# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xb4A 202 1.62e-01 1exqA 154 1.42e+00 1b9dA c.55.3.2 33646 1xvxA 312 1.72e+00 1wkaA 147 2.01e+00 1zz1A 369 2.28e+00 2cvxA 888 2.65e+00 2cnqA 306 2.81e+00 1obdA 306 3.02e+00 d.143.1.1 86767 1w85A 368 3.23e+00 1y81A 138 3.95e+00 1y0nA 78 4.07e+00 1oe4A 247 4.14e+00 c.18.1.3 86895 2bivA 243 4.31e+00 1oz2A 331 4.34e+00 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1jsf 130 4.51e+00 3lzt d.2.1.2 36410 2fdbM 164 4.52e+00 1e7wA 291 4.76e+00 c.2.1.2 59373 1a6m 151 4.83e+00 1a6m a.1.1.2 15018 1yyqA 374 4.95e+00 1zs9A 261 5.08e+00 1wtaA 275 5.16e+00 1pv5A 264 5.26e+00 d.251.1.1 95150 1ne7A 289 5.57e+00 c.124.1.1 91833 1cydA 244 5.67e+00 1cydA c.2.1.2 29825 1o20A 427 6.15e+00 c.82.1.1 86556 1uc7A 125 6.15e+00 c.47.1.1 99163 2fwhA 134 6.45e+00 1zpdA 568 6.83e+00 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1gqvA 135 7.05e+00 d.5.1.1 70376 1yewC 289 7.90e+00 1ro2A 216 8.08e+00 d.264.1.2 97665 2b49A 287 8.83e+00 1vyrA 364 9.09e+00 c.1.4.1 108906 1ro0A 216 9.47e+00 d.264.1.2 97664 2erfA 209 9.48e+00 1z15A 344 9.51e+00 2bneA 241 9.61e+00 1h5uA 842 9.96e+00 1a8i c.87.1.4 60655 1eceA 358 1.04e+01 1eceA c.1.8.3 28813 1za0A 275 1.07e+01 2ew8A 249 1.10e+01 1s1pA 331 1.13e+01 c.1.7.1 98350 1tueA 212 1.14e+01 c.37.1.20 107323 2ch0A 133 1.16e+01 2bn5A 33 1.17e+01 1tfzA 424 1.25e+01 d.32.1.3,d.32.1.3 106886,106887 1zrn 232 1.28e+01 1qq5A c.108.1.1 43323 1npiA 61 1.28e+01 g.3.7.1 80685 1gjnA 153 1.29e+01 a.1.1.2 70191 1unlD 208 1.32e+01 1iybA 208 1.33e+01 d.124.1.1 90720 1ylkA 172 1.33e+01 2a8yA 270 1.37e+01 2fhfA 1083 1.39e+01 1ltqA 301 1.41e+01 c.108.1.9,c.37.1.1 78208,78209 2gz4A 207 1.42e+01 2bbrA 195 1.43e+01 2frfA 153 1.51e+01 1s2oA 244 1.52e+01 1z0kB 69 1.54e+01 1sv0C 82 1.57e+01 a.60.1.1 106037 1xw8A 252 1.59e+01 1tc5A 194 1.67e+01 c.110.1.1 106752 1ff9A 450 1.68e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 2a65A 519 1.70e+01 1ly1A 181 1.72e+01 c.37.1.1 74334 2f9zC 159 1.75e+01 1i60A 278 1.75e+01 c.1.15.4 71118 1vflA 356 1.78e+01 1b4pA 217 1.81e+01 a.45.1.1,c.47.1.5 83158,83159 2gsfA 373 1.87e+01 1sauA 115 1.92e+01 1q1uA 144 1.92e+01 b.42.1.1 95608 1k6iA 352 1.93e+01 c.2.1.2 68223 2a1fA 247 1.95e+01 1aua 296 2.01e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1w96A 554 2.05e+01 1wrjA 156 2.06e+01 1np7A 489 2.07e+01 a.99.1.1,c.28.1.1 80677,80678 1eokA 290 2.09e+01 1eokA c.1.8.5 28991 1zvtA 256 2.10e+01 1f0nA 285 2.14e+01 1dqyA c.69.1.3 34636 2gs5A 198 2.22e+01 2b0tA 738 2.26e+01 1pii 452 2.29e+01 1pii c.1.2.4,c.1.2.4 28559,28563 2abqA 306 2.30e+01 1mngA 203 2.30e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1xzoA 174 2.30e+01 1uvjA 664 2.36e+01 e.8.1.6 100045 2dg5A 366 2.39e+01 1anf 370 2.40e+01 4mbp c.94.1.1 35776 1r0pA 312 2.40e+01 d.144.1.7 96734 1wkqA 164 2.40e+01 c.97.1.2 109393 2gviA 204 2.43e+01 16pk 415 2.43e+01 16pk c.86.1.1 35454 1j99A 293 2.47e+01 c.37.1.5 71618 1bea 127 2.50e+01 1bea a.52.1.2 17826 1p3dA 475 2.51e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1nzjA 298 2.57e+01 c.26.1.1 92377 1orsC 132 2.57e+01 f.14.1.1 87353 2cbuA 468 2.60e+01 1htrP 43 2.61e+01 1htrP b.50.1.2 26852 1lngA 87 2.65e+01 d.201.1.1 74045 1xgkA 352 2.65e+01 1hdoA 206 2.65e+01 1he2A c.2.1.2 60965 1x7yA 400 2.70e+01 1h1yA 228 2.74e+01 c.1.2.2 76506 1dqzA 280 2.76e+01 1dqyA c.69.1.3 34638 1apyA 162 2.77e+01 1apyA d.153.1.5 42004 1yfbA 59 2.78e+01 1dptA 117 2.79e+01 1dptA d.80.1.3 39862 1zv9A 172 2.80e+01 1augA 215 2.88e+01 1a2zA c.56.4.1 33798 1m70A 190 2.89e+01 a.3.1.4,a.3.1.4 91200,91201 1r3jC 124 2.97e+01 f.14.1.1 96932 2g09A 297 3.03e+01 2g0uA 92 3.05e+01 2ftwA 521 3.07e+01 1yj7A 171 3.09e+01 1m65A 245 3.11e+01 c.6.3.1 84847 1ituA 369 3.11e+01 c.1.9.7 71423 1ht6A 405 3.13e+01 b.71.1.1,c.1.8.1 83629,83630 2es7A 142 3.14e+01 1ag6 99 3.19e+01 1plc b.6.1.1 22857 1gnlA 544 3.29e+01 e.26.1.1 70287 2bfdA 400 3.30e+01 2dfkA 402 3.31e+01 1ucnA 152 3.32e+01 d.58.6.1 99183 1q7zA 566 3.32e+01 c.1.21.2,c.1.26.1 96090,96091 1rd5A 262 3.36e+01 1wzcA 249 3.38e+01 1ob8A 135 3.38e+01 1fmcA 255 3.45e+01 1cydA c.2.1.2 29856 1wdpA 495 3.47e+01 2gh1A 301 3.50e+01 3htsB 102 3.51e+01 2hts a.4.5.22 16175 1ucdA 190 3.55e+01 d.124.1.1 107767 1nuuA 252 3.58e+01 c.26.1.3 86209 1ug7A 128 3.60e+01 a.24.24.1 107824 1qi9A 556 3.66e+01 1qhbA a.111.1.2 19053 2bcqA 335 3.66e+01 1vlmA 219 3.67e+01 c.66.1.41 108836 1nvvS 481 3.73e+01 a.117.1.1 86279 1l4dB 122 3.74e+01 d.15.5.1 77684 1bif 469 3.75e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1wp5A 323 3.75e+01 1qznA 173 3.78e+01 b.2.2.2 104669 1b0nA 111 3.81e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1ijtA 128 3.81e+01 1bfg b.42.1.1 62510 1xkpB 124 3.89e+01 2plt 98 3.90e+01 1plc b.6.1.1 22862 2cmwA 310 3.92e+01 1seiA 130 3.95e+01 1seiA d.140.1.1 41463 1lwdA 413 4.03e+01 c.77.1.1 78265 1wzlA 585 4.03e+01 1un7A 400 4.07e+01 b.92.1.5,c.1.9.10 99657,99658 1v3vA 333 4.08e+01 b.35.1.2,c.2.1.1 108345,108346 2a6sA 84 4.10e+01 2fiyA 309 4.26e+01 1epxA 370 4.26e+01 1fbaA c.1.10.1 29150 1ignA 246 4.31e+01 1ignA a.4.1.6,a.4.1.6 16048,16049 2bs3A 656 4.33e+01 1ihkA 174 4.34e+01 1bfg b.42.1.1 62384 1nnhA 294 4.37e+01 d.104.1.1 92005 1h0pA 182 4.39e+01 b.62.1.1 76450 1fobA 334 4.40e+01 c.1.8.3 83255 1lmzA 187 4.40e+01 a.96.1.4 74037 1vr5A 547 4.48e+01 1sk7A 198 4.52e+01 a.132.1.2 105671 1iwmA 186 4.57e+01 b.125.1.2 83758 2bjbA 462 4.58e+01 1eiwA 111 4.69e+01 1eiwA c.23.3.1 31130 1j96A 323 4.69e+01 c.1.7.1 71616 1ustA 93 4.71e+01 a.4.5.13 99884 1st9A 143 4.73e+01 c.47.1.10 98987 1yc5A 246 4.75e+01 1yhvA 297 4.75e+01 2an3A 289 4.78e+01 1xrtA 467 4.79e+01 1u0kA 288 4.83e+01 d.21.1.2,d.21.1.2 107547,107548 1whzA 70 4.83e+01 1h6fA 193 4.91e+01 b.2.5.4 70901 1bzkA 43 4.91e+01 1bzkA j.35.1.1 46250 1mlwA 301 4.92e+01 d.178.1.1 79289 2bg1A 494 4.92e+01 1oc2A 348 4.94e+01 c.2.1.2 92765 1t0fC 54 4.95e+01 1us0A 316 4.95e+01 c.1.7.1 99850 2afbA 351 4.95e+01 1zd3A 555 5.01e+01 2d2eA 250 5.05e+01 2aa1B 146 5.07e+01 1r5lA 262 5.08e+01 a.5.3.1,c.13.1.1 97099,97100 2f6eA 127 5.13e+01 1ur4A 399 5.14e+01 1rxqA 178 5.16e+01 a.213.1.1 105118 6rxn 46 5.16e+01 1rb9 g.41.5.1 45222 2c4jA 218 5.16e+01 1jpzA 473 5.17e+01 a.104.1.1 67069 1jmxA 494 5.29e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1w7lA 422 5.32e+01 c.67.1.1 109226 1y4tA 322 5.33e+01 2fj6A 82 5.38e+01 1mkmA 249 5.40e+01 a.4.5.33,d.110.2.2 79242,79243 1ye8A 178 5.47e+01 1px5A 349 5.56e+01 a.160.1.2,d.218.1.6 95277,95278 2d13A 227 5.61e+01 1woyA 500 5.61e+01 1qrvA 73 5.66e+01 1cktA a.21.1.1 16425 2btdA 210 5.67e+01 1tn6A 382 5.68e+01 1bf2 750 5.68e+01 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1uf2A 1019 5.68e+01 e.28.1.2 99289 1kb0A 677 5.69e+01 a.3.1.6,b.70.1.1 68378,68379 1bn7A 294 5.71e+01 1bn6A c.69.1.8 34677 1pylA 97 5.75e+01 d.1.1.2 104391 1v58A 241 5.75e+01 c.47.1.9,d.17.3.1 108371,108372 1x6mA 196 5.78e+01 1n7kA 234 5.79e+01 c.1.10.1 85374 2f96A 224 5.82e+01 2d5cA 263 5.85e+01 1uf5A 303 5.88e+01 d.160.1.2 107808 1zklA 353 5.89e+01 1gmeA 151 5.94e+01 b.15.1.1 65305 1l5wA 796 5.96e+01 c.87.1.4 73605 1o2dA 371 5.97e+01 e.22.1.2 86591 1ihgA 370 5.97e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1u5tA 233 5.98e+01 a.4.5.54,a.4.5.54 107684,107685 1zxfA 155 5.98e+01 2h1rA 299 5.98e+01 1iro 54 6.02e+01 1rb9 g.41.5.1 45223 1p9kA 79 6.02e+01 d.66.1.6 94392 1oshA 232 6.06e+01 a.123.1.1 93496 1k8qA 377 6.07e+01 c.69.1.6 72177 1jdlA 121 6.13e+01 a.3.1.1 66557 1x9mA 698 6.17e+01 1zu4A 320 6.18e+01 1rypJ 204 6.23e+01 d.153.1.4 41878 1usyA 275 6.23e+01 1yw5A 177 6.23e+01 1j8bA 112 6.26e+01 d.222.1.1 77101 2c0rA 362 6.28e+01 1wzzA 334 6.32e+01 1gqzA 274 6.33e+01 d.21.1.1,d.21.1.1 83311,83312 1regX 122 6.42e+01 1regX d.58.27.1 39406 2gl5A 410 6.44e+01 1yk4A 52 6.50e+01 1v25A 541 6.50e+01 e.23.1.1 108275 1z5bA 469 6.50e+01 1vcvA 226 6.50e+01 1jflA 228 6.57e+01 c.78.2.1,c.78.2.1 71656,71657 2fflA 756 6.60e+01 1zelA 298 6.62e+01 1urjA 1136 6.65e+01 1x3aA 100 6.65e+01 3thiA 371 6.67e+01 2thiA c.94.1.1 35792 1xu9A 286 6.69e+01 1x0rA 249 6.69e+01 1brfA 53 6.71e+01 1rb9 g.41.5.1 45236 1ash 150 6.77e+01 1ash a.1.1.2 15622 1w68A 390 6.84e+01 a.25.1.2 109216 1cs1A 386 6.84e+01 1ibjA c.67.1.3 34399 1dvpA 220 6.85e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 1psrA 100 6.87e+01 1psrA a.39.1.2 17180 1qkkA 155 6.88e+01 1dbwA c.23.1.1 31104 1fjgP 88 6.99e+01 1emwA d.27.1.1 38444 1gveA 327 7.01e+01 c.1.7.1 70597 1alu 186 7.01e+01 1alu a.26.1.1 16826 2f9sA 151 7.08e+01 1unkA 87 7.12e+01 1cei a.28.2.1 16935 2a2pA 129 7.16e+01 2ahqA 76 7.17e+01 1dk8A 147 7.22e+01 1agrE a.91.1.1 18548 2c1iA 431 7.31e+01 1w2lA 99 7.33e+01 1dcs 311 7.35e+01 1dcs b.82.2.1 28124 1r1hA 696 7.35e+01 d.92.1.4 104756 1yseA 141 7.45e+01 1zm0A 114 7.49e+01 1vemA 516 7.63e+01 1s9uA 207 7.64e+01 a.184.1.1 105390 1whnA 128 7.65e+01 1ktbA 405 7.72e+01 b.71.1.1,c.1.8.1 72960,72961 2carA 196 7.75e+01 1yqgA 263 7.78e+01 1dp4A 435 7.84e+01 1dp4A c.93.1.1 35710 1rh5A 436 7.90e+01 f.41.1.1 97464 1flmA 122 7.90e+01 1axj b.45.1.1 25747 1hfeL 421 7.92e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1fr2B 134 7.93e+01 d.4.1.1 83257 1vcc 77 7.98e+01 1vcc d.121.1.1 41092 1p4kA 295 8.02e+01 d.153.1.5 87772 1ui5A 215 8.03e+01 a.4.1.9,a.121.1.1 107856,107857 1ja9A 274 8.06e+01 c.2.1.2 62817 1rf6A 427 8.08e+01 d.68.2.2 97366 1fc4A 401 8.09e+01 1bs0A c.67.1.4 59760 1uasA 362 8.10e+01 b.71.1.1,c.1.8.1 88388,88389 1x54A 434 8.14e+01 1qipA 183 8.17e+01 1qipA d.32.1.1 38470 1lq9A 112 8.23e+01 d.58.4.3 78129 1g4wR 383 8.23e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1gegA 256 8.29e+01 1ybvA c.2.1.2 29888 1z1lA 345 8.32e+01 1chuA 540 8.37e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1wnyA 186 8.45e+01 1a2zA 220 8.45e+01 1a2zA c.56.4.1 33794 1t0iA 191 8.48e+01 c.23.5.4 106209 2cw6A 298 8.48e+01 1dozA 309 8.52e+01 1ak1 c.92.1.1 35592 2f6hX 419 8.52e+01 1aihA 170 8.53e+01 1aihA d.163.1.1 42149 2gkeA 274 8.54e+01 1m32A 366 8.59e+01 c.67.1.3 78508 2fnaA 357 8.59e+01 1mxrA 375 8.62e+01 a.25.1.2 85197 1wy9A 147 8.73e+01 2dd8S 202 8.75e+01 1mw9X 592 8.75e+01 e.10.1.1 91480 1jeyB 565 8.75e+01 1jeqB b.131.1.2,c.62.1.4 90372,90373 2h1tA 188 8.76e+01 1iugA 352 8.77e+01 c.67.1.3 90699 2aaxA 275 8.81e+01 1orvA 728 8.83e+01 b.70.3.1,c.69.1.24 87354,87355 1ww9A 392 8.84e+01 1u55A 188 8.85e+01 d.278.1.1 107677 1wi9A 72 8.88e+01 2evaA 307 8.88e+01 2gs8A 317 8.88e+01 1wn5A 130 8.95e+01 2ckiA 262 8.97e+01