# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vk1A 242 7.25e-03 d.268.1.2 108634 1xb4A 202 2.81e-01 1u5tC 202 4.03e-01 a.4.5.54,a.4.5.54 107688,107689 1z63A 500 1.55e+00 1r1hA 696 1.57e+00 d.92.1.4 104756 1yy7A 213 1.63e+00 1u46A 291 1.72e+00 d.144.1.7 107656 1dmtA 696 1.77e+00 1dmtA d.92.1.4 40296 1zs9A 261 2.51e+00 1z5zA 271 2.65e+00 1o6dA 163 3.05e+00 c.116.1.3 92567 1ne7A 289 3.86e+00 c.124.1.1 91833 1d9tA 289 3.90e+00 1deaA 1rwiA 270 4.48e+00 b.68.9.1 97987 1q7fA 286 5.37e+00 b.68.9.1 96036 1s2oA 244 5.40e+00 2g3bA 208 6.40e+00 2fa8A 105 6.54e+00 1t6t1 118 7.10e+00 1wzzA 334 9.59e+00 1zq6A 359 1.01e+01 1w98B 283 1.05e+01 1iwmA 186 1.06e+01 b.125.1.2 83758 1z6aA 500 1.12e+01 1yzxA 226 1.12e+01 6ldh 330 1.14e+01 3ldh c.2.1.5,d.162.1.1 30161,42128 1xhnA 184 1.22e+01 1b4pA 217 1.40e+01 a.45.1.1,c.47.1.5 83158,83159 1yh1A 359 1.40e+01 1pswA 348 1.41e+01 c.87.1.7 88287 2fmlA 273 1.73e+01 1v58A 241 1.83e+01 c.47.1.9,d.17.3.1 108371,108372 1bx1A 314 1.95e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1xkqA 280 2.00e+01 1fnc 314 2.13e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1agi 125 2.28e+01 7rsa d.5.1.1 37303 1fnd 314 2.36e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 2gfnA 209 2.44e+01 1k87A 669 2.50e+01 a.176.1.1,c.1.23.2 77286,77287 1nnhA 294 2.54e+01 d.104.1.1 92005 1ihgA 370 2.55e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1q2zA 120 2.81e+01 a.118.19.1 95656 1xvxA 312 2.88e+01 1qycA 308 2.98e+01 c.2.1.2 96581 2aqwA 332 2.99e+01 1k99A 99 3.05e+01 a.21.1.1 68341 1iuhA 198 3.12e+01 d.61.1.2 83711 1ignA 246 3.15e+01 1ignA a.4.1.6,a.4.1.6 16048,16049 2fl7A 232 3.17e+01 2bnfB 241 3.27e+01 1p32A 209 3.36e+01 1p32A d.25.1.1 38379 1wpbA 172 3.45e+01 2a0fA 310 3.48e+01 1dl5A 317 3.53e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1io7A 368 3.63e+01 1f4tA a.104.1.1 18971 1rj9A 304 3.69e+01 a.24.13.1,c.37.1.10 97553,97554 1ex2A 189 3.70e+01 1ex2A c.51.4.2 33225 1i1nA 226 3.72e+01 c.66.1.7 71102 2fdsA 352 3.72e+01 1y88A 199 3.83e+01 3csuA 310 3.83e+01 3csuA c.78.1.1,c.78.1.1 35094,35095 1gqvA 135 3.93e+01 d.5.1.1 70376 1evlA 401 3.95e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 2bv2A 83 3.97e+01 1gs5A 258 3.98e+01 c.73.1.2 70395 2b7aA 293 3.99e+01 2byoA 207 4.00e+01 1bm9A 122 4.01e+01 1bm9A a.4.5.7 16116 2bneA 241 4.02e+01 2genA 197 4.04e+01 1yviA 149 4.05e+01 1z6bA 154 4.06e+01 1xriA 151 4.07e+01 1l0wA 580 4.09e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1vi2A 300 4.16e+01 c.2.1.7,c.58.1.5 100726,100727 2b5aA 77 4.32e+01 1q1hA 110 4.33e+01 a.4.5.41 95580 1exrA 148 4.52e+01 1cll a.39.1.5 17299 1cy5A 97 4.58e+01 1cy5A a.77.1.3 18430 1hi2A 135 4.73e+01 7rsa d.5.1.1 61057 1ngr 85 4.84e+01 1ngr a.77.1.2 18422 1e7lA 157 4.84e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 2fkcA 247 4.90e+01 1pd21 199 4.99e+01 1pd21 2d2eA 250 5.02e+01 1rw2A 152 5.05e+01 a.118.19.1 97961 1fiqC 763 5.08e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 1vl7A 157 5.10e+01 b.45.1.1 108732 2gp5A 349 5.28e+01 1b7gO 340 5.45e+01 1b7gO c.2.1.3,d.81.1.1 29992,39907 1dyoA 160 5.60e+01 1dyoA b.18.1.7 23771 2g40A 224 5.78e+01 1y9kA 157 5.79e+01 1dk8A 147 5.91e+01 1agrE a.91.1.1 18548 1xnfA 275 5.93e+01 1lmzA 187 5.93e+01 a.96.1.4 74037 2g0cA 76 5.94e+01 1tig 94 5.97e+01 1tig d.68.1.1 39566 1jug 125 5.99e+01 3lzt d.2.1.2 36587 1y6zA 263 6.00e+01 1gjnA 153 6.01e+01 a.1.1.2 70191 2carA 196 6.03e+01 1dwtA 153 6.04e+01 1a6m a.1.1.2 15190 1wn0A 145 6.05e+01 1g7oA 215 6.06e+01 1g7oA a.45.1.1,c.47.1.5 60332,60333 1dp4A 435 6.12e+01 1dp4A c.93.1.1 35710 1ir3A 306 6.13e+01 1fmk d.144.1.7 41702 1n3yA 198 6.17e+01 c.62.1.1 79976 1cruA 454 6.20e+01 1c9uA b.68.2.1 27617 1p4oA 322 6.23e+01 d.144.1.7 87775 1qysA 106 6.23e+01 k.41.1.1 96603 1ug7A 128 6.28e+01 a.24.24.1 107824 1mai 131 6.32e+01 1mai b.55.1.1 26951 1ckeA 227 6.32e+01 1ckeA c.37.1.1 31846 1mp8A 281 6.53e+01 d.144.1.7 91384 2cohA 202 6.57e+01 2f3yA 148 6.63e+01 1vecA 206 6.66e+01 c.37.1.19 100575 1mvcA 240 6.70e+01 a.123.1.1 79499 1w36B 1180 6.70e+01 1lnzA 342 6.71e+01 b.117.1.1,c.37.1.8 78112,78113 1bvqA 141 6.73e+01 1bvqA d.38.1.1 38542 1lz1 130 6.77e+01 3lzt d.2.1.2 36415 1n1cA 217 6.87e+01 a.184.1.1 85254 1nw1A 429 6.91e+01 d.144.1.8 86286 1yal 218 6.91e+01 1cs8A d.3.1.1 37025 1jr5A 90 6.95e+01 a.150.1.1 67113 1ynmA 247 7.07e+01 2frfA 153 7.08e+01 2ghsA 326 7.08e+01 1wxcA 281 7.10e+01 1jlwA 219 7.12e+01 a.45.1.1,c.47.1.5 71741,71742 1vloA 381 7.24e+01 b.44.2.1,d.250.1.1 108838,108839 1tq8A 163 7.27e+01 c.26.2.4 107204 1lxnA 99 7.29e+01 d.58.48.1 84737 1xyiA 66 7.36e+01 1lo7A 141 7.47e+01 d.38.1.1 74144 1eceA 358 7.55e+01 1eceA c.1.8.3 28813 1bo1A 416 7.55e+01 1bo1A d.143.1.2 41591 1s72I 162 7.59e+01 a.4.7.1 105328 1jdpA 441 7.72e+01 c.93.1.1 62906 1p9kA 79 7.80e+01 d.66.1.6 94392 1auvA 311 7.80e+01 1auvA c.30.1.5,d.142.1.3 31723,41558 3thiA 371 7.85e+01 2thiA c.94.1.1 35792 1pjr 724 7.92e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1wtyA 119 8.03e+01 1r9dA 787 8.04e+01 c.7.1.1 104865 1iw0A 215 8.07e+01 a.132.1.1 83720 1khyA 148 8.08e+01 a.174.1.1 77410 1xxlA 239 8.15e+01 2g0wA 296 8.16e+01 2if1 126 8.26e+01 2if1 d.64.1.1 39547 2bf6A 449 8.32e+01 1cfzA 162 8.32e+01 1cfzA c.56.1.1 33754 1azpA 66 8.42e+01 1azpA b.34.13.1 37467 1jsf 130 8.44e+01 3lzt d.2.1.2 36410 2erfA 209 8.48e+01 1h1nA 305 8.54e+01 c.1.8.3 70855 1f02T 66 8.57e+01 1f02T j.67.1.1 46360 1g8kA 825 8.64e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1wf3A 301 8.64e+01 1vplA 256 8.64e+01 1dugA 234 8.65e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1nz6A 101 8.68e+01 a.2.3.1 86441 1fzcA 87 8.70e+01 1fzcA h.1.8.1 45590 2fxaA 207 8.79e+01 1oafA 261 8.87e+01 a.93.1.1 86734 2fq4A 192 8.95e+01 1psrA 100 8.97e+01 1psrA a.39.1.2 17180 1xw2A 405 8.98e+01