# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xb4A 202 9.71e-01 1vr0A 247 1.50e+00 1u5tC 202 2.09e+00 a.4.5.54,a.4.5.54 107688,107689 1b4pA 217 2.33e+00 a.45.1.1,c.47.1.5 83158,83159 1dmtA 696 3.37e+00 1dmtA d.92.1.4 40296 1zs9A 261 3.65e+00 1u46A 291 4.20e+00 d.144.1.7 107656 1r1hA 696 5.08e+00 d.92.1.4 104756 1xw5A 217 5.25e+00 1ignA 246 5.74e+00 1ignA a.4.1.6,a.4.1.6 16048,16049 2c4jA 218 5.87e+00 1o6dA 163 8.68e+00 c.116.1.3 92567 1xhnA 184 1.22e+01 1bvqA 141 1.22e+01 1bvqA d.38.1.1 38542 1m0wA 491 1.23e+01 c.30.1.4,d.142.1.6 78363,78364 1cby 259 1.29e+01 1cby d.103.1.1 40705 1nrjA 158 1.34e+01 d.110.4.4 86124 1itwA 741 1.34e+01 c.77.1.2 76793 1lo7A 141 1.37e+01 d.38.1.1 74144 1yy7A 213 1.42e+01 2fa8A 105 1.59e+01 1exqA 154 1.94e+01 1b9dA c.55.3.2 33646 1iuhA 198 2.05e+01 d.61.1.2 83711 1n5uA 585 2.05e+01 a.126.1.1,a.126.1.1,a.126.1.1 85339,85340,85341 1iwmA 186 2.18e+01 b.125.1.2 83758 1auvA 311 2.26e+01 1auvA c.30.1.5,d.142.1.3 31723,41558 1wucA 250 2.27e+01 6gsvA 217 2.29e+01 1b8xA a.45.1.1,c.47.1.5 17633,32925 2bxkA 585 2.33e+01 1ne7A 289 2.44e+01 c.124.1.1 91833 1vcbC 160 2.48e+01 1vcbC b.3.3.1 22535 1d9tA 289 2.60e+01 1deaA 1kjnA 157 2.65e+01 c.115.1.1 72614 2bf6A 449 2.82e+01 1lm8V 160 2.88e+01 b.3.3.1 74035 1mveA 243 2.99e+01 b.29.1.2 85140 1ujxA 119 3.07e+01 b.26.1.2 99473 2carA 196 3.14e+01 1gjnA 153 3.21e+01 a.1.1.2 70191 1d8dA 377 3.29e+01 1ft1A a.118.6.1 19185 1wpbA 172 3.39e+01 1pswA 348 3.44e+01 c.87.1.7 88287 1dp4A 435 3.52e+01 1dp4A c.93.1.1 35710 1ckeA 227 3.85e+01 1ckeA c.37.1.1 31846 1irzA 64 4.09e+01 a.4.1.11 76772 1y6zA 263 4.22e+01 3ygsP 97 4.26e+01 3ygsP a.77.1.3 18435 1lmzA 187 4.28e+01 a.96.1.4 74037 2b0tA 738 4.29e+01 2a6aA 218 4.42e+01 1ois 223 4.44e+01 1a36A e.15.1.1 43267 1bm9A 122 4.73e+01 1bm9A a.4.5.7 16116 1mbmA 198 4.73e+01 b.47.1.3 78916 1cy5A 97 4.76e+01 1cy5A a.77.1.3 18430 6ldh 330 4.82e+01 3ldh c.2.1.5,d.162.1.1 30161,42128 1a0cA 438 4.83e+01 1a0cA c.1.15.3 29529 1n1jB 97 4.83e+01 a.22.1.3 79814 1yh1A 359 5.10e+01 1fohA 664 5.10e+01 1fohA c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 2fm9A 215 5.14e+01 1bx1A 314 5.20e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1lbkA 208 5.23e+01 a.45.1.1,c.47.1.5 73809,73810 2ctc 307 5.26e+01 1aye c.56.5.1 33802 1fp2A 352 5.34e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1qs0B 338 5.38e+01 1qs0B c.36.1.7,c.48.1.2 31830,33103 1elvA 333 5.39e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1zq6A 359 5.39e+01 1itg 166 5.41e+01 1b9dA c.55.3.2 33661 1f02T 66 5.60e+01 1f02T j.67.1.1 46360 1rypF 233 5.66e+01 1rypF d.153.1.4 41937 1e7aA 585 5.68e+01 1bj5 a.126.1.1,a.126.1.1,a.126.1.1 19360,19361,19362 1jsdA 319 5.78e+01 b.19.1.2 63258 1bzpA 153 5.79e+01 1a6m a.1.1.2 15020 1xyiA 66 5.80e+01 1xriA 151 5.89e+01 1sflA 238 6.05e+01 1dwtA 153 6.09e+01 1a6m a.1.1.2 15190 1jyoA 130 6.23e+01 d.198.1.1 67483 1z0kB 69 6.31e+01 1y0vH 146 6.31e+01 2g8yA 385 6.48e+01 2frfA 153 6.49e+01 1tn6A 382 6.57e+01 1m4lA 307 6.59e+01 c.56.5.1 78604 2f3yA 148 6.60e+01 1pgtA 210 6.63e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 1azpA 66 6.63e+01 1azpA b.34.13.1 37467 1ld8A 382 6.64e+01 a.118.6.1 73838 2a2rA 210 6.72e+01 1wpoA 256 6.81e+01 1lay b.57.1.1 27012 1tueA 212 6.84e+01 c.37.1.20 107323 2fyxA 143 6.90e+01 1fnd 314 6.94e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1k6kA 143 7.05e+01 a.174.1.1 77274 1z91A 147 7.11e+01 1pn0A 665 7.16e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1b7gO 340 7.24e+01 1b7gO c.2.1.3,d.81.1.1 29992,39907 2daqA 110 7.34e+01 1txkA 498 7.38e+01 b.1.18.2,b.30.5.9 107425,107426 1k87A 669 7.39e+01 a.176.1.1,c.1.23.2 77286,77287 1fnc 314 7.45e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1s1pA 331 7.46e+01 c.1.7.1 98350 1he7A 126 7.51e+01 1wwcA b.1.1.4 60970 2avyC 232 7.68e+01 1n1cA 217 7.71e+01 a.184.1.1 85254 1pd21 199 7.75e+01 1pd21 1vr4A 103 7.85e+01 1wzzA 334 7.85e+01 1o26A 232 7.85e+01 d.207.1.1 86566 1doi 128 7.90e+01 1awd d.15.4.1 37676 1nnxA 109 7.98e+01 b.40.10.1 92013 1hbkA 94 7.99e+01 1aca a.11.1.1 60887 1g4yR 148 8.00e+01 1cll a.39.1.5 60252 2g0cA 76 8.14e+01 1fkmA 396 8.17e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1ks9A 291 8.27e+01 a.100.1.7,c.2.1.6 68857,68858 1xfxO 149 8.29e+01 1a79A 171 8.32e+01 1a79A c.52.2.1,d.75.1.1 33340,39739 1hh1A 143 8.40e+01 1gefA c.52.1.18 61036 1tffA 234 8.62e+01 d.3.1.11 106854 1orsC 132 8.83e+01 f.14.1.1 87353 1wxcA 281 8.89e+01 1kdoA 227 8.98e+01 c.37.1.1 68478 1dbxA 158 8.99e+01 1dbuA d.116.1.1 40928