# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zs9A 261 1.06e-01 1r1hA 696 3.75e-01 d.92.1.4 104756 1yy7A 213 3.92e-01 1xb4A 202 4.75e-01 1ne7A 289 1.11e+00 c.124.1.1 91833 1u46A 291 1.43e+00 d.144.1.7 107656 1iwmA 186 2.01e+00 b.125.1.2 83758 1o6dA 163 2.11e+00 c.116.1.3 92567 1kjnA 157 2.22e+00 c.115.1.1 72614 1ignA 246 4.73e+00 1ignA a.4.1.6,a.4.1.6 16048,16049 2daqA 110 5.34e+00 1zq6A 359 5.36e+00 1wzzA 334 5.92e+00 1xhnA 184 6.36e+00 1s2oA 244 6.56e+00 1bx1A 314 6.97e+00 1fnc b.43.4.2,c.25.1.1 25629,31519 1yh1A 359 6.99e+00 1ckeA 227 7.27e+00 1ckeA c.37.1.1 31846 1xvxA 312 8.22e+00 1fnd 314 8.31e+00 1fnc b.43.4.2,c.25.1.1 25626,31516 2es7A 142 8.39e+00 1wh0A 134 8.40e+00 2carA 196 8.53e+00 6ldh 330 9.02e+00 3ldh c.2.1.5,d.162.1.1 30161,42128 1gqvA 135 1.04e+01 d.5.1.1 70376 1n3yA 198 1.04e+01 c.62.1.1 79976 1dl5A 317 1.05e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1f02T 66 1.15e+01 1f02T j.67.1.1 46360 1cby 259 1.15e+01 1cby d.103.1.1 40705 1lo7A 141 1.21e+01 d.38.1.1 74144 1vr0A 247 1.26e+01 2gz4A 207 1.33e+01 1m0wA 491 1.33e+01 c.30.1.4,d.142.1.6 78363,78364 2cmwA 310 1.45e+01 1lmzA 187 1.47e+01 a.96.1.4 74037 1jsf 130 1.58e+01 3lzt d.2.1.2 36410 1p9kA 79 1.69e+01 d.66.1.6 94392 1lm8V 160 1.72e+01 b.3.3.1 74035 2bivA 243 1.72e+01 1xyiA 66 1.79e+01 2erfA 209 1.88e+01 1kdoA 227 1.89e+01 c.37.1.1 68478 1cy5A 97 2.05e+01 1cy5A a.77.1.3 18430 1wxcA 281 2.05e+01 1rypL 212 2.07e+01 d.153.1.4 41880 1nnhA 294 2.08e+01 d.104.1.1 92005 1b4pA 217 2.12e+01 a.45.1.1,c.47.1.5 83158,83159 1o26A 232 2.17e+01 d.207.1.1 86566 2fa8A 105 2.18e+01 1fxlA 167 2.19e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1mbmA 198 2.24e+01 b.47.1.3 78916 1mvcA 240 2.27e+01 a.123.1.1 79499 2g3bA 208 2.30e+01 1rypF 233 2.31e+01 1rypF d.153.1.4 41937 1xkpB 124 2.35e+01 1cfzA 162 2.45e+01 1cfzA c.56.1.1 33754 2bf6A 449 2.48e+01 1ye8A 178 2.59e+01 2g8yA 385 2.63e+01 1exrA 148 2.70e+01 1cll a.39.1.5 17299 1gjnA 153 2.74e+01 a.1.1.2 70191 1jtdB 273 2.75e+01 b.69.5.2 67265 1yzxA 226 2.79e+01 1y0nA 78 2.82e+01 1dsxA 87 2.91e+01 1t1dA d.42.1.2 38644 1di6A 195 2.96e+01 1di6A c.57.1.1 33863 1hc7A 477 3.10e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1wp5A 323 3.14e+01 2frfA 153 3.15e+01 1xnfA 275 3.17e+01 1gkmA 509 3.22e+01 a.127.1.2 70228 1dk8A 147 3.48e+01 1agrE a.91.1.1 18548 1g3qA 237 3.61e+01 1hyqA c.37.1.10 60237 1dyoA 160 3.61e+01 1dyoA b.18.1.7 23771 1vr4A 103 3.62e+01 1tueA 212 3.67e+01 c.37.1.20 107323 1yzqA 170 3.69e+01 1g38A 393 3.71e+01 2admA c.66.1.27 60235 1yfbA 59 3.74e+01 1hr6A 475 3.77e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1g8kA 825 3.83e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1wpbA 172 4.05e+01 1oz2A 331 4.05e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 2c4jA 218 4.07e+01 1cojA 212 4.08e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1z0kB 69 4.16e+01 2aawA 222 4.20e+01 2gaeA 346 4.23e+01 1exqA 154 4.27e+01 1b9dA c.55.3.2 33646 1zpdA 568 4.27e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1nuuA 252 4.29e+01 c.26.1.3 86209 1q2zA 120 4.35e+01 a.118.19.1 95656 1io7A 368 4.46e+01 1f4tA a.104.1.1 18971 1jl5A 454 4.48e+01 c.10.2.6 66830 1nz6A 101 4.60e+01 a.2.3.1 86441 2gp5A 349 4.64e+01 1s1pA 331 4.72e+01 c.1.7.1 98350 1i19A 561 4.73e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1m70A 190 4.73e+01 a.3.1.4,a.3.1.4 91200,91201 1imjA 210 4.75e+01 c.69.1.23 71246 1x0rA 249 4.76e+01 1nnxA 109 4.79e+01 b.40.10.1 92013 1vqoI 162 4.79e+01 1lmq 129 4.82e+01 3lzt d.2.1.2 36588 2afbA 351 4.82e+01 1mai 131 4.84e+01 1mai b.55.1.1 26951 1s5uA 138 4.85e+01 d.38.1.1 98573 1brt 277 4.88e+01 1brt c.69.1.12 34699 1vyiA 112 4.92e+01 1wdpA 495 4.97e+01 1o58A 303 5.03e+01 c.79.1.1 92491 1fjgT 106 5.04e+01 1fjfT a.7.6.1 16338 2f9sA 151 5.05e+01 1pswA 348 5.09e+01 c.87.1.7 88287 3thiA 371 5.19e+01 2thiA c.94.1.1 35792 2fymA 431 5.20e+01 1i1qB 192 5.21e+01 1qdlB c.23.16.1 61544 1nvvS 481 5.22e+01 a.117.1.1 86279 1k6kA 143 5.22e+01 a.174.1.1 77274 1rkuA 206 5.26e+01 c.108.1.11 97627 1pv5A 264 5.27e+01 d.251.1.1 95150 1tig 94 5.32e+01 1tig d.68.1.1 39566 2abqA 306 5.57e+01 1j57A 143 5.58e+01 d.221.1.1 77079 1s1hD 179 5.68e+01 i.1.1.1 105157 1ug7A 128 5.69e+01 a.24.24.1 107824 1tzvA 142 5.83e+01 a.79.1.1 107526 2h1nA 567 5.84e+01 2ae0X 345 5.92e+01 1st9A 143 5.97e+01 c.47.1.10 98987 1w96A 554 6.04e+01 1ii7A 333 6.05e+01 1ii7A d.159.1.4 62415 1eokA 290 6.07e+01 1eokA c.1.8.5 28991 1oktA 211 6.07e+01 a.45.1.1,c.47.1.5 93272,93273 1inlA 296 6.15e+01 c.66.1.17 66220 1xd8A 289 6.18e+01 1yd0A 96 6.23e+01 2fm9A 215 6.35e+01 1fuiA 591 6.46e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 1v58A 241 6.50e+01 c.47.1.9,d.17.3.1 108371,108372 1px5A 349 6.52e+01 a.160.1.2,d.218.1.6 95277,95278 1oe4A 247 6.59e+01 c.18.1.3 86895 1zklA 353 6.65e+01 1zk8A 183 6.73e+01 1jvwA 167 6.75e+01 d.26.1.1 71907 1uwkA 557 6.77e+01 e.51.1.1 108065 2b7aA 293 6.78e+01 1zxfA 155 6.79e+01 1eceA 358 6.82e+01 1eceA c.1.8.3 28813 1gvnB 287 6.87e+01 c.37.1.21 76354 1z23A 163 6.95e+01 1h7cA 108 7.02e+01 a.7.5.1 70914 1vp7A 100 7.04e+01 1fjgK 129 7.22e+01 1fjfK c.55.4.1 33733 1nrjA 158 7.24e+01 d.110.4.4 86124 1ozjA 144 7.24e+01 d.164.1.1 93846 1uv7A 110 7.30e+01 d.67.4.1 100040 1zcbA 362 7.31e+01 1h0pA 182 7.33e+01 b.62.1.1 76450 1p4oA 322 7.36e+01 d.144.1.7 87775 2ah5A 210 7.38e+01 2fswA 107 7.41e+01 1yk3A 210 7.41e+01 1jboB 172 7.46e+01 a.1.1.3 84151 1hdoA 206 7.54e+01 1he2A c.2.1.2 60965 1regX 122 7.58e+01 1regX d.58.27.1 39406 1xd5A 112 7.63e+01 2cc6A 68 7.66e+01 1qysA 106 7.70e+01 k.41.1.1 96603 2etjA 250 7.75e+01 1w98B 283 7.76e+01 1e8gA 560 7.86e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1nzjA 298 7.90e+01 c.26.1.1 92377 1a6m 151 7.91e+01 1a6m a.1.1.2 15018 2a2rA 210 7.94e+01 1vplA 256 7.96e+01 1vj1A 363 8.00e+01 b.35.1.2,c.2.1.1 100794,100795 1ynlH 219 8.12e+01 1wucA 250 8.20e+01 2f3yA 148 8.21e+01 1dmhA 311 8.21e+01 1dmhA b.3.6.1 22633 1np7A 489 8.22e+01 a.99.1.1,c.28.1.1 80677,80678 2afaA 425 8.48e+01 1wkqA 164 8.50e+01 c.97.1.2 109393 1h65A 270 8.55e+01 c.37.1.8 65640 1fjnA 39 8.56e+01 1fjnA g.3.7.3 44171 1z08A 170 8.76e+01 1c8cA 64 8.79e+01 1azpA b.34.13.1 59084 1dp4A 435 8.80e+01 1dp4A c.93.1.1 35710 1h3oB 76 8.90e+01 a.22.1.3 76645 1m4lA 307 8.92e+01 c.56.5.1 78604