# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1glqA 209 4.56e-01 1pgtA a.45.1.1,c.47.1.5 17588,32882 1dmtA 696 8.84e-01 1dmtA d.92.1.4 40296 1r1hA 696 9.68e-01 d.92.1.4 104756 1vr0A 247 1.71e+00 1o26A 232 2.06e+00 d.207.1.1 86566 1xhnA 184 2.18e+00 1s1pA 331 2.45e+00 c.1.7.1 98350 1o6dA 163 3.51e+00 c.116.1.3 92567 1kq4A 232 4.26e+00 d.207.1.1 68791 1dgsA 667 4.29e+00 1dgsA a.60.2.2,b.40.4.6,d.142.2.2 17963,25365,41581 1winA 143 4.64e+00 1cfzA 162 5.59e+00 1cfzA c.56.1.1 33754 1u46A 291 5.94e+00 d.144.1.7 107656 1exqA 154 6.99e+00 1b9dA c.55.3.2 33646 1bm9A 122 7.01e+00 1bm9A a.4.5.7 16116 2gp5A 349 8.23e+00 1xb4A 202 9.06e+00 1b4pA 217 9.14e+00 a.45.1.1,c.47.1.5 83158,83159 1pd21 199 9.45e+00 1pd21 1afsA 323 1.02e+01 1frb c.1.7.1 28694 1bvoA 175 1.03e+01 1a3qA b.2.5.3 22457 1zs9A 261 1.06e+01 1y9kA 157 1.18e+01 17gsA 210 1.32e+01 1pgtA a.45.1.1,c.47.1.5 17524,32818 1itg 166 1.34e+01 1b9dA c.55.3.2 33661 1t6t1 118 1.39e+01 2fyxA 143 1.47e+01 1ks9A 291 1.60e+01 a.100.1.7,c.2.1.6 68857,68858 1iuhA 198 1.66e+01 d.61.1.2 83711 1f4kA 122 1.84e+01 1bm9A a.4.5.7 59646 1zq6A 359 1.96e+01 1pgtA 210 1.96e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 2bjfA 329 1.99e+01 1wpbA 172 2.08e+01 1aqwA 209 2.14e+01 1pgtA a.45.1.1,c.47.1.5 17517,32811 1lbkA 208 2.28e+01 a.45.1.1,c.47.1.5 73809,73810 1x7yA 400 2.38e+01 1dcuA 357 2.38e+01 1frpA e.7.1.1 42943 1uekA 275 2.45e+01 d.14.1.5,d.58.26.5 88483,88484 1gz0A 253 2.48e+01 c.116.1.1,d.79.3.3 76391,76392 1xw5A 217 2.50e+01 2c4jA 218 2.52e+01 1xriA 151 2.58e+01 1yh1A 359 2.59e+01 1f44A 324 2.83e+01 a.60.9.1,d.163.1.1 64982,64983 1ckeA 227 2.83e+01 1ckeA c.37.1.1 31846 1i9zA 347 2.87e+01 1i9yA d.151.1.2 62102 2a2rA 210 2.90e+01 1y6zA 263 3.04e+01 1apxA 249 3.06e+01 1ryc a.93.1.1 18669 1mbmA 198 3.09e+01 b.47.1.3 78916 1mznA 240 3.09e+01 a.123.1.1 79704 1cby 259 3.22e+01 1cby d.103.1.1 40705 1i9yA 347 3.23e+01 1i9yA d.151.1.2 62101 1mvcA 240 3.27e+01 a.123.1.1 79499 1bl3A 160 3.33e+01 1b9dA c.55.3.2 33655 18gsA 210 3.41e+01 1pgtA a.45.1.1,c.47.1.5 17528,32822 1y0vH 146 3.47e+01 1rypF 233 3.48e+01 1rypF d.153.1.4 41937 2fa8A 105 3.71e+01 1ixmA 192 3.74e+01 1ixmA d.123.1.1 41114 2g3bA 208 3.78e+01 1yy7A 213 3.78e+01 2fwuA 157 3.78e+01 1b5yA 130 3.83e+01 3lzt d.2.1.2 36570 1iwmA 186 3.87e+01 b.125.1.2 83758 2a6aA 218 3.90e+01 1nrjA 158 3.96e+01 d.110.4.4 86124 1b7rA 130 4.16e+01 3lzt d.2.1.2 36436 1n1jB 97 4.27e+01 a.22.1.3 79814 1b5uA 130 4.37e+01 3lzt d.2.1.2 36453 1jsf 130 4.37e+01 3lzt d.2.1.2 36410 1lz1 130 4.40e+01 3lzt d.2.1.2 36415 1u5tC 202 4.42e+01 a.4.5.54,a.4.5.54 107688,107689 1zklA 353 4.45e+01 1fjgT 106 4.46e+01 1fjfT a.7.6.1 16338 1b47A 304 4.47e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17381,17775,40529 1spiA 358 4.54e+01 1frpA e.7.1.1 42939 2bfdA 400 4.58e+01 1jcrA 377 4.61e+01 a.118.6.1 66506 1lbd 282 4.63e+01 1lbd a.123.1.1 19279 1cz1A 394 4.66e+01 1cz1A c.1.8.3 28839 1crxA 322 4.68e+01 4crxA a.60.9.1,d.163.1.1 18097,42157 1sk7A 198 4.71e+01 a.132.1.2 105671 1fc3A 120 4.72e+01 1fc3A a.4.6.3 16237 1fohA 664 4.73e+01 1fohA c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 4crxA 322 4.83e+01 4crxA a.60.9.1,d.163.1.1 18095,42155 1t2bA 397 4.83e+01 1f02T 66 4.91e+01 1f02T j.67.1.1 46360 1k1gA 131 4.93e+01 d.51.1.1 68015 133l 130 4.93e+01 3lzt d.2.1.2 36524 1d8dA 377 4.94e+01 1ft1A a.118.6.1 19185 2itg 163 5.05e+01 1b9dA c.55.3.2 33669 134l 130 5.20e+01 3lzt d.2.1.2 36505 1m0wA 491 5.24e+01 c.30.1.4,d.142.1.6 78363,78364 1xo0A 324 5.27e+01 1bvqA 141 5.30e+01 1bvqA d.38.1.1 38542 3crxA 343 5.36e+01 4crxA a.60.9.1,d.163.1.1 18101,42161 1m2oB 190 5.38e+01 c.37.1.8 78485 1yr2A 741 5.53e+01 1qjaA 245 5.54e+01 1qjaA a.118.7.1 19204 1jr5A 90 5.56e+01 a.150.1.1 67113 1wpoA 256 5.57e+01 1lay b.57.1.1 27012 1wpoB 256 5.61e+01 1lay b.57.1.1 27013 1g5yA 238 5.75e+01 1lbd a.123.1.1 60294 1upqA 123 5.78e+01 1ne7A 289 5.79e+01 c.124.1.1 91833 1qvbA 481 5.79e+01 1qvbA c.1.8.4 28983 1b5vA 130 5.80e+01 3lzt d.2.1.2 36563 1xn9A 101 5.82e+01 1b5wA 130 5.84e+01 3lzt d.2.1.2 36557 1eqcA 394 5.85e+01 1cz1A c.1.8.3 28811 1emy 153 5.88e+01 1a6m a.1.1.2 15204 1jsdA 319 5.91e+01 b.19.1.2 63258 1d9tA 289 5.94e+01 1deaA 1top 162 5.97e+01 1ncx a.39.1.5 17223 1olsA 400 6.31e+01 c.36.1.11 93331 1nuuA 252 6.47e+01 c.26.1.3 86209 1hdoA 206 6.53e+01 1he2A c.2.1.2 60965 1nz6A 101 6.53e+01 a.2.3.1 86441 1kbuA 349 6.62e+01 a.60.9.1,d.163.1.1 72284,72285 1wxcA 281 6.63e+01 2f3yA 148 6.70e+01 1tn6A 382 6.72e+01 1g0uE 234 6.77e+01 d.153.1.4 41950 2cuaA 135 6.84e+01 2cuaA b.6.1.2 23039 1kdoA 227 6.92e+01 c.37.1.1 68478 1he2A 206 7.00e+01 1he2A c.2.1.2 60966 1q3jA 36 7.09e+01 g.3.4.2 95692 1mkp 144 7.10e+01 1vhrA c.45.1.1 32654 1nekA 588 7.13e+01 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1lo7A 141 7.21e+01 d.38.1.1 74144 1zrn 232 7.32e+01 1qq5A c.108.1.1 43323 1as6A 343 7.34e+01 1nif b.6.1.3,b.6.1.3 23090,23091 1zm0A 114 7.40e+01 1gx5A 536 7.42e+01 e.8.1.4 70682 1b7s 130 7.43e+01 3lzt d.2.1.2 36571 1c2pA 576 7.48e+01 1quvA e.8.1.4 43117 1ngr 85 7.55e+01 1ngr a.77.1.2 18422 1etpA 190 7.62e+01 1etpA a.3.1.4,a.3.1.4 15962,15963 1qlaA 656 7.75e+01 1qlaA a.7.3.1,c.3.1.4,d.168.1.1 16328,30427,42310 1nnxA 109 7.81e+01 b.40.10.1 92013 1m70A 190 8.11e+01 a.3.1.4,a.3.1.4 91200,91201 1b9dA 163 8.16e+01 1b9dA c.55.3.2 33649 1ncx 162 8.23e+01 1ncx a.39.1.5 17222 1jcqA 382 8.25e+01 a.118.6.1 66504 1pn0A 665 8.40e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1dkfA 233 8.51e+01 3erdA a.123.1.1 19280 1fjnA 39 8.52e+01 1fjnA g.3.7.3 44171 1np7A 489 8.56e+01 a.99.1.1,c.28.1.1 80677,80678 1fkmA 396 8.67e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1l5zA 155 8.79e+01 c.23.1.1 77722 1dk8A 147 8.79e+01 1agrE a.91.1.1 18548 2fm9A 215 8.82e+01 1abv 134 8.85e+01 1abv a.70.1.1 18317 1z0kB 69 8.91e+01 1xfxO 149 8.92e+01 1gesA 450 8.95e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1t0iA 191 8.96e+01 c.23.5.4 106209