Best Alignments for T0347

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1xb4A/T0347-1xb4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xb4A/T0347-1xb4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5376e+003.38e-05
1u5tC/T0347-1u5tC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u5tC/T0347-1u5tC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.7180e+008.00e-04 a.4.5.54
a.4.5.54
1gawA/1fnc-T0347-fssp-local-adpstyle5.a2m 1gawA/1fnc-T0347-fssp-local-adpstyle5.al 1.0124e+018.61e+02 1fnc b.43.4.2
c.25.1.1
1t70A/T0347-1t70A-t2k-local-adpstyle1.a2m 1t70A/T0347-1t70A-t2k-local-adpstyle1.al 1.0627e+014.13e+00
1dgsA/T0347-1dgsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dgsA/T0347-1dgsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0978e+014.05e-02 1dgsA a.60.2.2
b.40.4.6
d.142.2.2
1ne7A/T0347-1ne7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ne7A/T0347-1ne7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1024e+018.00e-04 c.124.1.1
1zs9A/T0347-1zs9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zs9A/T0347-1zs9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2075e+013.86e+00
1iuhA/T0347-1iuhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1iuhA/T0347-1iuhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4955e+011.46e-04 d.61.1.2
1yj5A/T0347-1yj5A-t06-global-adpstyle1.a2m 1yj5A/T0347-1yj5A-t06-global-adpstyle1.al 1.6174e+011.39e-02
1tsjA/T0347-1tsjA-t04-global-adpstyle1.a2m 1tsjA/T0347-1tsjA-t04-global-adpstyle1.al 2.0437e+013.22e-01

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001