# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vk1A 242 9.89e-03 d.268.1.2 108634 1u5tC 202 1.99e-01 a.4.5.54,a.4.5.54 107688,107689 1xb4A 202 2.67e-01 1fgs 428 2.28e+00 1fgs c.59.1.2,c.72.2.2 33959,34962 2bbhA 269 3.71e+00 1p3dA 475 4.45e+00 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1ne7A 289 4.50e+00 c.124.1.1 91833 1d9tA 289 4.66e+00 1deaA 2cohA 202 5.02e+00 1zz1A 369 5.15e+00 1zp4A 304 7.25e+00 1a0cA 438 7.40e+00 1a0cA c.1.15.3 29529 1h7eA 245 8.23e+00 c.68.1.13 60717 1t5oA 351 8.67e+00 c.124.1.5 106459 1jbwA 428 9.10e+00 c.59.1.2,c.72.2.2 62860,62861 1vhnA 318 9.11e+00 c.1.4.1 100693 2aelA 374 9.34e+00 1kiyA 374 9.51e+00 a.128.1.5 72555 2a0fA 310 9.53e+00 3csuA 310 1.01e+01 3csuA c.78.1.1,c.78.1.1 35094,35095 1jdrA 294 1.04e+01 1ryc a.93.1.1 62908 8rucI 123 1.06e+01 1rboC d.73.1.1 39629 1yyqA 374 1.07e+01 1ve1A 304 1.17e+01 2b5dX 528 1.18e+01 1vloA 381 1.24e+01 b.44.2.1,d.250.1.1 108838,108839 1qisA 396 1.29e+01 1ajsA c.67.1.1 34284 1svmA 377 1.37e+01 1dseA 292 1.40e+01 1ryc a.93.1.1 59130 1dd9A 338 1.41e+01 1dd9A e.13.1.1 43254 1ars 396 1.42e+01 1ajsA c.67.1.1 34287 1id1A 153 1.42e+01 1id1A c.2.1.9 62286 1l2uA 245 1.44e+01 c.1.2.3 73516 1exqA 154 1.51e+01 1b9dA c.55.3.2 33646 1o20A 427 1.59e+01 c.82.1.1 86556 1ynuA 473 1.63e+01 1n25A 368 1.75e+01 c.37.1.20 85264 1uroA 367 1.76e+01 1uroA c.1.22.1 29675 2bp1A 360 1.79e+01 1wtaA 275 1.79e+01 1r3sA 367 1.80e+01 c.1.22.1 96963 1gv3A 248 1.81e+01 a.2.11.1,d.44.1.1 70585,70586 1r1hA 696 1.89e+01 d.92.1.4 104756 1qycA 308 1.95e+01 c.2.1.2 96581 1qh8A 478 1.97e+01 1qguA c.92.2.3 35633 1dmtA 696 1.98e+01 1dmtA d.92.1.4 40296 1iuhA 198 2.00e+01 d.61.1.2 83711 1mkzA 172 2.03e+01 c.57.1.1 84998 1zs9A 261 2.05e+01 1z0kB 69 2.10e+01 2etvA 346 2.21e+01 1ahxA 396 2.21e+01 1ajsA c.67.1.1 34293 1yzsA 121 2.24e+01 1q7fA 286 2.25e+01 b.68.9.1 96036 1wf3A 301 2.26e+01 1ek6A 348 2.27e+01 1xel c.2.1.2 29800 1a4yA 460 2.30e+01 1a4yA c.10.1.1 30852 1z5zA 271 2.30e+01 1lnzA 342 2.30e+01 b.117.1.1,c.37.1.8 78112,78113 4uagA 437 2.37e+01 4uagA c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1k6xA 352 2.48e+01 c.2.1.2 68238 1ajsA 412 2.48e+01 1ajsA c.67.1.1 34276 1vsd 152 2.48e+01 1cxqA c.55.3.2 33625 1xw4X 110 2.51e+01 1wr7A 41 2.62e+01 1z53A 294 2.69e+01 1zbyA 294 2.69e+01 1g4yR 148 2.70e+01 1cll a.39.1.5 60252 1i0dA 332 2.75e+01 1pscA c.1.9.3 61487 1ltzA 297 2.76e+01 d.178.1.1 74254 1sk7A 198 2.78e+01 a.132.1.2 105671 1vl6A 388 2.80e+01 c.2.1.7,c.58.1.3 108724,108725 2b34A 199 2.81e+01 1o5zA 442 2.81e+01 c.59.1.2,c.72.2.2 92530,92531 1xgkA 352 2.92e+01 1za0A 275 2.94e+01 1xw3A 110 3.00e+01 1mkrA 294 3.04e+01 a.93.1.1 84997 2eutA 294 3.07e+01 1xriA 151 3.11e+01 1juvA 193 3.12e+01 c.71.1.1 90912 1v5xA 203 3.13e+01 c.1.2.4 100377 2bivA 243 3.36e+01 1vbkA 307 3.46e+01 1y9kA 157 3.48e+01 1w98B 283 3.51e+01 2bneA 241 3.56e+01 2gnoA 305 3.60e+01 1z6aA 500 3.61e+01 1dp4A 435 3.69e+01 1dp4A c.93.1.1 35710 1yeyA 444 3.70e+01 2g76A 335 3.75e+01 1gs5A 258 3.82e+01 c.73.1.2 70395 1yzvA 204 3.84e+01 1lla 628 3.84e+01 1lla a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 2bnfB 241 3.85e+01 1yqgA 263 3.88e+01 1l5wA 796 3.90e+01 c.87.1.4 73605 1m7yA 435 3.93e+01 c.67.1.4 78761 1hzyA 332 3.96e+01 1pscA c.1.9.3 61468 2faoA 309 4.02e+01 1lm8C 96 4.06e+01 d.42.1.1 74034 1odoA 408 4.09e+01 a.104.1.1 92783 1guzA 310 4.11e+01 c.2.1.5,d.162.1.1 65586,65587 1exrA 148 4.15e+01 1cll a.39.1.5 17299 1h5rA 293 4.17e+01 c.68.1.6 65623 1gqvA 135 4.24e+01 d.5.1.1 70376 1hi2A 135 4.24e+01 7rsa d.5.1.1 61057 1kepA 348 4.24e+01 c.2.1.2 68536 1oc2A 348 4.29e+01 c.2.1.2 92765 1hfuA 503 4.31e+01 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1r6uA 437 4.37e+01 c.26.1.1 97163 2fnjC 96 4.39e+01 1mw9X 592 4.43e+01 e.10.1.1 91480 1zoyA 622 4.44e+01 1wy9A 147 4.57e+01 1pvvA 315 4.57e+01 c.78.1.1,c.78.1.1 95190,95191 1vmeA 410 4.64e+01 c.23.5.1,d.157.1.3 108893,108894 1eqjA 511 4.69e+01 1ejjA c.105.1.1,c.76.1.3 59495,59496 1zrn 232 4.69e+01 1qq5A c.108.1.1 43323 1tzzA 392 4.73e+01 1zmdA 474 4.85e+01 1oz2A 331 4.86e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1mgpA 313 4.87e+01 c.119.1.1 79098 1o7jA 327 4.89e+01 c.88.1.1 81140 1ihgA 370 4.98e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1yp2A 451 4.98e+01 1gmuA 143 5.06e+01 b.107.1.1,d.58.38.1 65335,65336 1vhvA 268 5.16e+01 c.90.1.1 100704 1fmcA 255 5.32e+01 1cydA c.2.1.2 29856 1lmzA 187 5.35e+01 a.96.1.4 74037 1o98A 511 5.40e+01 c.105.1.1,c.76.1.3 86684,86685 1wkyA 464 5.54e+01 1zmbA 290 5.66e+01 1thtA 305 5.67e+01 1thtA c.69.1.13 34711 1yz4A 160 5.71e+01 1eceA 358 5.72e+01 1eceA c.1.8.3 28813 2a1iA 146 5.75e+01 1u24A 337 5.78e+01 1ir6A 424 5.78e+01 c.107.1.2 71342 1qo0D 196 5.79e+01 1qo0D c.23.1.3 31125 1fxoA 293 5.80e+01 1g0rA c.68.1.6 34524 1t1uA 639 5.86e+01 1r6dA 337 5.92e+01 c.2.1.2 97148 2fnaA 357 5.92e+01 1f4qA 165 6.05e+01 1alvA a.39.1.8 17360 1ebfA 358 6.10e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1womA 271 6.16e+01 2f3yA 148 6.46e+01 2ffjA 300 6.48e+01 2b9eA 303 6.54e+01 1cf2O 337 6.56e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1wl8A 189 6.65e+01 1ako 268 6.65e+01 1ako d.151.1.1 41779 1avsA 90 6.66e+01 1cll a.39.1.5 17226 2fj6A 82 6.71e+01 1pujA 282 6.76e+01 c.37.1.8 88294 2d5cA 263 6.86e+01 1wxdA 263 6.93e+01 1vjeA 166 6.98e+01 d.185.1.2 100807 1ttzA 87 6.98e+01 c.47.1.1 107309 1innA 166 6.98e+01 1j98A d.185.1.2 62608 2bzlA 325 7.00e+01 1m1nA 491 7.03e+01 c.92.2.3 78417 1smtA 122 7.04e+01 1smtA a.4.5.5 16109 5rubA 490 7.15e+01 1burA c.1.14.1,d.58.9.1 29382,39288 2cy0A 263 7.18e+01 1j4aA 333 7.31e+01 c.2.1.4,c.23.12.1 71502,71503 1ri5A 298 7.33e+01 c.66.1.34 97502 1qh3A 260 7.39e+01 1qh5A d.157.1.2 42059 1n8fA 350 7.48e+01 c.1.10.4 85397 2c8mA 262 7.50e+01 1yewC 289 7.54e+01 1yioA 208 7.55e+01 1b0nA 111 7.63e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1y7lA 316 7.66e+01 1k1xA 659 7.77e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1k9sA 237 7.78e+01 c.56.2.1 68359 1qh5A 260 7.80e+01 1qh5A d.157.1.2 42057 1b8gA 429 7.85e+01 1b8gA c.67.1.4 34499 1z63A 500 7.86e+01 1mlg 154 7.87e+01 1a6m a.1.1.2 15104 1e6bA 221 7.87e+01 1e6bA a.45.1.1,c.47.1.5 59294,59295 1zklA 353 7.88e+01 1bkdS 439 7.89e+01 1bkdS a.117.1.1 19111 1gjnA 153 7.92e+01 a.1.1.2 70191 1gwiA 411 7.97e+01 a.104.1.1 76364 2bn5A 33 8.04e+01 1j8bA 112 8.10e+01 d.222.1.1 77101 1pd21 199 8.16e+01 1pd21 1d3cA 686 8.20e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1vcoA 550 8.25e+01 c.23.16.1,c.37.1.10 108508,108509 1obfO 335 8.28e+01 c.2.1.3,d.81.1.1 86768,86769 1hn2A 159 8.29e+01 b.60.1.1 65890 1gt1A 159 8.29e+01 b.60.1.1 90515 1jug 125 8.37e+01 3lzt d.2.1.2 36587 1hw1A 239 8.38e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1qmqA 414 8.57e+01 1phd a.104.1.1 18907 1s2wA 295 8.58e+01 c.1.12.7 98407 1afrA 345 8.60e+01 1afrA a.25.1.2 16805 2c27A 315 8.60e+01 1ybdA 239 8.75e+01 1uwzA 136 8.75e+01 c.97.1.1 108081 1im5A 180 8.79e+01 c.33.1.3 66211 1apxA 249 8.82e+01 1ryc a.93.1.1 18669 1qo2A 241 8.83e+01 1qo2A c.1.2.1 28533 1s9uA 207 8.85e+01 a.184.1.1 105390 3pmgA 561 8.85e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1bf6A 291 8.88e+01 1pscA c.1.9.3 29065 1laxA 370 8.90e+01 c.94.1.1 84576