# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xb4A 202 5.74e-01 1zs9A 261 7.21e-01 1r1hA 696 8.07e-01 d.92.1.4 104756 1yy7A 213 9.58e-01 1dmtA 696 1.09e+00 1dmtA d.92.1.4 40296 1u5tC 202 1.11e+00 a.4.5.54,a.4.5.54 107688,107689 1ne7A 289 2.54e+00 c.124.1.1 91833 1d9tA 289 2.56e+00 1deaA 1kjnA 157 3.62e+00 c.115.1.1 72614 1u46A 291 3.66e+00 d.144.1.7 107656 1iwmA 186 4.57e+00 b.125.1.2 83758 1o6dA 163 6.93e+00 c.116.1.3 92567 1ignA 246 7.50e+00 1ignA a.4.1.6,a.4.1.6 16048,16049 1s2oA 244 7.65e+00 1k99A 99 7.86e+00 a.21.1.1 68341 1wzzA 334 8.19e+00 2es7A 142 8.22e+00 6ldh 330 9.30e+00 3ldh c.2.1.5,d.162.1.1 30161,42128 1xhnA 184 9.87e+00 1xvxA 312 1.15e+01 2daqA 110 1.27e+01 1lm8V 160 1.47e+01 b.3.3.1 74035 1gqvA 135 1.49e+01 d.5.1.1 70376 1hi2A 135 1.52e+01 7rsa d.5.1.1 61057 1vcbC 160 1.57e+01 1vcbC b.3.3.1 22535 1n3yA 198 1.60e+01 c.62.1.1 79976 1lo7A 141 1.65e+01 d.38.1.1 74144 1vr0A 247 1.75e+01 1bx1A 314 1.81e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1cy5A 97 1.82e+01 1cy5A a.77.1.3 18430 1bvqA 141 1.90e+01 1bvqA d.38.1.1 38542 1xkqA 280 1.95e+01 1fnc 314 1.97e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 2g3bA 208 1.98e+01 1dl5A 317 1.99e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1ckeA 227 2.01e+01 1ckeA c.37.1.1 31846 1f02T 66 2.12e+01 1f02T j.67.1.1 46360 1itwA 741 2.12e+01 c.77.1.2 76793 1fnd 314 2.23e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1nnhA 294 2.24e+01 d.104.1.1 92005 2gz4A 207 2.25e+01 2carA 196 2.31e+01 1exrA 148 2.33e+01 1cll a.39.1.5 17299 1y6zA 263 2.35e+01 1s72I 162 2.38e+01 a.4.7.1 105328 2cmwA 310 2.42e+01 1fxlA 167 2.62e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1rypF 233 2.67e+01 1rypF d.153.1.4 41937 1dwtA 153 2.71e+01 1a6m a.1.1.2 15190 1gjnA 153 2.72e+01 a.1.1.2 70191 1mbmA 198 2.78e+01 b.47.1.3 78916 1yzxA 226 2.83e+01 1zq6A 359 2.94e+01 1auvA 311 2.95e+01 1auvA c.30.1.5,d.142.1.3 31723,41558 1wxcA 281 2.96e+01 1o26A 232 2.99e+01 d.207.1.1 86566 2frfA 153 3.09e+01 1di6A 195 3.11e+01 1di6A c.57.1.1 33863 1wh0A 134 3.12e+01 1jpc 109 3.13e+01 1b2pA b.78.1.1 27986 2gaeA 346 3.35e+01 1io7A 368 3.37e+01 1f4tA a.104.1.1 18971 1vqoI 162 3.53e+01 1m0wA 491 3.55e+01 c.30.1.4,d.142.1.6 78363,78364 1vr4A 103 3.56e+01 2erfA 209 3.59e+01 1lmzA 187 3.60e+01 a.96.1.4 74037 1exqA 154 3.62e+01 1b9dA c.55.3.2 33646 1qysA 106 3.81e+01 k.41.1.1 96603 1tq8A 163 3.84e+01 c.26.2.4 107204 1xnfA 275 3.92e+01 1ujxA 119 3.98e+01 b.26.1.2 99473 1xyiA 66 4.01e+01 1yh1A 359 4.23e+01 2g8yA 385 4.27e+01 1v58A 241 4.29e+01 c.47.1.9,d.17.3.1 108371,108372 1cby 259 4.29e+01 1cby d.103.1.1 40705 1b4pA 217 4.31e+01 a.45.1.1,c.47.1.5 83158,83159 1zklA 353 4.31e+01 1dsxA 87 4.47e+01 1t1dA d.42.1.2 38644 1y9kA 157 4.63e+01 1jug 125 4.65e+01 3lzt d.2.1.2 36587 1tig 94 4.69e+01 1tig d.68.1.1 39566 1p9kA 79 4.70e+01 d.66.1.6 94392 1hr6A 475 4.74e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1nekA 588 4.75e+01 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1wp5A 323 4.76e+01 1cojA 212 4.77e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1tueA 212 4.81e+01 c.37.1.20 107323 1lz1 130 4.81e+01 3lzt d.2.1.2 36415 2ae0X 345 4.83e+01 1mai 131 4.98e+01 1mai b.55.1.1 26951 1jtdB 273 4.98e+01 b.69.5.2 67265 1azpA 66 4.98e+01 1azpA b.34.13.1 37467 1iuhA 198 5.06e+01 d.61.1.2 83711 1lxnA 99 5.12e+01 d.58.48.1 84737 1jl5A 454 5.19e+01 c.10.2.6 66830 2fa8A 105 5.33e+01 1wpbA 172 5.34e+01 1gkmA 509 5.35e+01 a.127.1.2 70228 1bzpA 153 5.49e+01 1a6m a.1.1.2 15020 1mvcA 240 5.62e+01 a.123.1.1 79499 1pswA 348 5.63e+01 c.87.1.7 88287 1vp7A 100 5.73e+01 1a68 95 5.79e+01 1t1dA d.42.1.2 38639 1kdoA 227 5.86e+01 c.37.1.1 68478 1g38A 393 5.89e+01 2admA c.66.1.27 60235 1dk8A 147 5.89e+01 1agrE a.91.1.1 18548 1jr5A 90 5.91e+01 a.150.1.1 67113 1z0kB 69 6.02e+01 1bkdS 439 6.02e+01 1bkdS a.117.1.1 19111 1h7cA 108 6.11e+01 a.7.5.1 70914 1nuuA 252 6.15e+01 c.26.1.3 86209 1cfzA 162 6.16e+01 1cfzA c.56.1.1 33754 2bnfB 241 6.23e+01 1yfbA 59 6.29e+01 1rl2A 137 6.32e+01 1rl2A b.34.5.3,b.40.4.5 24610,25342 1z23A 163 6.34e+01 1jsf 130 6.36e+01 3lzt d.2.1.2 36410 1oksA 56 6.38e+01 a.8.5.1 93271 1b8fA 509 6.45e+01 1b8fA a.127.1.2 19434 1nnxA 109 6.48e+01 b.40.10.1 92013 1k6kA 143 6.50e+01 a.174.1.1 77274 1vyqA 173 6.51e+01 2f3yA 148 6.52e+01 1ug7A 128 6.55e+01 a.24.24.1 107824 1xriA 151 6.64e+01 1fjgC 239 6.67e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 2bf6A 449 6.77e+01 1imjA 210 6.87e+01 c.69.1.23 71246 1eceA 358 6.91e+01 1eceA c.1.8.3 28813 1dyoA 160 6.97e+01 1dyoA b.18.1.7 23771 1s1pA 331 7.01e+01 c.1.7.1 98350 1broA 277 7.16e+01 1brt c.69.1.12 34700 1a0cA 438 7.17e+01 1a0cA c.1.15.3 29529 1i1qB 192 7.21e+01 1qdlB c.23.16.1 61544 1a6m 151 7.22e+01 1a6m a.1.1.2 15018 3thiA 371 7.24e+01 2thiA c.94.1.1 35792 2c4jA 218 7.29e+01 1q2zA 120 7.34e+01 a.118.19.1 95656 2bivA 243 7.37e+01 1y0nA 78 7.44e+01 1w98B 283 7.45e+01 1g8kA 825 7.56e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 2b30A 301 7.58e+01 1q6cA 495 7.60e+01 c.1.8.1 95970 1dp4A 435 7.62e+01 1dp4A c.93.1.1 35710 1gvnB 287 7.71e+01 c.37.1.21 76354 1zpdA 568 7.76e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1w1kA 560 7.76e+01 d.58.32.1,d.145.1.1 109059,109060 1rypL 212 7.80e+01 d.153.1.4 41880 2gp5A 349 7.84e+01 2ctc 307 7.86e+01 1aye c.56.5.1 33802 1hc7A 477 7.87e+01 1hc7A c.51.1.1,d.104.1.1,d.68.5.1 60938,60939,60940 1j57A 143 7.90e+01 d.221.1.1 77079 1x0rA 249 7.91e+01 2f9sA 151 7.98e+01 1mlg 154 7.99e+01 1a6m a.1.1.2 15104 1vplA 256 8.00e+01 1fjgT 106 8.10e+01 1fjfT a.7.6.1 16338 2fm9A 215 8.12e+01 3ygsP 97 8.16e+01 3ygsP a.77.1.3 18435 1sdwA 314 8.17e+01 b.121.1.2,b.121.1.2 98810,98811 1yzqA 170 8.19e+01 1fjgK 129 8.31e+01 1fjfK c.55.4.1 33733 1v3hA 495 8.32e+01 c.1.8.1 108303 1px5A 349 8.36e+01 a.160.1.2,d.218.1.6 95277,95278 2b7aA 293 8.38e+01 1ymtA 246 8.43e+01 1xw5A 217 8.56e+01 2bneA 241 8.56e+01 1o58A 303 8.59e+01 c.79.1.1 92491 1hdoA 206 8.62e+01 1he2A c.2.1.2 60965 1xkpB 124 8.69e+01 1wpoA 256 8.73e+01 1lay b.57.1.1 27012 2awiA 317 8.76e+01 1agi 125 8.77e+01 7rsa d.5.1.1 37303 1wdpA 495 8.84e+01 1ye8A 178 8.89e+01 1nz6A 101 8.93e+01 a.2.3.1 86441 1xd8A 289 8.95e+01