# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vk1A 242 2.52e-03 d.268.1.2 108634 1yzsA 121 7.34e-01 1xb4A 202 9.00e-01 1xw3A 110 1.04e+00 1wtaA 275 1.36e+00 1p3dA 475 1.46e+00 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1gs5A 258 1.46e+00 c.73.1.2 70395 1ve1A 304 1.95e+00 1t5oA 351 2.08e+00 c.124.1.5 106459 1wkaA 147 3.03e+00 1zp4A 304 3.45e+00 2bneA 241 3.54e+00 2faoA 309 3.91e+00 1us0A 316 4.41e+00 c.1.7.1 99850 1p42A 270 4.79e+00 d.14.1.7,d.14.1.7 87754,87755 1m65A 245 4.91e+00 c.6.3.1 84847 2bbhA 269 5.00e+00 1yp2A 451 5.04e+00 2b34A 199 5.13e+00 1i0dA 332 5.22e+00 1pscA c.1.9.3 61487 1id1A 153 5.31e+00 1id1A c.2.1.9 62286 1xvxA 312 5.38e+00 1s1pA 331 5.75e+00 c.1.7.1 98350 2a1fA 247 6.24e+00 2cvxA 888 6.35e+00 1fxoA 293 6.72e+00 1g0rA c.68.1.6 34524 1exqA 154 6.98e+00 1b9dA c.55.3.2 33646 1zz1A 369 7.05e+00 1obfO 335 7.05e+00 c.2.1.3,d.81.1.1 86768,86769 1jsf 130 7.64e+00 3lzt d.2.1.2 36410 1zvpA 133 7.68e+00 1ybdA 239 7.69e+00 1bf2 750 7.77e+00 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1pv5A 264 7.92e+00 d.251.1.1 95150 1qh5A 260 7.99e+00 1qh5A d.157.1.2 42057 1to6A 371 8.07e+00 c.141.1.1 107170 1oz2A 331 8.24e+00 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1gmuA 143 8.27e+00 b.107.1.1,d.58.38.1 65335,65336 1ur4A 399 8.67e+00 2fhpA 187 8.69e+00 1thtA 305 8.69e+00 1thtA c.69.1.13 34711 1juvA 193 8.80e+00 c.71.1.1 90912 1a0cA 438 8.84e+00 1a0cA c.1.15.3 29529 1o98A 511 9.20e+00 c.105.1.1,c.76.1.3 86684,86685 1q7fA 286 9.20e+00 b.68.9.1 96036 1m1nA 491 9.23e+00 c.92.2.3 78417 1vhwA 253 9.59e+00 c.56.2.1 100706 1o20A 427 9.74e+00 c.82.1.1 86556 1m4vA 204 9.88e+00 b.40.2.2,d.15.6.1 74459,74460 8rucI 123 9.91e+00 1rboC d.73.1.1 39629 1w85A 368 1.01e+01 1wd5A 208 1.02e+01 2bivA 243 1.04e+01 1obdA 306 1.04e+01 d.143.1.1 86767 1x9mA 698 1.06e+01 1k6iA 352 1.09e+01 c.2.1.2 68223 1ars 396 1.12e+01 1ajsA c.67.1.1 34287 1xdpA 687 1.14e+01 1aua 296 1.16e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1t6t1 118 1.18e+01 1tueA 212 1.19e+01 c.37.1.20 107323 2a8yA 270 1.22e+01 1y81A 138 1.23e+01 1v7zA 260 1.23e+01 c.125.1.1 100488 2cohA 202 1.27e+01 1dxeA 256 1.28e+01 1dxeA c.1.12.5 29310 2fdbM 164 1.28e+01 1ex2A 189 1.30e+01 1ex2A c.51.4.2 33225 1yewC 289 1.32e+01 1lm8C 96 1.33e+01 d.42.1.1 74034 1tc1A 220 1.34e+01 1tc1A c.61.1.1 34083 1ir6A 424 1.35e+01 c.107.1.2 71342 1i60A 278 1.36e+01 c.1.15.4 71118 1y0nA 78 1.37e+01 1w98B 283 1.40e+01 1ne7A 289 1.41e+01 c.124.1.1 91833 1im5A 180 1.41e+01 c.33.1.3 66211 1jztA 246 1.43e+01 c.104.1.1 63319 1s2wA 295 1.43e+01 c.1.12.7 98407 1j96A 323 1.44e+01 c.1.7.1 71616 2b49A 287 1.45e+01 1rd5A 262 1.47e+01 1xgkA 352 1.48e+01 2dg5A 366 1.49e+01 2c1iA 431 1.51e+01 1h5rA 293 1.51e+01 c.68.1.6 65623 1ituA 369 1.52e+01 c.1.9.7 71423 1qyiA 384 1.57e+01 c.108.1.13 96595 1i0lA 221 1.60e+01 c.61.1.1 71096 1zd3A 555 1.61e+01 1uwzA 136 1.62e+01 c.97.1.1 108081 1wf3A 301 1.62e+01 1ebfA 358 1.66e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1zmdA 474 1.70e+01 1r3sA 367 1.73e+01 c.1.22.1 96963 1gqvA 135 1.78e+01 d.5.1.1 70376 1o7jA 327 1.79e+01 c.88.1.1 81140 1s14A 194 1.80e+01 d.122.1.2 98329 1ttzA 87 1.81e+01 c.47.1.1 107309 1wzlA 585 1.81e+01 1amuA 563 1.86e+01 1amuA e.23.1.1 43351 2gh1A 301 2.02e+01 1uwcA 261 2.06e+01 c.69.1.17 100101 1lla 628 2.07e+01 1lla a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1odoA 408 2.09e+01 a.104.1.1 92783 1atzA 189 2.10e+01 1atzA c.62.1.1 34132 5rubA 490 2.13e+01 1burA c.1.14.1,d.58.9.1 29382,39288 1pvvA 315 2.13e+01 c.78.1.1,c.78.1.1 95190,95191 1s2oA 244 2.15e+01 1cruA 454 2.18e+01 1c9uA b.68.2.1 27617 2d5cA 263 2.19e+01 1p0hA 318 2.23e+01 d.108.1.1 93866 1egwA 77 2.24e+01 1mnmA d.88.1.1 40234 1frb 315 2.25e+01 1frb c.1.7.1 28665 1b0uA 262 2.26e+01 1b0uA c.37.1.12 32370 1wl4A 397 2.27e+01 1y8aA 332 2.29e+01 1vhnA 318 2.30e+01 c.1.4.1 100693 1eceA 358 2.30e+01 1eceA c.1.8.3 28813 1kwgA 645 2.32e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1np7A 489 2.33e+01 a.99.1.1,c.28.1.1 80677,80678 1qh8A 478 2.35e+01 1qguA c.92.2.3 35633 1za0A 275 2.36e+01 1v93A 296 2.37e+01 c.1.23.1 100532 1a6m 151 2.37e+01 1a6m a.1.1.2 15018 1fnnA 389 2.38e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1zs9A 261 2.39e+01 1w5fA 353 2.39e+01 1z90A 469 2.40e+01 2awpA 198 2.42e+01 1wn5A 130 2.42e+01 1qy5A 269 2.43e+01 d.122.1.1 96573 1cydA 244 2.45e+01 1cydA c.2.1.2 29825 1gnlA 544 2.50e+01 e.26.1.1 70287 1lngA 87 2.50e+01 d.201.1.1 74045 1k6dA 220 2.50e+01 c.124.1.2 72082 1h5uA 842 2.55e+01 1a8i c.87.1.4 60655 1wucA 250 2.56e+01 1zelA 298 2.58e+01 1r1hA 696 2.59e+01 d.92.1.4 104756 1wl8A 189 2.60e+01 1g6gA 127 2.60e+01 1g6gA b.26.1.2 23916 1srrA 124 2.61e+01 1dz3A c.23.1.1 31110 1yyqA 374 2.62e+01 1vliA 385 2.63e+01 b.85.1.1,c.1.10.6 108830,108831 1ka1A 357 2.68e+01 e.7.1.1 68369 2oatA 439 2.69e+01 2dkb c.67.1.4 34452 1bf6A 291 2.71e+01 1pscA c.1.9.3 29065 1x42A 232 2.72e+01 2ch0A 133 2.72e+01 1e7wA 291 2.74e+01 c.2.1.2 59373 1wdiA 345 2.74e+01 1jbwA 428 2.74e+01 c.59.1.2,c.72.2.2 62860,62861 1sv0C 82 2.74e+01 a.60.1.1 106037 1nzjA 298 2.78e+01 c.26.1.1 92377 1pujA 282 2.78e+01 c.37.1.8 88294 1ihoA 283 2.82e+01 1ihoA c.26.1.4 62390 1qo2A 241 2.82e+01 1qo2A c.1.2.1 28533 1pylA 97 2.83e+01 d.1.1.2 104391 1gwiA 411 2.92e+01 a.104.1.1 76364 1iow 306 2.95e+01 1iow c.30.1.2,d.142.1.1 31713,41481 1jfxA 217 2.97e+01 c.1.8.8 62943 2gnoA 305 2.98e+01 1yqgA 263 2.98e+01 1yn3A 98 2.99e+01 1z5yE 149 3.00e+01 1j4aA 333 3.01e+01 c.2.1.4,c.23.12.1 71502,71503 1b9hA 388 3.02e+01 1b9hA c.67.1.4 34488 1o1yA 239 3.02e+01 c.23.16.1 86554 1i1nA 226 3.03e+01 c.66.1.7 71102 2fj6A 82 3.03e+01 1uf5A 303 3.03e+01 d.160.1.2 107808 2c27A 315 3.04e+01 1wrjA 156 3.06e+01 1mkzA 172 3.06e+01 c.57.1.1 84998 1u2wA 122 3.07e+01 2b8tA 223 3.08e+01 1vflA 356 3.09e+01 2a1iA 146 3.10e+01 2c78A 405 3.11e+01 1u9yA 284 3.11e+01 1zrn 232 3.12e+01 1qq5A c.108.1.1 43323 1l6xA 207 3.15e+01 b.1.1.2,b.1.1.2 73642,73643 1qksA 567 3.22e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 2amxA 376 3.24e+01 1ajsA 412 3.27e+01 1ajsA c.67.1.1 34276 1vyrA 364 3.32e+01 c.1.4.1 108906 2cy7A 396 3.33e+01 1twdA 256 3.34e+01 c.1.30.1 107397 1xx1A 285 3.36e+01 2bbrA 195 3.36e+01 1npiA 61 3.36e+01 g.3.7.1 80685 1r1uA 106 3.39e+01 a.4.5.5 104771 2bn5A 33 3.41e+01 1unlD 208 3.41e+01 1sauA 115 3.42e+01 1ek6A 348 3.42e+01 1xel c.2.1.2 29800 1z15A 344 3.42e+01 1efpB 252 3.45e+01 1efvB c.26.2.3 31636 1m4tA 392 3.47e+01 c.95.1.1,c.95.1.1 78617,78618 1mngA 203 3.48e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 2gd9A 189 3.49e+01 1dqpA 230 3.49e+01 1dqnA c.61.1.1 34069 1o2dA 371 3.49e+01 e.22.1.2 86591 1ooeA 236 3.49e+01 c.2.1.2 87196 2ew8A 249 3.49e+01 1y0bA 197 3.55e+01 1oe4A 247 3.58e+01 c.18.1.3 86895 1lvwA 295 3.59e+01 c.68.1.6 84723 1vl7A 157 3.59e+01 b.45.1.1 108732 1q5dA 419 3.63e+01 a.104.1.1 95891 1a9xB 379 3.65e+01 1c3oB c.8.3.1,c.23.16.1 30732,31409 1m3kA 392 3.66e+01 c.95.1.1,c.95.1.1 78565,78566 2aa1B 146 3.69e+01 1kveB 77 3.70e+01 1kveB 2a65A 519 3.71e+01 1orc 71 3.72e+01 1orc a.35.1.2 17054 1hdoA 206 3.75e+01 1he2A c.2.1.2 60965 1ad1A 266 3.80e+01 1aj2 c.1.21.1 29668 2bzlA 325 3.80e+01 1zxxA 319 3.80e+01 1e8yA 966 3.80e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1zpdA 568 3.85e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1zm8A 259 3.88e+01 1z0kB 69 3.89e+01 1tqjA 230 3.90e+01 c.1.2.2 107228 2fnjC 96 3.92e+01 1gt1A 159 3.93e+01 b.60.1.1 90515 1apyA 162 3.95e+01 1apyA d.153.1.5 42004 1iybA 208 3.95e+01 d.124.1.1 90720 1c30B 382 3.96e+01 c.8.3.1,c.23.16.1 30736,31413 1iz6A 138 3.97e+01 b.34.5.2,b.40.4.5 76976,76977 1h2kA 349 3.98e+01 b.82.2.6 76572 2bkaA 242 3.99e+01 1je0A 236 4.00e+01 c.56.2.1 66581 1uc7A 125 4.03e+01 c.47.1.1 99163 4uagA 437 4.07e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1o7fA 469 4.08e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1dbqA 289 4.15e+01 1qpzA c.93.1.1 35666 1u0kA 288 4.16e+01 d.21.1.2,d.21.1.2 107547,107548 1vi4A 174 4.17e+01 c.8.7.1 100731 1j99A 293 4.19e+01 c.37.1.5 71618 1u24A 337 4.19e+01 1dd9A 338 4.21e+01 1dd9A e.13.1.1 43254 1tc5A 194 4.28e+01 c.110.1.1 106752 2bcqA 335 4.29e+01 1gjnA 153 4.30e+01 a.1.1.2 70191 1b4pA 217 4.34e+01 a.45.1.1,c.47.1.5 83158,83159 1uz5A 402 4.36e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 2cy2A 174 4.36e+01 1nrlA 316 4.40e+01 a.123.1.1 92091 1ihgA 370 4.46e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1orrA 347 4.46e+01 c.2.1.2 93460 1udc 338 4.46e+01 1xel c.2.1.2 29785 1zj6A 187 4.51e+01 1yqzA 438 4.52e+01 1dbwA 126 4.55e+01 1dbwA c.23.1.1 31095 1uvjA 664 4.56e+01 e.8.1.6 100045 1tib 269 4.58e+01 3tgl c.69.1.17 34738 1vlbA 907 4.58e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1rwiA 270 4.64e+01 b.68.9.1 97987 1mw9X 592 4.66e+01 e.10.1.1 91480 1w7lA 422 4.70e+01 c.67.1.1 109226 2frfA 153 4.73e+01 1mgrA 99 4.73e+01 d.1.1.2 79106 1z7xW 461 4.73e+01 1yc5A 246 4.74e+01 1m8jA 181 4.80e+01 c.26.1.3 84875 2an9A 207 4.81e+01 1dc1A 323 4.84e+01 1dc1A c.52.1.11 33321 1ro2A 216 4.92e+01 d.264.1.2 97665 2c8mA 262 4.93e+01 1qopA 268 4.93e+01 2tysA c.1.2.4 28570 1r1tA 122 4.94e+01 a.4.5.5 104769 2abqA 306 4.97e+01 2bwnA 401 4.98e+01 1wzaA 488 4.98e+01 2etvA 346 4.98e+01 2ckiA 262 4.99e+01 2cc0A 195 5.00e+01 1w2lA 99 5.00e+01 1bs0A 384 5.01e+01 1bs0A c.67.1.4 34490 2c0rA 362 5.04e+01 1dptA 117 5.05e+01 1dptA d.80.1.3 39862 1wdpA 495 5.06e+01 1womA 271 5.06e+01 1n3lA 372 5.06e+01 c.26.1.1 79966 1ro0A 216 5.07e+01 d.264.1.2 97664 1lc5A 364 5.11e+01 c.67.1.1 73827 1xi1A 575 5.13e+01 1yb3A 175 5.14e+01 1qi9A 556 5.14e+01 1qhbA a.111.1.2 19053 2gasA 307 5.15e+01 3tgl 269 5.16e+01 3tgl c.69.1.17 34733 1svy 114 5.16e+01 1svy d.109.1.1 40831 1qb7A 236 5.18e+01 1qb7A c.61.1.1 34087 1l0qA 391 5.18e+01 b.1.3.1,b.69.2.3 77644,77645 2pia 321 5.19e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2erfA 209 5.19e+01 1mjfA 281 5.26e+01 c.66.1.17 79198 2b9eA 303 5.27e+01 3pmgA 561 5.28e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1t3tA 1303 5.32e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 2g76A 335 5.32e+01 2c7pA 327 5.34e+01 1r6uA 437 5.35e+01 c.26.1.1 97163 3thiA 371 5.35e+01 2thiA c.94.1.1 35792 1mvoA 136 5.35e+01 c.23.1.1 79513 1w1hA 151 5.39e+01 1wkyA 464 5.39e+01 2cw9A 194 5.40e+01 1ug7A 128 5.43e+01 a.24.24.1 107824 1nu0A 138 5.43e+01 c.55.3.8 92165 1i1qB 192 5.45e+01 1qdlB c.23.16.1 61544 2c4jA 218 5.46e+01 1vi2A 300 5.47e+01 c.2.1.7,c.58.1.5 100726,100727 1vq2A 193 5.48e+01 1yzvA 204 5.51e+01 1vr5A 547 5.53e+01 1yz1A 174 5.54e+01 1y7lA 316 5.54e+01 1gteA 1025 5.59e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2g0uA 92 5.62e+01 1xkyA 301 5.63e+01 2bryA 497 5.64e+01 1xrtA 467 5.65e+01 1zvtA 256 5.66e+01 1zbxB 141 5.66e+01 1m32A 366 5.67e+01 c.67.1.3 78508 1kafA 108 5.67e+01 d.199.1.1 68372 1s5dA 240 5.72e+01 d.166.1.1 98541 1h1yA 228 5.72e+01 c.1.2.2 76506 1knwA 425 5.75e+01 b.49.2.3,c.1.6.1 90969,90970 1qjcA 158 5.77e+01 1b6tA c.26.1.3 63328 1tzzA 392 5.78e+01 1orvA 728 5.78e+01 b.70.3.1,c.69.1.24 87354,87355 1zu4A 320 5.91e+01 1nnhA 294 5.92e+01 d.104.1.1 92005 2azpA 318 5.93e+01 1t1uA 639 5.93e+01 1u55A 188 5.95e+01 d.278.1.1 107677 1kfcA 268 5.97e+01 c.1.2.4 77371 2cbuA 468 5.98e+01 1rlmA 271 5.99e+01 1iukA 140 5.99e+01 c.2.1.8 83712 1y9aA 360 6.01e+01 1wzcA 249 6.09e+01 1o5zA 442 6.10e+01 c.59.1.2,c.72.2.2 92530,92531 1jwiB 125 6.17e+01 d.169.1.1 67384 1e4mM 501 6.18e+01 1e70M c.1.8.4 59226 1e8gA 560 6.20e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 2fbwA 621 6.21e+01 1o58A 303 6.23e+01 c.79.1.1 92491 1agi 125 6.26e+01 7rsa d.5.1.1 37303 2rslA 140 6.28e+01 2rslA c.53.1.1 33345 1xx6A 191 6.28e+01 1cl8A 276 6.29e+01 1ckqA c.52.1.1 33230 1hq0A 295 6.30e+01 1hzgA d.194.1.1 61122 1bif 469 6.30e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1m7yA 435 6.32e+01 c.67.1.4 78761 1l3kA 196 6.34e+01 d.58.7.1,d.58.7.1 73539,73540 1h6fA 193 6.35e+01 b.2.5.4 70901 1sfsA 240 6.35e+01 c.1.8.8 98846 2fiyA 309 6.36e+01 1wi9A 72 6.37e+01 1js8A 394 6.38e+01 a.86.1.1,b.112.1.1 67219,67220 1jg5A 83 6.39e+01 d.205.1.1 66666 1hw1A 239 6.41e+01 1e2xA 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