# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xb4A 202 4.03e-01 1ne7A 289 1.92e+00 c.124.1.1 91833 1zs9A 261 2.60e+00 1zz1A 369 4.32e+00 1yyqA 374 4.61e+00 1exqA 154 5.04e+00 1b9dA c.55.3.2 33646 1sk7A 198 8.19e+00 a.132.1.2 105671 2bivA 243 1.05e+01 1z0kB 69 1.19e+01 1yfbA 59 1.30e+01 1wy9A 147 1.31e+01 1yz4A 160 1.40e+01 1inlA 296 1.43e+01 c.66.1.17 66220 2bneA 241 1.48e+01 1oz2A 331 1.49e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1eceA 358 1.50e+01 1eceA c.1.8.3 28813 1rsgA 516 1.53e+01 1dqzA 280 1.53e+01 1dqyA c.69.1.3 34638 1gqvA 135 1.56e+01 d.5.1.1 70376 1zrn 232 1.60e+01 1qq5A c.108.1.1 43323 2gz4A 207 1.64e+01 1o20A 427 1.73e+01 c.82.1.1 86556 1n3yA 198 1.90e+01 c.62.1.1 79976 1exrA 148 1.99e+01 1cll a.39.1.5 17299 1zpdA 568 2.15e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1anf 370 2.19e+01 4mbp c.94.1.1 35776 2ew8A 249 2.20e+01 2eutA 294 2.30e+01 1nvvS 481 2.33e+01 a.117.1.1 86279 1ltqA 301 2.34e+01 c.108.1.9,c.37.1.1 78208,78209 2bn5A 33 2.38e+01 2cmwA 310 2.40e+01 1lmzA 187 2.45e+01 a.96.1.4 74037 1x0rA 249 2.47e+01 1cydA 244 2.47e+01 1cydA c.2.1.2 29825 1oe4A 247 2.51e+01 c.18.1.3 86895 1f0nA 285 2.60e+01 1dqyA c.69.1.3 34636 2fhfA 1083 2.61e+01 1eokA 290 2.73e+01 1eokA c.1.8.5 28991 1ly1A 181 2.74e+01 c.37.1.1 74334 1b4pA 217 2.86e+01 a.45.1.1,c.47.1.5 83158,83159 1oc2A 348 2.87e+01 c.2.1.2 92765 1a6m 151 2.87e+01 1a6m a.1.1.2 15018 1iwmA 186 2.88e+01 b.125.1.2 83758 1r1hA 696 2.89e+01 d.92.1.4 104756 2f3yA 148 2.93e+01 1ash 150 2.96e+01 1ash a.1.1.2 15622 1b0nA 111 3.30e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1ylkA 172 3.33e+01 1xw8A 252 3.34e+01 2b0tA 738 3.34e+01 1gjnA 153 3.44e+01 a.1.1.2 70191 1avsA 90 3.51e+01 1cll a.39.1.5 17226 1e7wA 291 3.57e+01 c.2.1.2 59373 2es7A 142 3.63e+01 1za0A 275 3.64e+01 1psrA 100 3.72e+01 1psrA a.39.1.2 17180 2erfA 209 3.72e+01 1vr0A 247 3.82e+01 1mvcA 240 3.91e+01 a.123.1.1 79499 1w85A 368 3.93e+01 1rxqA 178 3.97e+01 a.213.1.1 105118 1j8bA 112 4.04e+01 d.222.1.1 77101 2a6sA 84 4.09e+01 1fr2B 134 4.24e+01 d.4.1.1 83257 1wtaA 275 4.26e+01 2frfA 153 4.36e+01 1wrjA 156 4.41e+01 1wkqA 164 4.41e+01 c.97.1.2 109393 1l5wA 796 4.56e+01 c.87.1.4 73605 1zklA 353 4.56e+01 1h7eA 245 4.68e+01 c.68.1.13 60717 1s9uA 207 4.83e+01 a.184.1.1 105390 1i0dA 332 5.01e+01 1pscA c.1.9.3 61487 1rypF 233 5.06e+01 1rypF d.153.1.4 41937 1v58A 241 5.19e+01 c.47.1.9,d.17.3.1 108371,108372 2bbrA 195 5.23e+01 1njrA 284 5.35e+01 c.50.1.2 103858 2a1fA 247 5.41e+01 1tfzA 424 5.56e+01 d.32.1.3,d.32.1.3 106886,106887 1wzlA 585 5.66e+01 1yqgA 263 5.68e+01 2a65A 519 5.71e+01 1geqA 248 5.81e+01 2tysA c.1.2.4 28589 1dp4A 435 5.83e+01 1dp4A c.93.1.1 35710 1mlwA 301 5.88e+01 d.178.1.1 79289 1px5A 349 5.89e+01 a.160.1.2,d.218.1.6 95277,95278 1rd5A 262 5.91e+01 1tzyC 136 5.91e+01 a.22.1.1 107532 1xzoA 174 5.95e+01 1uvjA 664 5.95e+01 e.8.1.6 100045 2btdA 210 6.05e+01 2bcqA 335 6.05e+01 1r7aA 504 6.09e+01 b.71.1.1,c.1.8.1 97192,97193 1pylA 97 6.16e+01 d.1.1.2 104391 1x3aA 100 6.19e+01 1vyrA 364 6.24e+01 c.1.4.1 108906 1k9uA 78 6.27e+01 a.39.1.10 84348 1q7zA 566 6.34e+01 c.1.21.2,c.1.26.1 96090,96091 1bea 127 6.39e+01 1bea a.52.1.2 17826 1s2oA 244 6.45e+01 1k6iA 352 6.45e+01 c.2.1.2 68223 2gviA 204 6.45e+01 1spxA 278 6.47e+01 c.2.1.2 98958 1vhuA 211 6.56e+01 c.50.1.2 100703 1z6oM 191 6.63e+01 1mw9X 592 6.66e+01 e.10.1.1 91480 3htsB 102 6.87e+01 2hts a.4.5.22 16175 1ois 223 6.87e+01 1a36A e.15.1.1 43267 1ytvA 366 6.89e+01 1h5rA 293 6.96e+01 c.68.1.6 65623 1bx1A 314 6.98e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1pmzA 86 6.98e+01 a.39.1.10 104195 1lm8C 96 6.98e+01 d.42.1.1 74034 1unlD 208 6.99e+01 1aihA 170 7.03e+01 1aihA d.163.1.1 42149 1h99A 224 7.06e+01 a.142.1.1,a.142.1.1 60814,60815 2c4jA 218 7.14e+01 2gs5A 198 7.24e+01 1jpzA 473 7.34e+01 a.104.1.1 67069 1yewC 289 7.60e+01 1y0nA 78 7.66e+01 1g4wR 383 7.88e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 2a6hE 99 7.91e+01 1byi 224 7.95e+01 1byi c.37.1.10 32199 2dfkA 402 8.01e+01 1qh8A 478 8.11e+01 1qguA c.92.2.3 35633 3thiA 371 8.12e+01 2thiA c.94.1.1 35792 1ug7A 128 8.25e+01 a.24.24.1 107824 1mzgA 146 8.25e+01 d.224.1.1 79696 1x38A 602 8.28e+01 2ch0A 133 8.30e+01 2fnjC 96 8.31e+01 2c6qA 351 8.33e+01 1u0kA 288 8.44e+01 d.21.1.2,d.21.1.2 107547,107548 1pii 452 8.45e+01 1pii c.1.2.4,c.1.2.4 28559,28563 1fcyA 236 8.45e+01 2lbd a.123.1.1 19282 2aawA 222 8.49e+01 1qlwA 328 8.52e+01 1qlwA c.69.1.15 34722 1jflA 228 8.53e+01 c.78.2.1,c.78.2.1 71656,71657 1atzA 189 8.66e+01 1atzA c.62.1.1 34132 2fnaA 357 8.71e+01 1p9kA 79 8.74e+01 d.66.1.6 94392 1r3jC 124 8.77e+01 f.14.1.1 96932 1nw1A 429 8.84e+01 d.144.1.8 86286 1sqnA 261 8.84e+01 a.123.1.1 105944 1xvxA 312 8.85e+01 1jmxA 494 8.96e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1tp9A 162 8.99e+01