# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xb4A 202 5.27e-01 1u5tC 202 5.68e-01 a.4.5.54,a.4.5.54 107688,107689 1iuhA 198 9.16e-01 d.61.1.2 83711 2fhfA 1083 1.63e+00 1t7pA 698 2.49e+00 1t7pA c.55.3.5,e.8.1.1 33712,43005 1x9mA 698 2.87e+00 1dmtA 696 4.00e+00 1dmtA d.92.1.4 40296 1r1hA 696 4.00e+00 d.92.1.4 104756 1m70A 190 4.06e+00 a.3.1.4,a.3.1.4 91200,91201 1kx5B 102 4.10e+00 a.22.1.1 77594 1oz2A 331 4.46e+00 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1c8kA 842 4.71e+00 1a8i c.87.1.4 35491 1z0kB 69 5.00e+00 1gpb 842 5.63e+00 1a8i c.87.1.4 35478 1px5A 349 6.09e+00 a.160.1.2,d.218.1.6 95277,95278 1ak8 76 7.31e+00 1cll a.39.1.5 17281 1gqvA 135 7.39e+00 d.5.1.1 70376 1g4wR 383 7.43e+00 1g4uS a.24.11.1,c.45.1.2 16644,32692 1hi2A 135 7.43e+00 7rsa d.5.1.1 61057 1fe8A 196 7.66e+00 1atzA c.62.1.1 59783 1etpA 190 7.82e+00 1etpA a.3.1.4,a.3.1.4 15962,15963 1qqyA 130 8.17e+00 3lzt d.2.1.2 36586 1h5uA 842 8.20e+00 1a8i c.87.1.4 60655 2bivA 243 8.30e+00 1f6dA 376 8.41e+00 1f6dA c.87.1.3 35467 1zs9A 261 9.00e+00 1ahpA 797 9.76e+00 1a8i c.87.1.4 35544 1he2A 206 9.78e+00 1he2A c.2.1.2 60966 1w85A 368 1.09e+01 1dgsA 667 1.19e+01 1dgsA a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 1g4yR 148 1.35e+01 1cll a.39.1.5 60252 1a8i 842 1.42e+01 1a8i c.87.1.4 35490 1m2rA 327 1.47e+01 d.144.1.7 84760 1y0vH 146 1.52e+01 1xfxO 149 1.54e+01 1zz1A 369 1.60e+01 1jug 125 1.70e+01 3lzt d.2.1.2 36587 1a6o 332 1.76e+01 1a6o 1vgvA 384 1.77e+01 c.87.1.3 100608 1zac 90 1.82e+01 1ncx a.39.1.5 17236 1osa 148 1.84e+01 1cll a.39.1.5 17300 1i56A 130 1.84e+01 d.2.1.2 66033 1d9tA 289 2.10e+01 1deaA 1ne7A 289 2.13e+01 c.124.1.1 91833 1mlwA 301 2.16e+01 d.178.1.1 79289 1cydA 244 2.25e+01 1cydA c.2.1.2 29825 2es7A 142 2.32e+01 1ylkA 172 2.32e+01 1ef8A 261 2.36e+01 1ef8A c.14.1.3 30921 1xs5A 241 2.43e+01 2a8yA 270 2.44e+01 2b49A 287 2.45e+01 2fx0A 201 2.46e+01 1tn4 159 2.50e+01 1ncx a.39.1.5 17248 1fxxA 482 2.58e+01 1fxxA c.55.3.5 33726 1q79A 514 2.59e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1gwcA 230 2.62e+01 a.45.1.1,c.47.1.5 70660,70661 1sk7A 198 2.65e+01 a.132.1.2 105671 1gnlA 544 2.70e+01 e.26.1.1 70287 1abbA 828 2.76e+01 1a8i c.87.1.4 35536 2ew8A 249 2.78e+01 1f5aA 513 2.79e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39337,75835,75836 1a6g 151 3.12e+01 1a6m a.1.1.2 15021 1xuuA 349 3.20e+01 1ahr 146 3.22e+01 1cll a.39.1.5 17287 1nnhA 294 3.23e+01 d.104.1.1 92005 1exqA 154 3.29e+01 1b9dA c.55.3.2 33646 1gntA 553 3.30e+01 e.26.1.1 70290 2gz4A 207 3.35e+01 1e1dA 553 3.35e+01 1e1dA e.26.1.1 43363 2ch0A 133 3.36e+01 1e2uA 553 3.39e+01 1e1dA e.26.1.1 43362 2mgb 154 3.42e+01 1a6m a.1.1.2 15102 1oi1A 221 3.43e+01 b.34.9.3,b.34.9.3 87037,87038 2dfkA 402 3.44e+01 1mbd 153 3.50e+01 1a6m a.1.1.2 15033 1nekA 588 3.50e+01 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1ro2A 216 3.53e+01 d.264.1.2 97665 1m45A 148 3.53e+01 a.39.1.5 78598 1y9kA 157 3.55e+01 1u1jA 765 3.56e+01 c.1.22.2,c.1.22.2 107590,107591 1a6m 151 3.59e+01 1a6m a.1.1.2 15018 2liv 344 3.61e+01 2liv c.93.1.1 35708 1sauA 115 3.63e+01 2aaxA 275 3.65e+01 1mvwC 147 3.70e+01 i.15.1.1 79525 1o1fC 147 3.70e+01 i.15.1.1 80997 1yz4A 160 3.72e+01 1jmxA 494 3.72e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1ksoA 101 3.74e+01 a.39.1.2 72926 1unlD 208 3.74e+01 3thiA 371 3.88e+01 2thiA c.94.1.1 35792 2dg5A 366 3.92e+01 1f3hA 142 3.93e+01 1f3hA g.52.1.1 45381 1zklA 353 3.96e+01 1zrn 232 3.98e+01 1qq5A c.108.1.1 43323 1jud 232 3.99e+01 1qq5A c.108.1.1 43325 1ao3A 187 3.99e+01 1atzA c.62.1.1 34134 1wkqA 164 4.05e+01 c.97.1.2 109393 1ft1A 377 4.07e+01 1ft1A a.118.6.1 19186 2thiA 379 4.08e+01 2thiA c.94.1.1 35794 2erfA 209 4.09e+01 1e6iA 121 4.14e+01 1b91A a.29.2.1 16969 1e7wA 291 4.19e+01 c.2.1.2 59373 1nksA 194 4.27e+01 1nksA c.37.1.1 31886 2mgg 154 4.32e+01 1a6m a.1.1.2 15069 1mod 154 4.33e+01 1a6m a.1.1.2 15107 1orsC 132 4.34e+01 f.14.1.1 87353 102m 154 4.37e+01 1a6m a.1.1.2 15073 1mll 154 4.37e+01 1a6m a.1.1.2 15057 1mlg 154 4.40e+01 1a6m a.1.1.2 15104 1xu9A 286 4.42e+01 2spo 154 4.42e+01 1a6m a.1.1.2 15053 1bzpA 153 4.47e+01 1a6m a.1.1.2 15020 1mlo 154 4.47e+01 1a6m a.1.1.2 15085 1tfzA 424 4.48e+01 d.32.1.3,d.32.1.3 106886,106887 1hhsA 664 4.53e+01 1hi0P e.8.1.6 61045 1o20A 427 4.54e+01 c.82.1.1 86556 1e5mA 416 4.55e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1z15A 344 4.57e+01 1dp4A 435 4.59e+01 1dp4A c.93.1.1 35710 1tn6A 382 4.61e+01 2spl 154 4.62e+01 1a6m a.1.1.2 15047 1k7wA 468 4.66e+01 a.127.1.1 72130 1jvr 137 4.67e+01 1jvr a.61.1.2 18132 1jflA 228 4.69e+01 c.78.2.1,c.78.2.1 71656,71657 1d8dA 377 4.72e+01 1ft1A a.118.6.1 19185 1aihA 170 4.73e+01 1aihA d.163.1.1 42149 1l5wA 796 4.77e+01 c.87.1.4 73605 3cln 148 4.78e+01 1cll a.39.1.5 17286 1apxA 249 4.79e+01 1ryc a.93.1.1 18669 1u5tA 233 4.86e+01 a.4.5.54,a.4.5.54 107684,107685 3kvt 115 4.86e+01 1t1dA d.42.1.2 38642 1mgn 154 4.86e+01 1a6m a.1.1.2 15097 1dcnD 436 4.91e+01 1auwA a.127.1.1 19423 2bn5A 33 5.00e+01 1aerA 205 5.02e+01 1aerA d.166.1.1 42249 1tjvA 474 5.07e+01 a.127.1.1 107054 1om1A 332 5.11e+01 d.144.1.7 93347 1dmaA 214 5.13e+01 1aerA d.166.1.1 42251 2fj6A 82 5.20e+01 1m46A 148 5.27e+01 a.39.1.5 78599 1pylA 97 5.28e+01 d.1.1.2 104391 1za0A 275 5.33e+01 1k1xA 659 5.39e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1b5uA 130 5.49e+01 3lzt d.2.1.2 36453 1b5zA 130 5.58e+01 3lzt d.2.1.2 36567 1jsf 130 5.60e+01 3lzt d.2.1.2 36410 1tqhA 247 5.60e+01 c.69.1.29 107225 1lmt 136 5.61e+01 3lzt d.2.1.2 36416 1b7rA 130 5.62e+01 3lzt d.2.1.2 36436 1jweA 114 5.71e+01 1b79A a.81.1.1 18455 1b7lA 130 5.73e+01 3lzt d.2.1.2 36515 1ebfA 358 5.83e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1p99A 295 5.84e+01 c.94.1.1 94384 1jcqA 382 5.85e+01 a.118.6.1 66504 1b0nA 111 5.87e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1jcrA 377 5.91e+01 a.118.6.1 66506 133l 130 5.94e+01 3lzt d.2.1.2 36524 1q8dA 108 6.01e+01 a.228.1.1 104554 1lngA 87 6.03e+01 d.201.1.1 74045 1edoA 244 6.05e+01 1ybvA c.2.1.2 29896 1b7oA 130 6.05e+01 3lzt d.2.1.2 36491 1xvxA 312 6.06e+01 1zu4A 320 6.09e+01 1n93X 375 6.09e+01 a.206.1.1 91707 1nf3A 195 6.10e+01 c.37.1.8 85594 1hi0P 664 6.11e+01 1hi0P e.8.1.6 61051 2bl0B 145 6.14e+01 1lpuA 332 6.16e+01 d.144.1.7 74177 1b7pA 130 6.16e+01 3lzt d.2.1.2 36551 1ezoA 370 6.18e+01 4mbp c.94.1.1 59539 1eywA 331 6.28e+01 1pscA c.1.9.3 29057 1ld8A 382 6.35e+01 a.118.6.1 73838 1aerB 195 6.38e+01 1aerA d.166.1.1 42250 1u55A 188 6.47e+01 d.278.1.1 107677 1b5wA 130 6.49e+01 3lzt d.2.1.2 36557 1lz1 130 6.49e+01 3lzt d.2.1.2 36415 1z6oM 191 6.50e+01 1e85A 127 6.56e+01 1bbhA a.24.3.2 16549 1udxA 416 6.56e+01 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1k6iA 352 6.64e+01 c.2.1.2 68223 1b7nA 130 6.66e+01 3lzt d.2.1.2 36468 1u1hA 765 6.71e+01 c.1.22.2,c.1.22.2 107580,107581 1dwtA 153 6.73e+01 1a6m a.1.1.2 15190 2an3A 289 6.79e+01 1l4iA 206 6.82e+01 b.1.11.1,b.7.2.1 73564,73565 1b7s 130 6.90e+01 3lzt d.2.1.2 36571 1jq0A 84 6.91e+01 h.3.2.1 71786 1htrP 43 6.92e+01 1htrP b.50.1.2 26852 1iq0A 592 6.96e+01 a.27.1.1,c.26.1.1,d.67.2.1 66257,66258,66259 1b5xA 130 6.96e+01 3lzt d.2.1.2 36550 1b5yA 130 6.97e+01 3lzt d.2.1.2 36570 1b5vA 130 7.02e+01 3lzt d.2.1.2 36563 1b7qA 130 7.04e+01 3lzt d.2.1.2 36549 1zsqA 528 7.13e+01 2f6hX 419 7.14e+01 1lmzA 187 7.17e+01 a.96.1.4 74037 1mym 154 7.17e+01 1a6m a.1.1.2 15054 2gs5A 198 7.17e+01 1yq2A 1024 7.20e+01 1cf2O 337 7.22e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1mznA 240 7.31e+01 a.123.1.1 79704 1j9yA 385 7.35e+01 1j9yA c.1.8.3 62791 2f3yA 148 7.35e+01 1mvcA 240 7.37e+01 a.123.1.1 79499 1ucnA 152 7.40e+01 d.58.6.1 99183 1erjA 393 7.43e+01 1erjA b.69.4.1 27660 1lp4A 332 7.53e+01 d.144.1.7 74170 1te2A 226 7.62e+01 c.108.1.6 106792 1yh6A 179 7.77e+01 1odzA 386 7.81e+01 c.1.8.3 86889 1nktA 922 8.19e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 85830,85831,85832,85833 2gviA 204 8.22e+01 1atzA 189 8.23e+01 1atzA c.62.1.1 34132 1f3mA 80 8.33e+01 1f3mA j.66.1.1 46358 1w98B 283 8.38e+01 1xkpB 124 8.42e+01 1h7wD 1025 8.42e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15686,28631,30327,30612,39010 2f9zC 159 8.48e+01 1o0pA 104 8.48e+01 d.58.7.1 86535 1oe4A 247 8.49e+01 c.18.1.3 86895 1dleA 298 8.53e+01 1dleA b.47.1.2 26312 1i0dA 332 8.55e+01 1pscA c.1.9.3 61487 1oq9A 363 8.57e+01 a.25.1.2 87257 1cgo 127 8.58e+01 1cpq a.24.3.2 16550 103m 154 8.67e+01 1a6m a.1.1.2 15124 2h21A 440 8.68e+01 1m55A 197 8.69e+01 d.89.1.3 74469 1x7yA 400 8.72e+01 1b8fA 509 8.76e+01 1b8fA a.127.1.2 19434 1bd8 156 8.81e+01 1bd8 d.211.1.1 19157 1atzB 189 8.90e+01 1atzA c.62.1.1 34133 1uvjA 664 8.91e+01 e.8.1.6 100045 1gkmA 509 8.92e+01 a.127.1.2 70228 1fjhA 257 8.94e+01 1fjhB c.2.1.2 29870 1gngX 39 8.97e+01 1auwA 468 9.00e+01 1auwA a.127.1.1 19416