# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zs9A 261 3.82e-01 1xb4A 202 7.36e-01 1r1hA 696 1.37e+00 d.92.1.4 104756 1u46A 291 1.44e+00 d.144.1.7 107656 1o6dA 163 2.17e+00 c.116.1.3 92567 1ignA 246 2.85e+00 1ignA a.4.1.6,a.4.1.6 16048,16049 1xhnA 184 3.16e+00 1ne7A 289 3.43e+00 c.124.1.1 91833 1lmzA 187 3.81e+00 a.96.1.4 74037 1b4pA 217 5.46e+00 a.45.1.1,c.47.1.5 83158,83159 1yy7A 213 6.67e+00 2carA 196 7.09e+00 1vr0A 247 8.24e+00 1m0wA 491 8.52e+00 c.30.1.4,d.142.1.6 78363,78364 1kjnA 157 9.58e+00 c.115.1.1 72614 1wh0A 134 9.91e+00 1exqA 154 9.98e+00 1b9dA c.55.3.2 33646 1cby 259 1.08e+01 1cby d.103.1.1 40705 1gjnA 153 1.11e+01 a.1.1.2 70191 1nrjA 158 1.21e+01 d.110.4.4 86124 1iwmA 186 1.29e+01 b.125.1.2 83758 1mveA 243 1.31e+01 b.29.1.2 85140 2daqA 110 1.38e+01 2fa8A 105 1.54e+01 1hh1A 143 1.64e+01 1gefA c.52.1.18 61036 1n1jB 97 1.64e+01 a.22.1.3 79814 1dbxA 158 1.66e+01 1dbuA d.116.1.1 40928 6ldh 330 1.67e+01 3ldh c.2.1.5,d.162.1.1 30161,42128 1wpbA 172 1.67e+01 2bf6A 449 1.69e+01 1xnfA 275 1.74e+01 1wzzA 334 1.83e+01 1ckeA 227 1.94e+01 1ckeA c.37.1.1 31846 2frfA 153 1.99e+01 2f3yA 148 2.02e+01 3ygsP 97 2.14e+01 3ygsP a.77.1.3 18435 2fyxA 143 2.49e+01 1a6m 151 2.61e+01 1a6m a.1.1.2 15018 1o26A 232 2.66e+01 d.207.1.1 86566 1z0kB 69 2.68e+01 1irzA 64 2.74e+01 a.4.1.11 76772 2c4jA 218 2.75e+01 1bm9A 122 2.80e+01 1bm9A a.4.5.7 16116 1c52 131 2.81e+01 1c52 a.3.1.1 15810 1f74A 293 3.03e+01 1nal3 c.1.10.1 29079 1mbmA 198 3.04e+01 b.47.1.3 78916 1lo7A 141 3.06e+01 d.38.1.1 74144 1rypF 233 3.07e+01 1rypF d.153.1.4 41937 1zrn 232 3.11e+01 1qq5A c.108.1.1 43323 1z91A 147 3.14e+01 1lm8V 160 3.14e+01 b.3.3.1 74035 2a6aA 218 3.23e+01 2es7A 142 3.24e+01 1exrA 148 3.27e+01 1cll a.39.1.5 17299 1dmhA 311 3.30e+01 1dmhA b.3.6.1 22633 2fm9A 215 3.33e+01 1z3xA 238 3.33e+01 1q0gA 117 3.50e+01 a.24.22.1 104428 1xyiA 66 3.55e+01 2g8yA 385 3.61e+01 1vecA 206 3.62e+01 c.37.1.19 100575 1t2bA 397 3.65e+01 1kdoA 227 3.71e+01 c.37.1.1 68478 2g0cA 76 3.95e+01 1nnxA 109 4.00e+01 b.40.10.1 92013 1sx7A 164 4.15e+01 1yh1A 359 4.18e+01 1f02T 66 4.26e+01 1f02T j.67.1.1 46360 1gwiA 411 4.27e+01 a.104.1.1 76364 1n12A 138 4.38e+01 b.2.3.2 79779 1wucA 250 4.41e+01 1vr4A 103 4.42e+01 1dk8A 147 4.44e+01 1agrE a.91.1.1 18548 1w98B 283 4.44e+01 1nzjA 298 4.50e+01 c.26.1.1 92377 2cmwA 310 4.52e+01 1io7A 368 4.58e+01 1f4tA a.104.1.1 18971 1t3qB 788 4.88e+01 d.41.1.1,d.133.1.1 106369,106370 2dd8S 202 4.91e+01 1winA 143 4.95e+01 1bx1A 314 5.01e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1mvcA 240 5.08e+01 a.123.1.1 79499 1wxcA 281 5.08e+01 1pswA 348 5.14e+01 c.87.1.7 88287 1txkA 498 5.14e+01 b.1.18.2,b.30.5.9 107425,107426 2b0tA 738 5.22e+01 1tn6A 382 5.24e+01 1vlaA 150 5.29e+01 d.227.1.2 108735 1cy5A 97 5.30e+01 1cy5A a.77.1.3 18430 1xweA 151 5.32e+01 1qh8A 478 5.32e+01 1qguA c.92.2.3 35633 1zq6A 359 5.34e+01 1fjgT 106 5.39e+01 1fjfT a.7.6.1 16338 1n0xH 230 5.42e+01 b.1.1.1,b.1.1.2 91528,91529 3seb 238 5.45e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1o2dA 371 5.52e+01 e.22.1.2 86591 1yzqA 170 5.55e+01 1jsdA 319 5.72e+01 b.19.1.2 63258 1g8aA 227 5.93e+01 c.66.1.3 90506 2g3bA 208 5.95e+01 1f28A 297 5.96e+01 1bkpA d.117.1.1 59608 1j8bA 112 6.04e+01 d.222.1.1 77101 1dl5A 317 6.06e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1ois 223 6.09e+01 1a36A e.15.1.1 43267 1elvA 333 6.19e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1tueA 212 6.29e+01 c.37.1.20 107323 1dyoA 160 6.50e+01 1dyoA b.18.1.7 23771 1l5aA 436 6.58e+01 c.43.1.2,c.43.1.2 75923,75924 1wpoA 256 6.61e+01 1lay b.57.1.1 27012 1he7A 126 6.66e+01 1wwcA b.1.1.4 60970 1krs 120 6.68e+01 1krs b.40.4.1 25256 1rwhA 757 6.74e+01 a.102.3.2,b.24.1.1,b.30.5.2 97984,97985,97986 1fnd 314 6.77e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1jyoA 130 6.84e+01 d.198.1.1 67483 1whzA 70 6.86e+01 1k87A 669 7.10e+01 a.176.1.1,c.1.23.2 77286,77287 1n5uA 585 7.26e+01 a.126.1.1,a.126.1.1,a.126.1.1 85339,85340,85341 1z23A 163 7.41e+01 1pn0A 665 7.45e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1m7sA 484 7.49e+01 e.5.1.1 74574 1oq9A 363 7.51e+01 a.25.1.2 87257 1m4lA 307 7.54e+01 c.56.5.1 78604 1w9pA 433 7.75e+01 2bjfA 329 7.84e+01 1fkmA 396 7.89e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1t95A 240 7.93e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1ypvA 313 8.01e+01 2erfA 209 8.01e+01 1k6kA 143 8.04e+01 a.174.1.1 77274 1ymtA 246 8.06e+01 1ks9A 291 8.22e+01 a.100.1.7,c.2.1.6 68857,68858 1dp4A 435 8.34e+01 1dp4A c.93.1.1 35710 1dsxA 87 8.35e+01 1t1dA d.42.1.2 38644 1o1yA 239 8.39e+01 c.23.16.1 86554 1j57A 143 8.47e+01 d.221.1.1 77079 1jvwA 167 8.48e+01 d.26.1.1 71907 1rypL 212 8.57e+01 d.153.1.4 41880 1xkpB 124 8.58e+01 1hr6A 475 8.67e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 2b5lC 222 8.71e+01 1n3yA 198 8.72e+01 c.62.1.1 79976 1yfbA 59 8.86e+01 1np7A 489 8.87e+01 a.99.1.1,c.28.1.1 80677,80678 1x3aA 100 8.90e+01