# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xb4A 202 1.87e-01 1u5tC 202 1.96e-01 a.4.5.54,a.4.5.54 107688,107689 1exqA 154 7.92e-01 1b9dA c.55.3.2 33646 1iuhA 198 1.13e+00 d.61.1.2 83711 1a6m 151 2.97e+00 1a6m a.1.1.2 15018 1bzpA 153 3.20e+00 1a6m a.1.1.2 15020 1zz1A 369 3.72e+00 2mgb 154 4.16e+00 1a6m a.1.1.2 15102 2mgg 154 4.75e+00 1a6m a.1.1.2 15069 1mll 154 4.75e+00 1a6m a.1.1.2 15057 1mod 154 4.76e+00 1a6m a.1.1.2 15107 1mlg 154 4.76e+00 1a6m a.1.1.2 15104 1mlo 154 4.77e+00 1a6m a.1.1.2 15085 2spl 154 5.28e+00 1a6m a.1.1.2 15047 2dg5A 366 5.33e+00 1mym 154 6.43e+00 1a6m a.1.1.2 15054 1y81A 138 6.76e+00 1xvxA 312 7.17e+00 2aelA 374 7.53e+00 1h5uA 842 8.59e+00 1a8i c.87.1.4 60655 1e6iA 121 9.44e+00 1b91A a.29.2.1 16969 1zs9A 261 9.84e+00 1dwtA 153 1.12e+01 1a6m a.1.1.2 15190 1gjnA 153 1.13e+01 a.1.1.2 70191 2frfA 153 1.15e+01 1d9tA 289 1.16e+01 1deaA 1gqvA 135 1.19e+01 d.5.1.1 70376 1k99A 99 1.21e+01 a.21.1.1 68341 1hi2A 135 1.22e+01 7rsa d.5.1.1 61057 1oz2A 331 1.31e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1a8i 842 1.33e+01 1a8i c.87.1.4 35490 1bea 127 1.35e+01 1bea a.52.1.2 17826 1y0nA 78 1.41e+01 1ne7A 289 1.42e+01 c.124.1.1 91833 1ituA 369 1.57e+01 c.1.9.7 71423 1oe4A 247 1.57e+01 c.18.1.3 86895 1o20A 427 1.64e+01 c.82.1.1 86556 1f6dA 376 1.73e+01 1f6dA c.87.1.3 35467 2fhfA 1083 1.73e+01 2hbg 147 1.73e+01 2hbg a.1.1.2 15014 1anf 370 1.74e+01 4mbp c.94.1.1 35776 2bivA 243 1.79e+01 2cvxA 888 1.80e+01 1kiyA 374 1.83e+01 a.128.1.5 72555 1yc5A 246 1.89e+01 1yyqA 374 1.91e+01 1r1hA 696 1.92e+01 d.92.1.4 104756 1dmtA 696 1.93e+01 1dmtA d.92.1.4 40296 1nksA 194 1.94e+01 1nksA c.37.1.1 31886 103m 154 1.98e+01 1a6m a.1.1.2 15124 1vj1A 363 2.03e+01 b.35.1.2,c.2.1.1 100794,100795 1hq3C 136 2.04e+01 1aoiA a.22.1.1 16454 2cmwA 310 2.10e+01 1auvA 311 2.12e+01 1auvA c.30.1.5,d.142.1.3 31723,41558 1ylkA 172 2.14e+01 1st9A 143 2.16e+01 c.47.1.10 98987 1eokA 290 2.17e+01 1eokA c.1.8.5 28991 2f9sA 151 2.22e+01 2bbrA 195 2.35e+01 2pil 159 2.35e+01 2pil d.24.1.1 38376 1kx5B 102 2.47e+01 a.22.1.1 77594 1uc7A 125 2.50e+01 c.47.1.1 99163 1tfzA 424 2.53e+01 d.32.1.3,d.32.1.3 106886,106887 2fwhA 134 2.57e+01 1nnhA 294 2.67e+01 d.104.1.1 92005 1l4iA 206 2.68e+01 b.1.11.1,b.7.2.1 73564,73565 2czlA 272 2.77e+01 1zvtA 256 2.79e+01 1w85A 368 2.82e+01 2d5cA 263 2.82e+01 1hzyA 332 2.92e+01 1pscA c.1.9.3 61468 1tzyC 136 2.93e+01 a.22.1.1 107532 1cf2O 337 2.93e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1i0dA 332 2.94e+01 1pscA c.1.9.3 61487 1s9uA 207 2.97e+01 a.184.1.1 105390 1rypB 250 2.97e+01 1rypB d.153.1.4 41933 1s72I 162 2.99e+01 a.4.7.1 105328 1cydA 244 3.04e+01 1cydA c.2.1.2 29825 1eceA 358 3.16e+01 1eceA c.1.8.3 28813 1ef8A 261 3.28e+01 1ef8A c.14.1.3 30921 1jf3A 147 3.28e+01 a.1.1.2 71642 1afrA 345 3.36e+01 1afrA a.25.1.2 16805 1b0nA 111 3.37e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1mlwA 301 3.41e+01 d.178.1.1 79289 1o0pA 104 3.46e+01 d.58.7.1 86535 1qqyA 130 3.49e+01 3lzt d.2.1.2 36586 1mzgA 146 3.49e+01 d.224.1.1 79696 1ug7A 128 3.49e+01 a.24.24.1 107824 2b49A 287 3.50e+01 1wrjA 156 3.50e+01 2a65A 519 3.56e+01 1px5A 349 3.60e+01 a.160.1.2,d.218.1.6 95277,95278 2fdbM 164 3.68e+01 1zrn 232 3.70e+01 1qq5A c.108.1.1 43323 2btdA 210 3.75e+01 2b30A 301 3.75e+01 2cnqA 306 3.84e+01 1qrvA 73 3.90e+01 1cktA a.21.1.1 16425 2bnfB 241 4.00e+01 1obdA 306 4.11e+01 d.143.1.1 86767 1e7wA 291 4.18e+01 c.2.1.2 59373 2liv 344 4.21e+01 2liv c.93.1.1 35708 1omp 370 4.23e+01 4mbp c.94.1.1 35778 2f1sA 186 4.33e+01 2bg5A 324 4.35e+01 2bneA 241 4.36e+01 2ew8A 249 4.37e+01 1b4pA 217 4.37e+01 a.45.1.1,c.47.1.5 83158,83159 1avaA 403 4.37e+01 1jdc b.71.1.1,c.1.8.1 27797,28784 1cs1A 386 4.41e+01 1ibjA c.67.1.3 34399 1dixA 208 4.54e+01 1bk7A d.124.1.1 41122 1s9jA 341 4.60e+01 2a6sA 84 4.63e+01 1h6fA 193 4.66e+01 b.2.5.4 70901 1jpzA 473 4.68e+01 a.104.1.1 67069 2fnaA 357 4.76e+01 1xseA 295 4.77e+01 1m70A 190 4.88e+01 a.3.1.4,a.3.1.4 91200,91201 2a8yA 270 4.91e+01 1jug 125 4.91e+01 3lzt d.2.1.2 36587 1lwdA 413 4.97e+01 c.77.1.1 78265 1iybA 208 5.04e+01 d.124.1.1 90720 1x0rA 249 5.06e+01 1z15A 344 5.07e+01 1oq9A 363 5.11e+01 a.25.1.2 87257 1gpl 432 5.25e+01 1gpl b.12.1.2,c.69.1.19 23645,34793 1unlD 208 5.35e+01 1jsf 130 5.37e+01 3lzt d.2.1.2 36410 1lz1 130 5.47e+01 3lzt d.2.1.2 36415 1ads 315 5.50e+01 1frb c.1.7.1 28671 2gl5A 410 5.62e+01 1bu7A 455 5.70e+01 1bu7A a.104.1.1 18937 1o2dA 371 5.72e+01 e.22.1.2 86591 1d8dA 377 5.79e+01 1ft1A a.118.6.1 19185 1wxdA 263 5.84e+01 1ltqA 301 5.86e+01 c.108.1.9,c.37.1.1 78208,78209 1xw5A 217 5.87e+01 4mbp 370 5.94e+01 4mbp c.94.1.1 35777 2c4jA 218 6.00e+01 1mgpA 313 6.19e+01 c.119.1.1 79098 1sk7A 198 6.20e+01 a.132.1.2 105671 1urjA 1136 6.21e+01 2gs5A 198 6.24e+01 1e8gA 560 6.53e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 2g0uA 92 6.61e+01 1mw9X 592 6.77e+01 e.10.1.1 91480 1eu8A 409 6.78e+01 1eu8A c.94.1.1 59502 2d00A 109 6.79e+01 2g5dA 422 6.81e+01 1orsC 132 6.82e+01 f.14.1.1 87353 2dfkA 402 6.92e+01 1qvzA 237 6.94e+01 c.23.16.2 96453 1bl3A 160 6.95e+01 1b9dA c.55.3.2 33655 1g4wR 383 6.97e+01 1g4uS a.24.11.1,c.45.1.2 16644,32692 1b7dA 61 7.05e+01 1aho g.3.7.1 44139 1wzcA 249 7.08e+01 1rh5A 436 7.13e+01 f.41.1.1 97464 1oi1A 221 7.14e+01 b.34.9.3,b.34.9.3 87037,87038 1rzhM 307 7.39e+01 f.26.1.1 98165 1y4tA 322 7.43e+01 1dcs 311 7.48e+01 1dcs b.82.2.1 28124 1bn7A 294 7.69e+01 1bn6A c.69.1.8 34677 1ly1A 181 7.75e+01 c.37.1.1 74334 1pwmA 316 7.77e+01 c.1.7.1 95231 6rxn 46 7.81e+01 1rb9 g.41.5.1 45222 1laxA 370 7.85e+01 c.94.1.1 84576 1kepA 348 7.91e+01 c.2.1.2 68536 1us0A 316 8.07e+01 c.1.7.1 99850 1yewC 289 8.19e+01 1itg 166 8.39e+01 1b9dA c.55.3.2 33661 1zd3A 555 8.44e+01 6gsvA 217 8.67e+01 1b8xA a.45.1.1,c.47.1.5 17633,32925 1wp5A 323 8.67e+01 3thiA 371 8.71e+01 2thiA c.94.1.1 35792 1bkdS 439 8.71e+01 1bkdS a.117.1.1 19111 1v3vA 333 8.73e+01 b.35.1.2,c.2.1.1 108345,108346 1pii 452 8.90e+01 1pii c.1.2.4,c.1.2.4 28559,28563 1nw1A 429 8.98e+01 d.144.1.8 86286 1r6uA 437 8.98e+01 c.26.1.1 97163 1pdo 135 9.00e+01 1pdo c.54.1.1 33376