# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vqoZ 83 1.45e-01 2ct7A 86 1.65e-01 1s72Z 73 2.29e-01 g.41.8.1 105345 2g2kA 170 4.02e-01 1kmtA 141 9.39e-01 b.1.18.8 77442 1fsoA 139 1.15e+00 1rhoA b.1.18.8 60007 1vckA 115 1.38e+00 1dl6A 58 1.62e+00 1dl6A g.41.3.1 45207 1odhA 174 1.70e+00 d.239.1.1 86850 1vk6A 269 1.73e+00 d.113.1.4,d.113.1.4 100851,100852 1zgwA 139 1.87e+00 1jj2Y 73 2.09e+00 1ffkW g.41.8.1 63110 1jm1A 204 2.22e+00 b.33.1.1 71745 1qvbA 481 2.24e+00 1qvbA c.1.8.4 28983 1rlyA 60 2.32e+00 g.41.3.1 104988 1l1oC 181 2.71e+00 b.40.4.3 73480 1ww8A 439 2.94e+00 1neeA 138 3.03e+00 d.241.1.1,g.59.1.1 91841,91842 1d0qA 103 3.64e+00 1d0qA g.41.3.2 45208 1wrvA 308 3.72e+00 1mswD 883 4.05e+00 e.8.1.3 79427 1vd4A 62 4.46e+00 2cklB 165 5.36e+00 1u8bA 133 6.32e+00 2bwfA 77 6.63e+00 1ee8A 266 7.09e+00 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1hvyA 288 7.18e+00 1bkpA d.117.1.1 41049 1qxfA 66 7.52e+00 g.41.8.4 96527 2fqpA 97 7.63e+00 1k8kA 418 7.94e+00 c.55.1.1,c.55.1.1 68305,68306 1wd2A 60 8.21e+00 g.44.1.1 109232 1k3eA 156 8.66e+00 d.198.1.1 68103 1n9dA 199 8.79e+00 a.26.1.1 85464 1adn 92 8.93e+00 1adn g.48.1.1 45348 1wpkA 146 9.42e+00 1ypvA 313 9.80e+00 1bc8C 93 9.84e+00 1awcA a.4.5.21 16168 1r5mA 425 1.03e+01 1x75A 132 1.07e+01 1yk4A 52 1.11e+01 2sak 121 1.15e+01 2sak d.15.5.1 37711 1cojA 212 1.15e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1t0bA 252 1.19e+01 c.23.16.6 106199 1ogdA 131 1.19e+01 c.133.1.1 92893 1rfs 139 1.20e+01 1rfs b.33.1.1 24434 1rb9 53 1.24e+01 1rb9 g.41.5.1 45214 3daaA 277 1.26e+01 1daaA e.17.1.1 43272 1plq 258 1.49e+01 1plq d.131.1.2,d.131.1.2 41388,41389 1k7hA 476 1.54e+01 c.76.1.1 72101 1iro 54 1.54e+01 1rb9 g.41.5.1 45223 1cv8 174 1.56e+01 1cv8 d.3.1.1 37089 1zy1B 197 1.60e+01 1iyeA 309 1.64e+01 e.17.1.1 83786 2au3A 407 1.65e+01 1yovA 537 1.68e+01 1k0mA 241 1.69e+01 a.45.1.1,c.47.1.5 67949,67950 1ur6B 52 1.70e+01 g.44.1.1 99812 1wxiA 275 1.70e+01 1fp0A 88 1.75e+01 1fp0A g.50.1.2 45361 1nykA 165 1.79e+01 b.33.1.1 86408 7taa 478 1.85e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1hyeA 313 1.86e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1vor2 58 1.89e+01 1ji1A 637 1.90e+01 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1uh4A 637 1.91e+01 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 2bydA 323 1.95e+01 1ptq 50 1.96e+01 1ptq g.49.1.1 45349 1v87A 114 1.98e+01 g.44.1.1 108422 1rdg 53 2.03e+01 1rb9 g.41.5.1 45221 1yl35 60 2.07e+01 1upiA 225 2.26e+01 b.82.1.1 99757 1dxgA 36 2.33e+01 1dxgA g.41.5.2 45247 1oahA 519 2.34e+01 a.138.1.3 86736 1ty9A 222 2.38e+01 1wfeA 86 2.40e+01 1mr1C 99 2.44e+01 d.217.1.2 79420 1lj5A 379 2.47e+01 e.1.1.1 73928 1vq0A 302 2.49e+01 2a1rA 430 2.52e+01 1dgfA 497 2.55e+01 1cf9A e.5.1.1 42782 1exkA 79 2.70e+01 1exkA g.54.1.1 45384 1pfvA 551 2.71e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 2bx9A 53 2.77e+01 1brfA 53 2.82e+01 1rb9 g.41.5.1 45236 1bq9A 54 2.83e+01 1rb9 g.41.5.1 45238 1zu0A 529 2.87e+01 1i1kA 309 2.88e+01 1daaA e.17.1.1 61533 1zxzA 197 2.93e+01 1f4lA 551 2.94e+01 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 59648,59649,59650 2aaa 484 2.98e+01 7taa b.71.1.1,c.1.8.1 27777,28764 1pk6C 129 2.99e+01 b.22.1.1 94803 1nx8A 273 3.01e+01 b.82.2.8 86374 1xakA 83 3.01e+01 1mea 28 3.03e+01 g.41.1.1 45176 2c43A 323 3.07e+01 2cy5A 140 3.16e+01 1u79A 129 3.20e+01 d.26.1.1 107714 2bhvA 246 3.23e+01 1vhqA 232 3.29e+01 c.23.16.2 100696 1l8dA 112 3.31e+01 h.4.12.1 73687 1i6aA 219 3.35e+01 c.94.1.1 61827 1gvjA 146 3.39e+01 a.4.5.21 90525 1inp 400 3.44e+01 1inp e.7.1.1 42972 1a7cA 379 3.45e+01 1sek e.1.1.1 42660 2cklA 108 3.55e+01 1z4rA 168 3.56e+01 1dxsA 80 3.57e+01 1cokA a.60.1.2 17944 2d8vA 67 3.66e+01 1zzpA 130 3.70e+01 1c3hA 137 3.70e+01 b.22.1.1 90405 1r8oB 71 3.76e+01 1yt5A 258 3.76e+01 1v54F 98 3.80e+01 g.41.5.3 100327 1dgaA 375 3.82e+01 1yagA 1rmd 116 3.88e+01 1rmd g.37.1.1,g.44.1.1 45025,45322 2cjsC 62 3.88e+01 2occF 98 3.89e+01 2occF g.41.5.3 45256 1weoA 93 3.89e+01 1uby 367 3.89e+01 1uby a.128.1.1 19435 1mwwA 128 3.90e+01 d.80.1.4 91483 1wvkA 86 4.08e+01 1kq1A 77 4.10e+01 b.38.1.2 72848 1wdtA 665 4.11e+01 1woyA 500 4.12e+01 1ifqA 138 4.14e+01 1ifqA d.110.4.1 62350 1jj2C 246 4.14e+01 1ffkC c.22.1.1 63087 2aheA 267 4.16e+01 1c28A 135 4.19e+01 1c28A b.22.1.1 23857 6rxn 46 4.19e+01 1rb9 g.41.5.1 45222 1fjgS 93 4.19e+01 1qkfA d.28.1.1 38451 1u2xA 474 4.26e+01 c.72.1.3 107622 1g6aA 271 4.29e+01 1btl e.3.1.1 42704 1wijA 140 4.31e+01 1h3nA 878 4.32e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1d4xA 375 4.34e+01 1yagA c.55.1.1,c.55.1.1 59107,59108 1vqoC 246 4.35e+01 1wuaA 375 4.35e+01 1w2lA 99 4.37e+01 1s72C 246 4.38e+01 c.22.1.1 105321 2gu2A 312 4.41e+01 1n2sA 299 4.46e+01 c.2.1.2 79857 1k7cA 233 4.52e+01 c.23.10.4 68267 1ab4 477 4.55e+01 1ab4 e.11.1.1 43251 1p32A 209 4.55e+01 1p32A d.25.1.1 38379 1twfI 122 4.57e+01 1jgsA 138 4.58e+01 a.4.5.28 66683 1q35A 320 4.59e+01 c.94.1.1 95661 1sp1 29 4.62e+01 g.37.1.1 45051 1jb0F 164 4.66e+01 1jb0F f.23.16.1 62825 1zd9A 188 4.70e+01 1dl0A 37 4.70e+01 1dl0A g.3.6.2 44112 1ew4A 106 4.70e+01 1ew4A d.82.2.1 40023 1b77A 228 4.71e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1sr8A 298 4.71e+01 e.54.1.1 105959 1deoA 233 4.73e+01 1deoA c.23.10.4 31345 1m22A 503 4.74e+01 c.117.1.1 78464 1qz5A 375 4.91e+01 c.55.1.1,c.55.1.1 96614,96615 1pvmA 184 4.92e+01 d.37.1.1,d.37.1.1,g.41.13.1 95171,95172,95173 2iu4A 336 4.98e+01 1zyoA 191 5.01e+01 1twfL 70 5.19e+01 1a8h 500 5.22e+01 1a8h a.27.1.1,c.26.1.1 16922,31589 2g8mA 264 5.24e+01 1qqqA 264 5.25e+01 1bkpA d.117.1.1 40931 1sz6B 263 5.26e+01 1j6zA 376 5.29e+01 1yagA c.55.1.1,c.55.1.1 62667,62668 1y9wA 140 5.32e+01 1bnb 38 5.33e+01 1bnb g.9.1.1 44592 1r61A 207 5.33e+01 c.8.8.1 97138 2mtaC 147 5.38e+01 2mtaC a.3.1.1 15908 1zip 217 5.39e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1v54D 147 5.53e+01 f.23.1.1 100325 1evfA 264 5.53e+01 1bkpA d.117.1.1 40932 1nxjA 183 5.56e+01 c.8.7.1 86382 1preA 470 5.61e+01 1preA d.169.1.2,f.8.1.1 42437,43824 1m2tB 263 5.65e+01 b.42.2.1,b.42.2.1 84762,84763 1u3eM 174 5.66e+01 d.4.1.3,d.285.1.1 107640,107641 2occD 147 5.67e+01 1ocrD f.23.1.1 43521 2an1A 292 5.73e+01 2avuE 192 5.75e+01 1uayA 242 5.87e+01 c.2.1.2 88390 1i50I 122 5.89e+01 g.41.3.1,g.41.3.1 61762,61763 2cy2A 174 5.96e+01 1ywzA 175 6.05e+01 2fpeA 62 6.10e+01 2fo3A 125 6.13e+01 1fjgT 106 6.15e+01 1fjfT a.7.6.1 16338 1zin 217 6.17e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1wjvA 79 6.18e+01 1f83A 425 6.26e+01 1f82A d.92.1.7 40306 1a88A 275 6.35e+01 1brt c.69.1.12 34707 2fiyA 309 6.55e+01 2a20A 62 6.57e+01 1i50L 70 6.57e+01 g.41.9.2 61766 1z92B 219 6.58e+01 1theA 260 6.70e+01 1theB d.3.1.1 37056 1o9iA 266 6.76e+01 a.25.1.3 92671 1jkvA 266 6.76e+01 a.25.1.3 71719 1z60A 59 6.87e+01 1sur 215 6.87e+01 1sur c.26.2.2 31620 1e7lA 157 6.89e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1g8kB 133 6.90e+01 1g8jB b.33.1.1 24435 1p6pA 125 6.94e+01 b.60.1.2 87839 1i6xA 209 7.01e+01 a.4.5.4,b.82.3.2 83673,83674 1r6lA 239 7.01e+01 d.14.1.4,d.101.1.1 97153,97154 2dasA 62 7.01e+01 2aq4A 434 7.02e+01 1e53A 59 7.04e+01 1e53A g.49.1.2 45356 1wjpA 107 7.04e+01 1a78A 134 7.04e+01 1c1lA b.29.1.3 24212 1hl9A 449 7.17e+01 b.71.1.3,c.1.8.11 90650,90651 2ezvA 269 7.21e+01 1t3nA 388 7.24e+01 d.240.1.1,e.8.1.7 106363,106364 1q33A 292 7.25e+01 d.113.1.1 95657 1qlnA 883 7.36e+01 1cezA e.8.1.3 43111 1rttA 193 7.36e+01 c.23.5.4 105098 1u24A 337 7.36e+01 1bt0A 76 7.42e+01 1ubi d.15.1.1 37607 4eugA 229 7.50e+01 3eugA c.18.1.1 31019 1egiA 147 7.51e+01 1eggA d.169.1.1 42331 1w1kA 560 7.53e+01 d.58.32.1,d.145.1.1 109059,109060 1lv3A 68 7.62e+01 g.39.1.9 78231 1m2kA 249 7.70e+01 c.31.1.5 84754 1jr7A 311 7.74e+01 b.82.2.3 63255 2fxuA 375 7.81e+01 1xxoA 147 7.83e+01 1ri6A 343 7.89e+01 b.69.11.1 97503 1pvc2 271 7.94e+01 1aym2 1w9aA 147 7.97e+01 1qtwA 285 8.03e+01 1qumA c.1.15.1 29392 1wraA 308 8.04e+01 1jsxA 207 8.05e+01 c.66.1.20 71846 2booA 247 8.05e+01 1ti6B 274 8.05e+01 b.3.5.1,d.58.1.5 106976,106977 1z6uA 150 8.21e+01 2aq6A 147 8.22e+01 2g8oA 264 8.34e+01 1t3qB 788 8.40e+01 d.41.1.1,d.133.1.1 106369,106370 1zkkA 167 8.53e+01 1u00A 227 8.54e+01 2cxkA 95 8.62e+01 1t2dA 322 8.64e+01 c.2.1.5,d.162.1.1 99084,99085 1g5aA 628 8.65e+01 b.71.1.1,c.1.8.1 65152,65153 1ldg 316 8.65e+01 1ceqA c.2.1.5,d.162.1.1 30165,42132 1w6sB 74 8.66e+01 2glfA 450 8.68e+01 1y4hA 188 8.79e+01 1afp 51 8.90e+01 1afp g.26.1.1 44947 2g8yA 385 8.93e+01