 7.61e+01 c.66.1.28 95509 1siiA 646 7.61e+01 b.30.2.1,d.17.2.1,d.17.2.1 105578,105579,105580 1dm0A 287 7.63e+01 1dm0A d.165.1.2 42227 1c3jA 351 7.75e+01 1c3jA c.87.1.1 35459 1t0bA 252 7.77e+01 c.23.16.6 106199 2gw2A 198 7.93e+01 1wr8A 231 8.00e+01 1czsA 160 8.03e+01 1cztA b.18.1.2 23714 1zbpA 273 8.03e+01 1h09A 338 8.06e+01 b.109.1.1,c.1.8.8 83420,83421 1rwiA 270 8.09e+01 b.68.9.1 97987 1iv3A 152 8.27e+01 d.79.5.1 76828 1wp5A 323 8.30e+01 1hr6A 475 8.32e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1w27A 714 8.36e+01 1qd5A 275 8.41e+01 1qd5A f.4.2.1 43748 1ti6A 875 8.44e+01 b.52.2.2,c.81.1.1 106974,106975 1gwuA 309 8.59e+01 a.93.1.1 83351 2c07A 285 8.70e+01 1db1A 259 8.81e+01 1db1A a.123.1.1 19329 1m2tB 263 8.83e+01 b.42.2.1,b.42.2.1 84762,84763 1hy7A 173 8.90e+01 d.92.1.11 65957