Best Alignments for T0347

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1xb4A/T0347-1xb4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xb4A/T0347-1xb4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0179e+003.38e-05
1ne7A/T0347-1ne7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ne7A/T0347-1ne7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.0557e+008.00e-04 c.124.1.1
1zs9A/T0347-1zs9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zs9A/T0347-1zs9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.4396e+003.86e+00
1qg0A/T0347-1qg0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qg0A/T0347-1qg0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0800e+019.07e+00 1fnc b.43.4.2
c.25.1.1
1yj5A/T0347-1yj5A-t06-global-adpstyle1.a2m 1yj5A/T0347-1yj5A-t06-global-adpstyle1.al 1.6024e+011.39e-02
1exqA/T0347-1exqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1exqA/T0347-1exqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0829e+011.99e+02 1b9dA c.55.3.2
2ffhA/T0347-2ffhA-t06-local-adpstyle1.a2m 2ffhA/T0347-2ffhA-t06-local-adpstyle1.al 2.1042e+019.97e+00 1ng1 a.24.13.1
a.36.1.1
c.37.1.10
1t70A/T0347-1t70A-t06-local-adpstyle1.a2m 1t70A/T0347-1t70A-t06-local-adpstyle1.al 2.5251e+011.38e+01

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001