Best Alignments for T0347

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1xb4A/T0347-1xb4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xb4A/T0347-1xb4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5573e+001.33e-04
1u5tC/T0347-1u5tC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u5tC/T0347-1u5tC-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.5291e+001.61e-02 a.4.5.54
a.4.5.54
1qg0A/T0347-1qg0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qg0A/T0347-1qg0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1900e+011.18e+01 1fnc b.43.4.2
c.25.1.1
1ne7A/T0347-1ne7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ne7A/T0347-1ne7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2903e+011.81e-03 c.124.1.1
1iuhA/T0347-1iuhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1iuhA/T0347-1iuhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3530e+011.46e-04 d.61.1.2
1zs9A/T0347-1zs9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zs9A/T0347-1zs9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.8389e+015.37e+01
2ffhA/T0347-2ffhA-t04-local-adpstyle1.a2m 2ffhA/T0347-2ffhA-t04-local-adpstyle1.al 1.9961e+011.19e+01 1ng1 a.24.13.1
a.36.1.1
c.37.1.10
1yj5A/T0347-1yj5A-t04-global-adpstyle1.a2m 1yj5A/T0347-1yj5A-t04-global-adpstyle1.al 2.0398e+013.33e-02
1exqA/T0347-1exqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1exqA/T0347-1exqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0464e+013.06e+01 1b9dA c.55.3.2
1t70A/T0347-1t70A-t04-local-adpstyle1.a2m 1t70A/T0347-1t70A-t04-local-adpstyle1.al 2.1880e+011.40e+01

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001