Best Alignments for T0347

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1vk1A/T0347-1vk1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vk1A/T0347-1vk1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.5759e-045.67e-26 d.268.1.2
1xb4A/T0347-1xb4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xb4A/T0347-1xb4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1062e-015.72e-10
1u5tC/T0347-1u5tC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u5tC/T0347-1u5tC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.9893e-012.84e-08 a.4.5.54
a.4.5.54
1wd5A/T0347-1wd5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wd5A/T0347-1wd5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0808e+003.24e-11
1z5zA/T0347-1z5zA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z5zA/T0347-1z5zA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6411e+002.58e-05
1gs5A/T0347-1gs5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gs5A/T0347-1gs5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0787e+002.40e-08 c.73.1.2
1ekxA/T0347-1ekxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ekxA/T0347-1ekxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1242e+001.13e-04 3csuA c.78.1.1
c.78.1.1
1xw3A/T0347-1xw3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xw3A/T0347-1xw3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.2745e+003.64e-12
1gqyA/T0347-1gqyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gqyA/T0347-1gqyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.3006e+002.76e-13 c.5.1.1
c.59.1.1
c.72.2.1
1iuhA/T0347-1iuhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1iuhA/T0347-1iuhA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.8436e+001.38e-05 d.61.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001