# List of top-scoring protein chains for T0346.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1awqA	164	3.37e-30	2cpl	b.62.1.1	27461
1yndA	165	3.38e-30			
1cynA	178	3.48e-30	2cpl	b.62.1.1	27489
1m9eA	164	4.66e-30		b.62.1.1	84894
2alfA	164	5.60e-30			
2bitX	165	5.72e-30			
1qngA	170	9.29e-30	2cpl	b.62.1.1	27507
1dywA	173	9.97e-30	2cpl	b.62.1.1	27505
1ihgA	370	1.46e-29	2cpl	a.118.8.1,b.62.1.1	62380,62381
2gw2A	198	1.51e-29			
1qnhA	170	2.04e-29	2cpl	b.62.1.1	27508
2rmcA	182	2.06e-29	2cpl	b.62.1.1	27491
1qoiA	177	2.46e-29	2cpl	b.62.1.1	27490
1a58	177	2.77e-29	2cpl	b.62.1.1	27495
1zmfA	165	4.64e-29			
1zcxA	178	4.66e-29			
2eslA	190	4.98e-29			
1xo7A	166	7.05e-29			
1vdnA	162	9.55e-29			
2cfeA	162	1.02e-28			
1h0pA	182	1.44e-28		b.62.1.1	76450
2a2nA	176	1.92e-27			
1xyhA	161	4.56e-27			
1zkcA	197	6.03e-27			
1xwnA	174	7.31e-27			
1z81A	229	4.03e-26			
2fu0A	160	7.50e-26			
2c3bA	172	2.16e-25			
2b71A	196	5.26e-25			
1w74A	191	6.46e-25			
2nul	164	5.09e-23	2cpl	b.62.1.1	27511
1lopA	164	1.14e-22	2cpl	b.62.1.1	27510
1v9tA	166	1.57e-22		b.62.1.1	108451
1clh	166	1.60e-22	2cpl	b.62.1.1	27512
1wq5A	268	1.80e+00			
1r3nA	462	6.58e+00		c.56.5.4,d.58.19.1	96945,96946
1r43A	463	6.59e+00		c.56.5.4,d.58.19.1	96969,96970
1p6qA	129	6.97e+00		c.23.1.1	104074
1mxiA	160	6.99e+00		c.116.1.1	79646
2sil	381	8.34e+00	3sil	b.68.1.1	27543
3sil	379	8.62e+00	3sil	b.68.1.1	27542
1xc4A	268	1.04e+01			
2fug5	207	1.12e+01			
2gfhA	260	1.21e+01			
2fz5A	137	1.44e+01			
2gk3A	256	1.47e+01			
1dgnA	89	1.54e+01	1dgnA	a.77.1.3	18436
2gkwA	192	1.93e+01			
1rf3A	200	1.97e+01		b.8.1.1,h.1.2.1	104915,104916
1ufbA	127	2.05e+01		a.24.16.3	99331
1flkA	228	2.06e+01	1d0aB	b.8.1.1,h.1.2.1	23262,45469
1icpA	376	2.53e+01	1oyc	c.1.4.1	62270
1xcfA	268	2.89e+01			
1x63A	82	3.53e+01			
1x94A	191	3.83e+01		c.80.1.3	109522
1jjiA	311	3.85e+01		c.69.1.2	66766
1z2lA	423	4.04e+01			
1sr3A	136	4.05e+01		b.40.9.1	98976
1b77A	228	4.11e+01	1b77A	d.131.1.2,d.131.1.2	41362,41363
1u6lA	149	4.49e+01			
1z4vA	532	4.64e+01			
7ahlA	293	4.85e+01	7ahlA	f.6.1.1	43812
1uocA	289	4.91e+01		c.55.3.9	99686
1kfbA	268	5.05e+01		c.1.2.4	77369
1beuA	268	5.20e+01	2tysA	c.1.2.4	28574
1tjpA	268	5.21e+01			
1tcwA	99	5.28e+01	1fmb	b.50.1.1	26760
3btfI	58	5.39e+01	1bpi	g.8.1.1	44482
1fhwA	129	5.43e+01	1faoA	b.55.1.1	26977
2b4wA	315	5.50e+01			
1xdtR	79	5.60e+01	1xdtR	g.3.11.1	44296
1zx8A	136	5.69e+01			
1n83A	270	5.72e+01		a.123.1.1	80276
1ldr	43	5.93e+01	1ajj	g.12.1.1	44616
2cupA	101	6.05e+01			
1w8rA	263	6.10e+01			
1ojxA	263	6.12e+01		c.1.10.1	93164
1wikA	109	6.27e+01			
1fgyA	127	6.43e+01	1faoA	b.55.1.1	26976
1flcA	432	6.53e+01	1flcA	b.19.1.3,c.23.10.2	23837,31337
1y42X	392	6.53e+01			
1y7eA	458	6.54e+01			
1w8sA	263	6.58e+01			
1vq2A	193	7.13e+01			
1sb8A	352	7.17e+01		c.2.1.2	105410
2sam	99	7.47e+01	1fmb	b.50.1.1	26755
1tj2A	584	8.03e+01			
1vkdA	338	8.05e+01		b.67.2.4	108644
1tiwA	602	8.14e+01			
1u2bA	138	8.21e+01			
1at3A	247	8.41e+01	1at3A	b.57.1.1	27021
1yoxA	250	8.64e+01