# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xb4A 202 1.23e-01 1u5tC 202 1.48e-01 a.4.5.54,a.4.5.54 107688,107689 1iuhA 198 5.66e-01 d.61.1.2 83711 1xvxA 312 1.35e+00 1exqA 154 1.38e+00 1b9dA c.55.3.2 33646 2cvxA 888 1.69e+00 1wkaA 147 2.07e+00 1nekA 588 2.52e+00 a.7.3.1,c.3.1.4,d.168.1.1 80426,80427,80428 1qqyA 130 2.73e+00 3lzt d.2.1.2 36586 1zz1A 369 3.00e+00 1a48 306 3.49e+00 1a48 d.143.1.1 41590 1y9kA 157 3.54e+00 1w85A 368 3.70e+00 2cnqA 306 3.72e+00 1kiyA 374 3.76e+00 a.128.1.5 72555 2fdbM 164 3.94e+00 1d9tA 289 3.99e+00 1deaA 1obdA 306 3.99e+00 d.143.1.1 86767 1y81A 138 4.05e+00 2aelA 374 4.12e+00 1yyqA 374 4.17e+00 1oz2A 331 4.22e+00 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 1a6m 151 4.37e+00 1a6m a.1.1.2 15018 2abbA 364 4.63e+00 1bzpA 153 4.91e+00 1a6m a.1.1.2 15020 1oe4A 247 5.13e+00 c.18.1.3 86895 2bivA 243 5.51e+00 1ne7A 289 5.58e+00 c.124.1.1 91833 1cf2O 337 5.59e+00 1b7gO c.2.1.3,d.81.1.1 29994,39909 1lz1 130 6.17e+00 3lzt d.2.1.2 36415 1gqvA 135 6.21e+00 d.5.1.1 70376 1pv5A 264 6.24e+00 d.251.1.1 95150 1jsf 130 6.30e+00 3lzt d.2.1.2 36410 1mlg 154 6.34e+00 1a6m a.1.1.2 15104 1hi2A 135 6.38e+00 7rsa d.5.1.1 61057 1eceA 358 6.52e+00 1eceA c.1.8.3 28813 1y0nA 78 6.53e+00 103m 154 6.85e+00 1a6m a.1.1.2 15124 1nksA 194 6.86e+00 1nksA c.37.1.1 31886 1mll 154 6.96e+00 1a6m a.1.1.2 15057 1mod 154 6.98e+00 1a6m a.1.1.2 15107 1mlo 154 7.23e+00 1a6m a.1.1.2 15085 2b49A 287 7.31e+00 2bneA 241 7.45e+00 1k99A 99 7.50e+00 a.21.1.1 68341 1mym 154 7.50e+00 1a6m a.1.1.2 15054 1uc7A 125 7.56e+00 c.47.1.1 99163 2mgb 154 7.65e+00 1a6m a.1.1.2 15102 1kx5B 102 7.94e+00 a.22.1.1 77594 2fwhA 134 8.17e+00 1o20A 427 8.25e+00 c.82.1.1 86556 2spl 154 8.28e+00 1a6m a.1.1.2 15047 2bnfB 241 8.28e+00 1e7wA 291 8.48e+00 c.2.1.2 59373 1g4yR 148 8.71e+00 1cll a.39.1.5 60252 1zpdA 568 8.92e+00 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1cydA 244 9.32e+00 1cydA c.2.1.2 29825 1wtaA 275 9.75e+00 1ro2A 216 9.81e+00 d.264.1.2 97665 1dixA 208 1.09e+01 1bk7A d.124.1.1 41122 1tueA 212 1.09e+01 c.37.1.20 107323 1ro0A 216 1.15e+01 d.264.1.2 97664 2pil 159 1.19e+01 2pil d.24.1.1 38376 1z15A 344 1.20e+01 1iybA 208 1.27e+01 d.124.1.1 90720 2bbrA 195 1.31e+01 1zs9A 261 1.32e+01 1gjnA 153 1.32e+01 a.1.1.2 70191 1yewC 289 1.34e+01 1l4iA 206 1.34e+01 b.1.11.1,b.7.2.1 73564,73565 1b7dA 61 1.37e+01 1aho g.3.7.1 44139 1npiA 61 1.37e+01 g.3.7.1 80685 2ew8A 249 1.43e+01 2erfA 209 1.44e+01 2frfA 153 1.48e+01 2a8yA 270 1.49e+01 1dwtA 153 1.49e+01 1a6m a.1.1.2 15190 1z0kB 69 1.52e+01 1za0A 275 1.54e+01 2ch0A 133 1.56e+01 2a1fA 247 1.60e+01 1gvoA 364 1.61e+01 c.1.4.1 76357 1h61A 364 1.61e+01 1oyc c.1.4.1 60657 1vyrA 364 1.62e+01 c.1.4.1 108906 1jug 125 1.64e+01 3lzt d.2.1.2 36587 1bkdS 439 1.67e+01 1bkdS a.117.1.1 19111 1sv0C 82 1.71e+01 a.60.1.1 106037 2fhfA 1083 1.76e+01 1tc5A 194 1.79e+01 c.110.1.1 106752 2bn5A 33 1.79e+01 2sas 185 1.80e+01 2sas a.39.1.5 17258 1h5uA 842 1.82e+01 1a8i c.87.1.4 60655 1tfzA 424 1.85e+01 d.32.1.3,d.32.1.3 106886,106887 1s1pA 331 1.86e+01 c.1.7.1 98350 1s2oA 244 1.87e+01 1ylkA 172 1.87e+01 2aa1B 146 1.88e+01 1qi9A 556 1.89e+01 1qhbA a.111.1.2 19053 1a8i 842 1.90e+01 1a8i c.87.1.4 35490 1ff9A 450 1.92e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1rztA 331 1.95e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1q1uA 144 2.00e+01 b.42.1.1 95608 2mgg 154 2.05e+01 1a6m a.1.1.2 15069 2dg5A 366 2.09e+01 2gz4A 207 2.10e+01 2gsfA 373 2.10e+01 2abqA 306 2.13e+01 2gs5A 198 2.13e+01 1pwmA 316 2.15e+01 c.1.7.1 95231 1f0nA 285 2.15e+01 1dqyA c.69.1.3 34636 1wrjA 156 2.16e+01 1mngA 203 2.28e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1oi1A 221 2.37e+01 b.34.9.3,b.34.9.3 87037,87038 2b30A 301 2.37e+01 1xzoA 174 2.40e+01 1np7A 489 2.40e+01 a.99.1.1,c.28.1.1 80677,80678 1cei 94 2.42e+01 1cei a.28.2.1 16939 2a65A 519 2.47e+01 1k6xA 352 2.48e+01 c.2.1.2 68238 1p3dA 475 2.49e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 2ftwA 521 2.51e+01 1b4pA 217 2.51e+01 a.45.1.1,c.47.1.5 83158,83159 1zoyA 622 2.55e+01 1vypX 364 2.58e+01 c.1.4.1 108905 1ag6 99 2.62e+01 1plc b.6.1.1 22857 2es7A 142 2.62e+01 1ltqA 301 2.64e+01 c.108.1.9,c.37.1.1 78208,78209 1zvtA 256 2.65e+01 1xgkA 352 2.71e+01 1htrP 43 2.71e+01 1htrP b.50.1.2 26852 1r0pA 312 2.72e+01 d.144.1.7 96734 1vflA 356 2.77e+01 1auvA 311 2.78e+01 1auvA c.30.1.5,d.142.1.3 31723,41558 1f3mC 297 2.79e+01 1hcl d.144.1.7 41677 2f1sA 186 2.80e+01 1uvjA 664 2.81e+01 e.8.1.6 100045 1nzjA 298 2.81e+01 c.26.1.1 92377 1dqzA 280 2.82e+01 1dqyA c.69.1.3 34638 1k28A 584 2.85e+01 b.40.8.1,b.108.1.2,d.2.1.3 68049,68050,68051 1vm8A 534 2.85e+01 1yfbA 59 2.88e+01 1hhsA 664 2.89e+01 1hi0P e.8.1.6 61045 2f9zC 159 2.94e+01 1amy 403 2.95e+01 1jdc b.71.1.1,c.1.8.1 27799,28786 1gnlA 544 2.96e+01 e.26.1.1 70287 1xw8A 252 2.98e+01 1lngA 87 3.02e+01 d.201.1.1 74045 1aua 296 3.04e+01 1aua a.5.3.1,c.13.1.1 16290,30882 16pk 415 3.04e+01 16pk c.86.1.1 35454 1xsnA 335 3.06e+01 1h1yA 228 3.10e+01 c.1.2.2 76506 1pii 452 3.10e+01 1pii c.1.2.4,c.1.2.4 28559,28563 1j5vA 351 3.11e+01 c.72.1.1 71585 1apyA 162 3.13e+01 1apyA d.153.1.5 42004 2g0uA 92 3.13e+01 1w96A 554 3.16e+01 1x7yA 400 3.16e+01 1hdoA 206 3.16e+01 1he2A c.2.1.2 60965 1zv9A 172 3.17e+01 1ly1A 181 3.17e+01 c.37.1.1 74334 1k4cC 124 3.21e+01 f.14.1.1 68130 1r3jC 124 3.21e+01 f.14.1.1 96932 1bk7A 190 3.25e+01 1bk7A d.124.1.1 41121 1bu7A 455 3.25e+01 1bu7A a.104.1.1 18937 1v1rA 400 3.27e+01 c.36.1.11 108272 1w1iE 357 3.32e+01 c.1.9.1 109051 1ituA 369 3.33e+01 c.1.9.7 71423 1ektA 53 3.35e+01 1ektA b.129.1.3 38764 1m65A 245 3.36e+01 c.6.3.1 84847 1rd5A 262 3.40e+01 1bwzA 274 3.41e+01 1bwzA d.21.1.1,d.21.1.1 38337,38338 1oshA 232 3.41e+01 a.123.1.1 93496 2g09A 297 3.45e+01 1unlD 208 3.48e+01 1sauA 115 3.50e+01 1tn6A 382 3.50e+01 1eokA 290 3.54e+01 1eokA c.1.8.5 28991 1zrn 232 3.57e+01 1qq5A c.108.1.1 43323 1s72I 162 3.61e+01 a.4.7.1 105328 2plt 98 3.66e+01 1plc b.6.1.1 22862 1f6dA 376 3.70e+01 1f6dA c.87.1.3 35467 1whzA 70 3.70e+01 1dptA 117 3.73e+01 1dptA d.80.1.3 39862 2liv 344 3.78e+01 2liv c.93.1.1 35708 1ignA 246 3.81e+01 1ignA a.4.1.6,a.4.1.6 16048,16049 2bfdA 400 3.81e+01 1o0pA 104 3.83e+01 d.58.7.1 86535 2gviA 204 3.85e+01 2bznA 351 3.89e+01 1vr5A 547 3.94e+01 1wdpA 495 3.96e+01 2fiyA 309 3.99e+01 2bcqA 335 4.00e+01 1ls6A 295 4.00e+01 c.37.1.5 91115 1ihkA 174 4.01e+01 1bfg b.42.1.1 62384 1i60A 278 4.05e+01 c.1.15.4 71118 1v3hA 495 4.06e+01 c.1.8.1 108303 1q6cA 495 4.08e+01 c.1.8.1 95970 1olsA 400 4.08e+01 c.36.1.11 93331 1mjc 69 4.09e+01 1mjc b.40.4.5 25319 1yhuB 144 4.12e+01 1ek1A 554 4.20e+01 1cr6B c.69.1.11,c.108.1.2 34685,43335 1qznA 173 4.20e+01 b.2.2.2 104669 1vlmA 219 4.22e+01 c.66.1.41 108836 1lwdA 413 4.22e+01 c.77.1.1 78265 1xjeA 644 4.23e+01 1us0A 316 4.25e+01 c.1.7.1 99850 2dfkA 402 4.27e+01 2gh1A 301 4.27e+01 1aerA 205 4.42e+01 1aerA d.166.1.1 42249 1orsC 132 4.44e+01 f.14.1.1 87353 1bea 127 4.45e+01 1bea a.52.1.2 17826 1j99A 293 4.47e+01 c.37.1.5 71618 1o5iA 249 4.47e+01 c.2.1.2 92499 1nuuA 252 4.49e+01 c.26.1.3 86209 1wzcA 249 4.52e+01 1mlwA 301 4.55e+01 d.178.1.1 79289 1zd3A 555 4.57e+01 1erzA 303 4.57e+01 1erzA d.160.1.2 59498 1ob8A 135 4.58e+01 1ijtA 128 4.60e+01 1bfg b.42.1.1 62510 1uf5A 303 4.60e+01 d.160.1.2 107808 1ht6A 405 4.61e+01 b.71.1.1,c.1.8.1 83629,83630 1wp5A 323 4.64e+01 1ads 315 4.65e+01 1frb c.1.7.1 28671 2ffjA 300 4.68e+01 1h6fA 193 4.68e+01 b.2.5.4 70901 1yj7A 171 4.72e+01 1zklA 353 4.72e+01 1bif 469 4.74e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1vj5A 555 4.75e+01 c.108.1.2,c.69.1.11 100799,100800 1htjF 210 4.76e+01 1htjF a.91.1.1 61254 1wxdA 263 4.79e+01 1k8qA 377 4.82e+01 c.69.1.6 72177 1augA 215 4.82e+01 1a2zA c.56.4.1 33798 1eiwA 111 4.83e+01 1eiwA c.23.3.1 31130 1iwmA 186 4.89e+01 b.125.1.2 83758 1sk7A 198 4.93e+01 a.132.1.2 105671 1fobA 334 4.94e+01 c.1.8.3 83255 1ug7A 128 4.95e+01 a.24.24.1 107824 2an3A 289 5.02e+01 2cy0A 263 5.02e+01 1n7kA 234 5.04e+01 c.1.10.1 85374 1x9mA 698 5.07e+01 1l4dB 122 5.12e+01 d.15.5.1 77684 1bl3A 160 5.15e+01 1b9dA c.55.3.2 33655 1anf 370 5.17e+01 4mbp c.94.1.1 35776 2b0tA 738 5.18e+01 1ucdA 190 5.25e+01 d.124.1.1 107767 1usyA 275 5.25e+01 1nnhA 294 5.29e+01 d.104.1.1 92005 1bn7A 294 5.29e+01 1bn6A c.69.1.8 34677 1nvvS 481 5.30e+01 a.117.1.1 86279 1o2dA 371 5.33e+01 e.22.1.2 86591 3htsB 102 5.35e+01 2hts a.4.5.22 16175 1b0nA 111 5.37e+01 1b0nA a.34.1.1,a.35.1.3 17001,17064 1byb 495 5.41e+01 1byb c.1.8.1 28790 1ye8A 178 5.42e+01 1oj7A 408 5.46e+01 e.22.1.2 103971 1seiA 130 5.48e+01 1seiA d.140.1.1 41463 1yc5A 246 5.49e+01 1jmxA 494 5.50e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1st9A 143 5.57e+01 c.47.1.10 98987 1avaA 403 5.59e+01 1jdc b.71.1.1,c.1.8.1 27797,28784 2bjbA 462 5.69e+01 1j95A 125 5.71e+01 1bl8A f.14.1.1 62749 1xriA 151 5.81e+01 1lmzA 187 5.81e+01 a.96.1.4 74037 1gpl 432 5.81e+01 1gpl b.12.1.2,c.69.1.19 23645,34793 1u0kA 288 5.90e+01 d.21.1.2,d.21.1.2 107547,107548 1k1xA 659 5.91e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1yw5A 177 5.94e+01 1un7A 400 5.94e+01 b.92.1.5,c.1.9.10 99657,99658 2cmwA 310 5.98e+01 1ucaA 190 6.01e+01 d.124.1.1 88462 1ucnA 152 6.04e+01 d.58.6.1 99183 1ustA 93 6.05e+01 a.4.5.13 99884 1bf2 750 6.06e+01 1bf2 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 1v25A 541 6.10e+01 e.23.1.1 108275 1bzkA 43 6.12e+01 1bzkA j.35.1.1 46250 1mkmA 249 6.13e+01 a.4.5.33,d.110.2.2 79242,79243 1ihgA 370 6.13e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1regX 122 6.17e+01 1regX d.58.27.1 39406 1zu4A 320 6.19e+01 2agtA 319 6.20e+01 1wzzA 334 6.21e+01 1wkqA 164 6.26e+01 c.97.1.2 109393 1q7zA 566 6.33e+01 c.1.21.2,c.1.26.1 96090,96091 1qkkA 155 6.34e+01 1dbwA c.23.1.1 31104 1yhvA 297 6.45e+01 1mw9X 592 6.45e+01 e.10.1.1 91480 1v3vA 333 6.47e+01 b.35.1.2,c.2.1.1 108345,108346 1hlgA 371 6.50e+01 1hlgA c.69.1.6 34656 1zrzA 364 6.50e+01 2c4jA 218 6.55e+01 6gsvA 217 6.64e+01 1b8xA a.45.1.1,c.47.1.5 17633,32925 1e2uA 553 6.64e+01 1e1dA e.26.1.1 43362 1xrtA 467 6.65e+01 1x0rA 249 6.73e+01 2a6sA 84 6.84e+01 6rxn 46 6.87e+01 1rb9 g.41.5.1 45222 1dseA 292 6.87e+01 1ryc a.93.1.1 59130 1r5lA 262 6.91e+01 a.5.3.1,c.13.1.1 97099,97100 1w7lA 422 6.92e+01 c.67.1.1 109226 2d5cA 263 6.93e+01 1j96A 323 6.93e+01 c.1.7.1 71616 2f6eA 127 6.94e+01 1jdlA 121 6.94e+01 a.3.1.1 66557 1uf2A 1019 6.97e+01 e.28.1.2 99289 1gqzA 274 7.00e+01 d.21.1.1,d.21.1.1 83311,83312 1rh5A 436 7.01e+01 f.41.1.1 97464 2hts 88 7.03e+01 2hts a.4.5.22 16174 1qrvA 73 7.06e+01 1cktA a.21.1.1 16425 2afbA 351 7.10e+01 1xw5A 217 7.12e+01 1ja9A 274 7.12e+01 c.2.1.2 62817 2btdA 210 7.17e+01 1wtyA 119 7.18e+01 1omp 370 7.20e+01 4mbp c.94.1.1 35778 1ax4A 467 7.21e+01 1ax4A c.67.1.2 34391 1gewA 356 7.24e+01 1gewA c.67.1.1 60470 2a2pA 129 7.26e+01 1j7dA 145 7.29e+01 1jatB d.20.1.1 62680 1wk8A 194 7.31e+01 1xkpB 124 7.33e+01 1jpzA 473 7.33e+01 a.104.1.1 67069 1laxA 370 7.35e+01 c.94.1.1 84576 1fmcA 255 7.37e+01 1cydA c.2.1.2 29856 1rxqA 178 7.42e+01 a.213.1.1 105118 1t0fC 54 7.48e+01 1iro 54 7.49e+01 1rb9 g.41.5.1 45223 1umdA 367 7.51e+01 c.36.1.11 99599 1j58A 385 7.55e+01 b.82.1.2 71531 1ybdA 239 7.56e+01 1tq8A 163 7.57e+01 c.26.2.4 107204 2c1iA 431 7.58e+01 1w68A 390 7.59e+01 a.25.1.2 109216 1dp4A 435 7.61e+01 1dp4A c.93.1.1 35710 1l5wA 796 7.68e+01 c.87.1.4 73605 1kb0A 677 7.81e+01 a.3.1.6,b.70.1.1 68378,68379 1psrA 100 7.82e+01 1psrA a.39.1.2 17180 1aihA 170 7.86e+01 1aihA d.163.1.1 42149 1nbwB 117 7.86e+01 c.51.3.2 80396 3thiA 371 7.88e+01 2thiA c.94.1.1 35792 1wn5A 130 7.89e+01 1zxfA 155 7.91e+01 2f96A 224 7.93e+01 1u5tA 233 8.02e+01 a.4.5.54,a.4.5.54 107684,107685 1gntA 553 8.06e+01 e.26.1.1 70290 1vf8A 377 8.07e+01 1oc2A 348 8.08e+01 c.2.1.2 92765 1jq0A 84 8.08e+01 h.3.2.1 71786 1w2wB 191 8.11e+01 4mbp 370 8.12e+01 4mbp c.94.1.1 35777 1yqgA 263 8.14e+01 1gmeA 151 8.15e+01 b.15.1.1 65305 1x6mA 196 8.18e+01 2cbuA 468 8.18e+01 1uz1A 468 8.19e+01 1woyA 500 8.22e+01 1nf3A 195 8.27e+01 c.37.1.8 85594 1ur4A 399 8.28e+01 1epxA 370 8.30e+01 1fbaA c.1.10.1 29150 1y4tA 322 8.31e+01 2ajfE 180 8.37e+01 1hfeL 421 8.37e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1dcs 311 8.38e+01 1dcs b.82.2.1 28124 1w3jA 468 8.39e+01 c.1.8.4 109156 2carA 196 8.40e+01 2f6rA 281 8.41e+01 1zelA 298 8.49e+01 1e9lA 377 8.50e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 2a5yA 204 8.51e+01 2f9sA 151 8.52e+01 2dd8S 202 8.60e+01 1p9kA 79 8.72e+01 d.66.1.6 94392 1u55A 188 8.75e+01 d.278.1.1 107677 1dvpA 220 8.75e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 2c0rA 362 8.77e+01 2a0kA 161 8.78e+01 2f2tA 161 8.78e+01 1d8dA 377 8.78e+01 1ft1A a.118.6.1 19185 1cs1A 386 8.80e+01 1ibjA c.67.1.3 34399 1px5A 349 8.89e+01 a.160.1.2,d.218.1.6 95277,95278 1w3uA 362 8.93e+01 1r1hA 696 8.93e+01 d.92.1.4 104756 1m70A 190 8.93e+01 a.3.1.4,a.3.1.4 91200,91201