# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xb4A 202 4.91e-01 1u5tC 202 9.44e-01 a.4.5.54,a.4.5.54 107688,107689 1ne7A 289 2.53e+00 c.124.1.1 91833 1d9tA 289 2.56e+00 1deaA 1kiyA 374 3.19e+00 a.128.1.5 72555 1yyqA 374 3.57e+00 2aelA 374 3.63e+00 1exqA 154 4.91e+00 1b9dA c.55.3.2 33646 1zz1A 369 6.46e+00 1y9kA 157 7.58e+00 1zs9A 261 7.79e+00 1iuhA 198 9.81e+00 d.61.1.2 83711 1sk7A 198 1.23e+01 a.132.1.2 105671 1z0kB 69 1.60e+01 2bivA 243 1.63e+01 1gqvA 135 1.64e+01 d.5.1.1 70376 1hi2A 135 1.67e+01 7rsa d.5.1.1 61057 1k1xA 659 1.69e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2bnfB 241 1.81e+01 1o20A 427 1.83e+01 c.82.1.1 86556 1eceA 358 1.84e+01 1eceA c.1.8.3 28813 1oz2A 331 1.91e+01 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 2bneA 241 2.13e+01 1cf2O 337 2.20e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1dseA 292 2.26e+01 1ryc a.93.1.1 59130 1yy5B 513 2.30e+01 1yfbA 59 2.35e+01 1wy9A 147 2.48e+01 1g4yR 148 2.73e+01 1cll a.39.1.5 60252 2es7A 142 2.76e+01 2gz4A 207 2.90e+01 1yz4A 160 2.91e+01 1rsgA 516 3.00e+01 2eutA 294 3.02e+01 1jdrA 294 3.15e+01 1ryc a.93.1.1 62908 1mlg 154 3.19e+01 1a6m a.1.1.2 15104 1x0rA 249 3.22e+01 1a6m 151 3.23e+01 1a6m a.1.1.2 15018 1dqzA 280 3.30e+01 1dqyA c.69.1.3 34638 1nekA 588 3.40e+01 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1r1hA 696 3.44e+01 d.92.1.4 104756 1dmtA 696 3.44e+01 1dmtA d.92.1.4 40296 1n3yA 198 3.44e+01 c.62.1.1 79976 1gjnA 153 3.51e+01 a.1.1.2 70191 1inlA 296 3.53e+01 c.66.1.17 66220 1nksA 194 3.58e+01 1nksA c.37.1.1 31886 1z53A 294 3.59e+01 1zbyA 294 3.59e+01 1bzpA 153 3.63e+01 1a6m a.1.1.2 15020 1bkdS 439 3.76e+01 1bkdS a.117.1.1 19111 2fhfA 1083 3.77e+01 1dwtA 153 3.82e+01 1a6m a.1.1.2 15190 1laxA 370 3.86e+01 c.94.1.1 84576 1zklA 353 3.86e+01 2bn5A 33 3.92e+01 1anf 370 4.08e+01 4mbp c.94.1.1 35776 2ew8A 249 4.08e+01 1zpdA 568 4.11e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1omp 370 4.23e+01 4mbp c.94.1.1 35778 2frfA 153 4.26e+01 4mbp 370 4.29e+01 4mbp c.94.1.1 35777 103m 154 4.30e+01 1a6m a.1.1.2 15124 1nvvS 481 4.34e+01 a.117.1.1 86279 1b0nA 111 4.35e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 2mgb 154 4.47e+01 1a6m a.1.1.2 15102 1mgpA 313 4.47e+01 c.119.1.1 79098 1mlo 154 4.48e+01 1a6m a.1.1.2 15085 1mod 154 4.48e+01 1a6m a.1.1.2 15107 1k99A 99 4.50e+01 a.21.1.1 68341 1exrA 148 4.62e+01 1cll a.39.1.5 17299 1cydA 244 4.66e+01 1cydA c.2.1.2 29825 1eokA 290 4.68e+01 1eokA c.1.8.5 28991 1mll 154 4.69e+01 1a6m a.1.1.2 15057 2cmwA 310 4.76e+01 2ffjA 300 4.80e+01 1ltqA 301 4.80e+01 c.108.1.9,c.37.1.1 78208,78209 1vr0A 247 4.80e+01 1kx5B 102 4.87e+01 a.22.1.1 77594 1mym 154 4.94e+01 1a6m a.1.1.2 15054 1lmzA 187 4.99e+01 a.96.1.4 74037 1oc2A 348 5.05e+01 c.2.1.2 92765 1b4pA 217 5.08e+01 a.45.1.1,c.47.1.5 83158,83159 1zrn 232 5.10e+01 1qq5A c.108.1.1 43323 1kepA 348 5.10e+01 c.2.1.2 68536 1auvA 311 5.23e+01 1auvA c.30.1.5,d.142.1.3 31723,41558 1avsA 90 5.27e+01 1cll a.39.1.5 17226 1iwmA 186 5.37e+01 b.125.1.2 83758 1qghA 156 5.40e+01 1qghA a.25.1.1 16728 1psrA 100 5.44e+01 1psrA a.39.1.2 17180 1xriA 151 5.44e+01 1f0nA 285 5.47e+01 1dqyA c.69.1.3 34636 1za0A 275 5.59e+01 1xkqA 280 5.62e+01 1mw9X 592 5.63e+01 e.10.1.1 91480 1mkrA 294 5.66e+01 a.93.1.1 84997 1oe4A 247 5.67e+01 c.18.1.3 86895 2bbrA 195 5.87e+01 1ylkA 172 6.00e+01 2f3yA 148 6.02e+01 2a6sA 84 6.10e+01 2spl 154 6.13e+01 1a6m a.1.1.2 15047 1jug 125 6.17e+01 3lzt d.2.1.2 36587 1rxqA 178 6.22e+01 a.213.1.1 105118 2btdA 210 6.26e+01 1l5wA 796 6.27e+01 c.87.1.4 73605 2erfA 209 6.47e+01 1s72I 162 6.51e+01 a.4.7.1 105328 1tfzA 424 6.56e+01 d.32.1.3,d.32.1.3 106886,106887 2abbA 364 6.61e+01 1ly1A 181 6.62e+01 c.37.1.1 74334 1aihA 170 6.66e+01 1aihA d.163.1.1 42149 1xsnA 335 6.68e+01 1rypF 233 6.69e+01 1rypF d.153.1.4 41937 2b0tA 738 6.79e+01 1wrjA 156 6.82e+01 1eqcA 394 6.82e+01 1cz1A c.1.8.3 28811 1w85A 368 7.12e+01 1yqgA 263 7.14e+01 1i0dA 332 7.24e+01 1pscA c.1.9.3 61487 1dp4A 435 7.34e+01 1dp4A c.93.1.1 35710 1tzyC 136 7.39e+01 a.22.1.1 107532 1tn4 159 7.41e+01 1ncx a.39.1.5 17248 1e7wA 291 7.44e+01 c.2.1.2 59373 1mlwA 301 7.48e+01 d.178.1.1 79289 1fjgD 209 7.52e+01 1c05A d.66.1.2 39553 1oi1A 221 7.61e+01 b.34.9.3,b.34.9.3 87037,87038 1mvcA 240 7.79e+01 a.123.1.1 79499 2mgg 154 7.80e+01 1a6m a.1.1.2 15069 1r7aA 504 7.85e+01 b.71.1.1,c.1.8.1 97192,97193 1rztA 331 7.86e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 2a1fA 247 7.86e+01 2a5yA 204 8.00e+01 1z0rA 53 8.22e+01 1k9uA 78 8.40e+01 a.39.1.10 84348 1xw8A 252 8.42e+01 1rd5A 262 8.43e+01 1s9uA 207 8.58e+01 a.184.1.1 105390 2bcqA 335 8.62e+01 1xzoA 174 8.63e+01 1emvB 134 8.70e+01 1bxiB d.4.1.1 37135 1j8bA 112 8.70e+01 d.222.1.1 77101 1hq3C 136 8.80e+01 1aoiA a.22.1.1 16454 2gviA 204 8.89e+01 1uvjA 664 8.97e+01 e.8.1.6 100045 1ois 223 8.98e+01 1a36A e.15.1.1 43267