Best Alignments for T0347

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1vk1A/T0347-1vk1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vk1A/T0347-1vk1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6040e-033.35e-28 d.268.1.2
1xb4A/T0347-1xb4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xb4A/T0347-1xb4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.7500e-015.72e-10
1xw3A/T0347-1xw3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xw3A/T0347-1xw3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6551e+001.91e-19
1yzsA/T0347-1yzsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yzsA/T0347-1yzsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.4698e+001.06e-17
1u5tC/T0347-1u5tC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u5tC/T0347-1u5tC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.2095e+002.84e-08 a.4.5.54
a.4.5.54
1gs5A/T0347-1gs5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gs5A/T0347-1gs5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5237e+003.10e-11 c.73.1.2
1z5zA/T0347-1z5zA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z5zA/T0347-1z5zA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.3122e+002.58e-05
1p3dA/T0347-1p3dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1p3dA/T0347-1p3dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.1003e+004.86e-11 c.5.1.1
c.59.1.1
c.72.2.1
1t6t1/T0347-1t6t1-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t6t1/T0347-1t6t1-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1969e+011.75e-09
1wd5A/T0347-1wd5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wd5A/T0347-1wd5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2875e+013.24e-11

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001