# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vk1A 242 2.02e-02 d.268.1.2 108634 1xb4A 202 3.95e-01 1t5oA 351 2.83e+00 c.124.1.5 106459 2bbhA 269 3.26e+00 1a0cA 438 4.09e+00 1a0cA c.1.15.3 29529 1ne7A 289 4.25e+00 c.124.1.1 91833 1vhnA 318 5.13e+00 c.1.4.1 100693 2cohA 202 5.20e+00 1id1A 153 7.18e+00 1id1A c.2.1.9 62286 1jbwA 428 8.35e+00 c.59.1.2,c.72.2.2 62860,62861 1r1hA 696 8.47e+00 d.92.1.4 104756 1yzsA 121 8.73e+00 1p3dA 475 9.16e+00 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1zz1A 369 9.28e+00 2bneA 241 1.04e+01 8rucI 123 1.06e+01 1rboC d.73.1.1 39629 1xw3A 110 1.12e+01 1k6iA 352 1.12e+01 c.2.1.2 68223 1ars 396 1.14e+01 1ajsA c.67.1.1 34287 2etvA 346 1.16e+01 1vloA 381 1.16e+01 b.44.2.1,d.250.1.1 108838,108839 1zp4A 304 1.18e+01 1zs9A 261 1.33e+01 1o20A 427 1.41e+01 c.82.1.1 86556 1h7eA 245 1.43e+01 c.68.1.13 60717 1yyqA 374 1.45e+01 1qh8A 478 1.45e+01 1qguA c.92.2.3 35633 1dd9A 338 1.56e+01 1dd9A e.13.1.1 43254 1ve1A 304 1.56e+01 1i0dA 332 1.59e+01 1pscA c.1.9.3 61487 1r3sA 367 1.61e+01 c.1.22.1 96963 2eutA 294 1.70e+01 4uagA 437 1.72e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1o5zA 442 1.77e+01 c.59.1.2,c.72.2.2 92530,92531 2b34A 199 1.78e+01 1ek6A 348 1.79e+01 1xel c.2.1.2 29800 1xgkA 352 1.80e+01 1wf3A 301 1.89e+01 1q7fA 286 1.90e+01 b.68.9.1 96036 1guzA 310 1.98e+01 c.2.1.5,d.162.1.1 65586,65587 1exqA 154 2.00e+01 1b9dA c.55.3.2 33646 1m7yA 435 2.01e+01 c.67.1.4 78761 2b5dX 528 2.03e+01 1svmA 377 2.05e+01 1mkzA 172 2.12e+01 c.57.1.1 84998 2g76A 335 2.19e+01 1sk7A 198 2.21e+01 a.132.1.2 105671 1hfuA 503 2.29e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 2b9eA 303 2.48e+01 1ltzA 297 2.50e+01 d.178.1.1 74254 1z0kB 69 2.53e+01 1lm8C 96 2.56e+01 d.42.1.1 74034 1wtaA 275 2.62e+01 2fnjC 96 2.76e+01 2bivA 243 2.82e+01 1odoA 408 2.82e+01 a.104.1.1 92783 1oc2A 348 2.82e+01 c.2.1.2 92765 1ajsA 412 2.96e+01 1ajsA c.67.1.1 34276 1ybdA 239 2.99e+01 1l5wA 796 3.00e+01 c.87.1.4 73605 2faoA 309 3.08e+01 1w98B 283 3.15e+01 1wy9A 147 3.16e+01 2a1fA 247 3.26e+01 1h5rA 293 3.26e+01 c.68.1.6 65623 1fxoA 293 3.32e+01 1g0rA c.68.1.6 34524 1vhvA 268 3.32e+01 c.90.1.1 100704 1juvA 193 3.35e+01 c.71.1.1 90912 1r6uA 437 3.49e+01 c.26.1.1 97163 1p42A 270 3.53e+01 d.14.1.7,d.14.1.7 87754,87755 1j4aA 333 3.55e+01 c.2.1.4,c.23.12.1 71502,71503 1exrA 148 3.63e+01 1cll a.39.1.5 17299 1yeyA 444 3.63e+01 1qgoA 264 3.69e+01 1qgoA c.92.1.2 35596 1dp4A 435 3.72e+01 1dp4A c.93.1.1 35710 1gqvA 135 3.76e+01 d.5.1.1 70376 1gs5A 258 3.76e+01 c.73.1.2 70395 1o98A 511 3.81e+01 c.105.1.1,c.76.1.3 86684,86685 1yz4A 160 3.83e+01 1uwzA 136 3.94e+01 c.97.1.1 108081 1zrn 232 3.97e+01 1qq5A c.108.1.1 43323 1avsA 90 3.99e+01 1cll a.39.1.5 17226 2fj6A 82 4.00e+01 2an9A 207 4.05e+01 2gnoA 305 4.08e+01 1yqgA 263 4.09e+01 1wkyA 464 4.12e+01 1r6dA 337 4.16e+01 c.2.1.2 97148 1pvvA 315 4.18e+01 c.78.1.1,c.78.1.1 95190,95191 1z5zA 271 4.18e+01 1oz2A 331 4.20e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1tzzA 392 4.21e+01 1s2wA 295 4.23e+01 c.1.12.7 98407 1m1nA 491 4.23e+01 c.92.2.3 78417 1qo0D 196 4.30e+01 1qo0D c.23.1.3 31125 1e6bA 221 4.32e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 1thtA 305 4.32e+01 1thtA c.69.1.13 34711 1eceA 358 4.38e+01 1eceA c.1.8.3 28813 1fnnA 389 4.39e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1ttzA 87 4.43e+01 c.47.1.1 107309 1yzvA 204 4.51e+01 1yp2A 451 4.54e+01 5rubA 490 4.61e+01 1burA c.1.14.1,d.58.9.1 29382,39288 1mw9X 592 4.62e+01 e.10.1.1 91480 1lla 628 4.70e+01 1lla a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1pujA 282 4.74e+01 c.37.1.8 88294 1vjeA 166 4.80e+01 d.185.1.2 100807 1s96A 219 4.90e+01 c.37.1.1 98740 1t1uA 639 4.92e+01 1aj2 282 4.95e+01 1aj2 c.1.21.1 29665 1z7xW 461 4.96e+01 1yewC 289 5.03e+01 2bzlA 325 5.04e+01 1psrA 100 5.11e+01 1psrA a.39.1.2 17180 1yal 218 5.11e+01 1cs8A d.3.1.1 37025 1kngA 156 5.14e+01 c.47.1.10 72777 1hc7A 477 5.20e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 2c8mA 262 5.22e+01 1vjnA 220 5.25e+01 d.157.1.4 100825 1qh5A 260 5.30e+01 1qh5A d.157.1.2 42057 1o1yA 239 5.35e+01 c.23.16.1 86554 1lmzA 187 5.40e+01 a.96.1.4 74037 2f3yA 148 5.43e+01 1yfbA 59 5.53e+01 1wl8A 189 5.54e+01 2c27A 315 5.56e+01 1qo2A 241 5.65e+01 1qo2A c.1.2.1 28533 1j8bA 112 5.67e+01 d.222.1.1 77101 1u2wA 122 5.72e+01 1pylA 97 5.76e+01 d.1.1.2 104391 1im5A 180 5.83e+01 c.33.1.3 66211 1gmuA 143 5.85e+01 b.107.1.1,d.58.38.1 65335,65336 1obfO 335 5.86e+01 c.2.1.3,d.81.1.1 86768,86769 1ad1A 266 5.89e+01 1aj2 c.1.21.1 29668 1gt1A 159 6.01e+01 b.60.1.1 90515 1za0A 275 6.02e+01 1zmdA 474 6.08e+01 2oatA 439 6.12e+01 2dkb c.67.1.4 34452 1v7zA 260 6.14e+01 c.125.1.1 100488 1b4pA 217 6.21e+01 a.45.1.1,c.47.1.5 83158,83159 2aawA 222 6.22e+01 1iwmA 186 6.25e+01 b.125.1.2 83758 2ajtA 500 6.26e+01 2a1iA 146 6.29e+01 3pmgA 561 6.34e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1gjnA 153 6.36e+01 a.1.1.2 70191 1vmeA 410 6.39e+01 c.23.5.1,d.157.1.3 108893,108894 1ugmA 125 6.40e+01 d.15.1.3 107827 1oktA 211 6.70e+01 a.45.1.1,c.47.1.5 93272,93273 1o69A 394 6.72e+01 c.67.1.4 92560 1inlA 296 6.75e+01 c.66.1.17 66220 2bklA 695 6.76e+01 1o7jA 327 6.79e+01 c.88.1.1 81140 2bn5A 33 6.79e+01 2c4jA 218 6.83e+01 1xkyA 301 6.85e+01 1x9mA 698 6.89e+01 1tc1A 220 6.89e+01 1tc1A c.61.1.1 34083 1b0nA 111 6.94e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1c7sA 858 6.95e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1yqzA 438 7.01e+01 1svy 114 7.10e+01 1svy d.109.1.1 40831 1c7gA 456 7.17e+01 c.67.1.2 90415 1rd5A 262 7.19e+01 1w9pA 433 7.22e+01 1zklA 353 7.27e+01 2awpA 198 7.27e+01 1atzA 189 7.41e+01 1atzA c.62.1.1 34132 1us0A 316 7.44e+01 c.1.7.1 99850 1z5yE 149 7.49e+01 1k0mA 241 7.65e+01 a.45.1.1,c.47.1.5 67949,67950 1ebfA 358 7.78e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1ihgA 370 7.83e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 2frfA 153 7.84e+01 1m65A 245 7.87e+01 c.6.3.1 84847 1nvvS 481 7.95e+01 a.117.1.1 86279 1r6xA 395 7.98e+01 b.122.1.3,c.26.1.5 97167,97168 1ii7A 333 8.00e+01 1ii7A d.159.1.4 62415 1ir6A 424 8.02e+01 c.107.1.2 71342 2fnaA 357 8.03e+01 1mfgA 95 8.03e+01 b.36.1.1 79043 1r1uA 106 8.03e+01 a.4.5.5 104771 1n8fA 350 8.21e+01 c.1.10.4 85397 1k8qA 377 8.22e+01 c.69.1.6 72177 1gwiA 411 8.27e+01 a.104.1.1 76364 1ri5A 298 8.37e+01 c.66.1.34 97502 2ew8A 249 8.48e+01 1pt6A 213 8.67e+01 c.62.1.1 95091 2c71A 216 8.74e+01 1wrjA 156 8.76e+01 1ako 268 8.83e+01 1ako d.151.1.1 41779 1rk6A 496 8.86e+01 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1ash 150 8.87e+01 1ash a.1.1.2 15622 1ug7A 128 8.88e+01 a.24.24.1 107824 1zpdA 568 8.92e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1i0lA 221 8.98e+01 c.61.1.1 71096 1womA 271 8.99e+01