# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xb4A 202 1.20e+00 1y9kA 157 2.44e+00 1u5tC 202 2.47e+00 a.4.5.54,a.4.5.54 107688,107689 1yz4A 160 2.58e+00 1zs9A 261 2.70e+00 1k1xA 659 3.02e+00 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1sk7A 198 3.35e+00 a.132.1.2 105671 1d9tA 289 3.76e+00 1deaA 1dgsA 667 3.77e+00 1dgsA a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 1ne7A 289 3.79e+00 c.124.1.1 91833 2gz4A 207 4.47e+00 1g4yR 148 7.44e+00 1cll a.39.1.5 60252 1iuhA 198 9.66e+00 d.61.1.2 83711 1x9mA 698 1.08e+01 1t7pA 698 1.09e+01 1t7pA c.55.3.5,e.8.1.1 33712,43005 1nksA 194 1.12e+01 1nksA c.37.1.1 31886 1z0kB 69 1.16e+01 1glqA 209 1.22e+01 1pgtA a.45.1.1,c.47.1.5 17588,32882 2bivA 243 1.32e+01 1kiyA 374 1.41e+01 a.128.1.5 72555 1r1hA 696 1.41e+01 d.92.1.4 104756 1dmtA 696 1.41e+01 1dmtA d.92.1.4 40296 1kx5B 102 1.42e+01 a.22.1.1 77594 1osa 148 1.43e+01 1cll a.39.1.5 17300 1jfgA 374 1.44e+01 a.128.1.5 66636 1ahr 146 1.44e+01 1cll a.39.1.5 17287 2fhfA 1083 1.46e+01 2ffjA 300 1.49e+01 2aelA 374 1.52e+01 1h7eA 245 1.55e+01 c.68.1.13 60717 1yyqA 374 1.59e+01 1zklA 353 1.65e+01 1zz1A 369 1.67e+01 1oz2A 331 1.69e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1g4wR 383 1.73e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1nekA 588 1.82e+01 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 3cln 148 1.83e+01 1cll a.39.1.5 17286 1wy9A 147 1.92e+01 1exqA 154 2.00e+01 1b9dA c.55.3.2 33646 1jfaA 374 2.14e+01 a.128.1.5 66622 1z6oM 191 2.24e+01 1hi2A 135 2.31e+01 7rsa d.5.1.1 61057 1exrA 148 2.33e+01 1cll a.39.1.5 17299 1gqvA 135 2.44e+01 d.5.1.1 70376 1pd21 199 2.45e+01 1pd21 1cll 148 2.46e+01 1cll a.39.1.5 17263 1qghA 156 2.49e+01 1qghA a.25.1.1 16728 1xriA 151 2.55e+01 1ncx 162 2.60e+01 1ncx a.39.1.5 17222 1top 162 2.60e+01 1ncx a.39.1.5 17223 1a2xA 159 2.62e+01 1ncx a.39.1.5 17251 1cz1A 394 2.72e+01 1cz1A c.1.8.3 28839 1lmzA 187 3.02e+01 a.96.1.4 74037 1tn4 159 3.06e+01 1ncx a.39.1.5 17248 2f3yA 148 3.14e+01 1o20A 427 3.16e+01 c.82.1.1 86556 1bxiB 134 3.28e+01 1bxiB d.4.1.1 37136 1xfxO 149 3.42e+01 1avsA 90 3.51e+01 1cll a.39.1.5 17226 1ylkA 172 3.55e+01 1yy5B 513 3.65e+01 1q7zA 566 3.70e+01 c.1.21.2,c.1.26.1 96090,96091 1ak8 76 3.71e+01 1cll a.39.1.5 17281 1xu9A 286 3.72e+01 2bn5A 33 3.74e+01 1e1dA 553 3.77e+01 1e1dA e.26.1.1 43363 1tfzA 424 3.84e+01 d.32.1.3,d.32.1.3 106886,106887 2ew8A 249 3.85e+01 1mgpA 313 3.92e+01 c.119.1.1 79098 1e2uA 553 4.03e+01 1e1dA e.26.1.1 43362 1gntA 553 4.03e+01 e.26.1.1 70290 1zrn 232 4.17e+01 1qq5A c.108.1.1 43323 1mlwA 301 4.19e+01 d.178.1.1 79289 1jud 232 4.20e+01 1qq5A c.108.1.1 43325 1emvB 134 4.21e+01 1bxiB d.4.1.1 37135 1kq4A 232 4.23e+01 d.207.1.1 68791 2b0tA 738 4.25e+01 2erfA 209 4.27e+01 1o26A 232 4.45e+01 d.207.1.1 86566 1fr2B 134 4.52e+01 d.4.1.1 83257 1gwcA 230 4.53e+01 a.45.1.1,c.47.1.5 70660,70661 2es7A 142 4.58e+01 1b0nA 111 4.60e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1yqgA 263 4.66e+01 1unlD 208 4.67e+01 1mvcA 240 5.01e+01 a.123.1.1 79499 2a6sA 84 5.03e+01 1mznA 240 5.04e+01 a.123.1.1 79704 1mh3A 421 5.16e+01 a.4.1.1,c.94.1.1 79112,79113 1jq0A 84 5.21e+01 h.3.2.1 71786 1qkmA 255 5.32e+01 3erdA a.123.1.1 19309 1lpuA 332 5.43e+01 d.144.1.7 74177 2abbA 364 5.46e+01 1wkqA 164 5.48e+01 c.97.1.2 109393 2fj6A 82 5.49e+01 1jug 125 5.49e+01 3lzt d.2.1.2 36587 1rxqA 178 5.50e+01 a.213.1.1 105118 1zu4A 320 5.50e+01 1etpA 190 5.53e+01 1etpA a.3.1.4,a.3.1.4 15962,15963 1rsgA 516 5.55e+01 1apxA 249 5.71e+01 1ryc a.93.1.1 18669 2gviA 204 5.72e+01 1px5A 349 5.75e+01 a.160.1.2,d.218.1.6 95277,95278 1fjgD 209 5.79e+01 1c05A d.66.1.2 39553 1lp4A 332 5.81e+01 d.144.1.7 74170 1m70A 190 5.84e+01 a.3.1.4,a.3.1.4 91200,91201 1oi1A 221 5.90e+01 b.34.9.3,b.34.9.3 87037,87038 1ae7 119 5.91e+01 1poa a.133.1.2 19553 1aihA 170 5.93e+01 1aihA d.163.1.1 42149 1cf2O 337 5.97e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1ezoA 370 5.99e+01 4mbp c.94.1.1 59539 1dqzA 280 6.09e+01 1dqyA c.69.1.3 34638 1m2rA 327 6.11e+01 d.144.1.7 84760 1he2A 206 6.13e+01 1he2A c.2.1.2 60966 1mwmA 320 6.34e+01 c.55.1.1,c.55.1.1 79580,79581 2bl0B 145 6.34e+01 1q8dA 108 6.37e+01 a.228.1.1 104554 1dts 221 6.41e+01 1byi c.37.1.10 32200 2cmwA 310 6.42e+01 1l5wA 796 6.53e+01 c.87.1.4 73605 2f6hX 419 6.56e+01 1q79A 514 6.59e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1dseA 292 6.62e+01 1ryc a.93.1.1 59130 1dbs 224 6.66e+01 1byi c.37.1.10 32209 1mlg 154 6.69e+01 1a6m a.1.1.2 15104 1myf 153 6.71e+01 1a6m a.1.1.2 15147 1ltqA 301 6.71e+01 c.108.1.9,c.37.1.1 78208,78209 4lbd 267 6.78e+01 2lbd a.123.1.1 19289 1pq9A 253 6.80e+01 a.123.1.1 95004 2lbd 267 6.80e+01 2lbd a.123.1.1 19287 1u24A 337 6.86e+01 1afrA 345 6.87e+01 1afrA a.25.1.2 16805 1x3aA 100 6.88e+01 1oe4A 247 6.89e+01 c.18.1.3 86895 2c7nA 74 6.90e+01 1rypF 233 6.92e+01 1rypF d.153.1.4 41937 1eqcA 394 6.95e+01 1cz1A c.1.8.3 28811 1bm9A 122 6.98e+01 1bm9A a.4.5.7 16116 1qlwA 328 7.07e+01 1qlwA c.69.1.15 34722 1g5yA 238 7.26e+01 1lbd a.123.1.1 60294 1om1A 332 7.27e+01 d.144.1.7 93347 1zac 90 7.34e+01 1ncx a.39.1.5 17236 1pu1A 94 7.36e+01 d.266.1.1 104307 1uvjA 664 7.36e+01 e.8.1.6 100045 1f5aA 513 7.37e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39337,75835,75836 1cydA 244 7.49e+01 1cydA c.2.1.2 29825 1fcyA 236 7.59e+01 2lbd a.123.1.1 19282 1vr0A 247 7.61e+01 1xkqA 280 7.67e+01 1k0nA 241 7.70e+01 a.45.1.1,c.47.1.5 67953,67954 1jmxA 494 7.72e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1ucnA 152 7.72e+01 d.58.6.1 99183 1qg0A 308 7.78e+01 1fnc b.43.4.2,c.25.1.1 25639,31529 1f6dA 376 7.80e+01 1f6dA c.87.1.3 35467 1fe8A 196 7.81e+01 1atzA c.62.1.1 59783 1hhsA 664 7.83e+01 1hi0P e.8.1.6 61045 1hi0P 664 7.84e+01 1hi0P e.8.1.6 61051 1dqyA 283 7.84e+01 1dqyA c.69.1.3 34640 1pgtA 210 7.93e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 1cfzA 162 7.99e+01 1cfzA c.56.1.1 33754 1lkxA 697 8.01e+01 c.37.1.9 73981 2ch0A 133 8.01e+01 1a2g 291 8.01e+01 1ryc a.93.1.1 18620 1x0rA 249 8.04e+01 1mpb 370 8.05e+01 4mbp c.94.1.1 35780 1geqA 248 8.06e+01 2tysA c.1.2.4 28589 1pb6A 212 8.14e+01 a.4.1.9,a.121.1.1 88017,88018 1anf 370 8.14e+01 4mbp c.94.1.1 35776 1cn4C 166 8.28e+01 1eerA a.26.1.2 16847 1lbd 282 8.33e+01 1lbd a.123.1.1 19279 1emy 153 8.45e+01 1a6m a.1.1.2 15204 1ash 150 8.47e+01 1ash a.1.1.2 15622 1sauA 115 8.53e+01 1ahpA 797 8.63e+01 1a8i c.87.1.4 35544 1vgvA 384 8.77e+01 c.87.1.3 100608 4mbp 370 8.83e+01 4mbp c.94.1.1 35777 1w85A 368 8.84e+01 1dp4A 435 8.92e+01 1dp4A c.93.1.1 35710 1k6iA 352 8.96e+01 c.2.1.2 68223 1pmt 203 8.98e+01 1a0fA a.45.1.1,c.47.1.5 17740,33034 1xkpB 124 8.98e+01 1gnlA 544 8.99e+01 e.26.1.1 70287