Best Alignments for T0346

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2bitX/T0346-2bitX-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2bitX/T0346-2bitX-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7546e-317.65e-115
1yndA/T0346-1yndA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yndA/T0346-1yndA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3613e-311.80e-113
1awqA/T0346-1awqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1awqA/T0346-1awqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.2875e-311.73e-111 2cpl b.62.1.1
1xo7A/T0346-1xo7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xo7A/T0346-1xo7A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8972e-301.56e-112
1ihgA/T0346-1ihgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ihgA/T0346-1ihgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.3641e-305.25e-111 2cpl a.118.8.1
b.62.1.1
2gw2A/T0346-2gw2A-t2k-global-adpstyle1.a2m 2gw2A/T0346-2gw2A-t2k-global-adpstyle1.al 1.5100e-293.19e-66
1zcxA/T0346-1zcxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zcxA/T0346-1zcxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0003e-297.84e-112
2cfeA/T0346-2cfeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cfeA/T0346-2cfeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.2589e-291.31e-109
1vdnA/T0346-1vdnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vdnA/T0346-1vdnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6063e-286.22e-108
1zkcA/T0346-1zkcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zkcA/T0346-1zkcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.3303e-273.42e-96

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001