# List of top-scoring protein chains for t06-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yndA 165 4.11e-20 2bitX 165 4.89e-20 1xo7A 166 8.17e-20 1dywA 173 9.52e-20 2cpl b.62.1.1 27505 1zcxA 178 1.54e-19 2cfeA 162 1.57e-19 2rmcA 182 2.27e-19 2cpl b.62.1.1 27491 1vdnA 162 2.33e-19 1ihgA 370 4.46e-19 2cpl a.118.8.1,b.62.1.1 62380,62381 1h0pA 182 5.38e-19 b.62.1.1 76450 2a2nA 176 2.59e-18 1zkcA 197 7.81e-18 2fu0A 160 2.36e-17 1v9tA 166 1.02e-15 b.62.1.1 108451 1lopA 164 4.15e-15 2cpl b.62.1.1 27510 1zx8A 136 4.63e-03 1m1hA 248 1.80e+00 b.114.1.1,d.58.42.1 78415,78416 1bdfA 235 2.88e+00 1bdfA d.74.3.1,d.181.1.1 39727,42602 1uscA 178 3.39e+00 b.45.1.2 99860 1xe7A 203 3.57e+00 1m2oA 768 4.14e+00 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 2b8mA 117 4.17e+00 1wu7A 434 5.14e+00 1vjvA 415 5.15e+00 d.3.1.9 108632 2gefA 217 6.10e+00 2bf6A 449 6.42e+00 1wvqA 167 6.65e+00 1n0lA 224 7.65e+00 b.1.11.1,b.7.2.1 79744,79745 1vr8A 142 7.78e+00 1pbyA 489 8.52e+00 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 2gfoA 396 8.70e+00 1lugA 259 8.78e+00 b.74.1.1 91127 1yoeA 322 9.32e+00 1sxvA 172 9.89e+00 1gteA 1025 1.10e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1mixA 206 1.15e+01 a.11.2.1,b.55.1.5 79166,79167 1pmy 123 1.18e+01 1bqk b.6.1.1 22888 1w15A 153 1.34e+01 b.7.1.2 109041 1qw9A 502 1.37e+01 b.71.1.2,c.1.8.3 96466,96467 2cy7A 396 1.47e+01 2gclA 261 1.48e+01 2aexA 346 1.50e+01 1t9fA 187 1.52e+01 b.42.6.1 106710 2gk3A 256 1.54e+01 1mxiA 160 1.56e+01 c.116.1.1 79646 1xipA 388 1.59e+01 1vioA 243 1.60e+01 d.265.1.3,d.66.1.5 100762,100763 1fljA 260 1.60e+01 2cba b.74.1.1 27954 1zoxA 113 1.66e+01 1ewnA 219 1.75e+01 1bnkA b.46.1.2 25762 1y89A 238 1.81e+01 1f0xA 571 1.87e+01 1f0xA d.58.32.2,d.145.1.1 39483,41746 1mdbA 539 1.88e+01 e.23.1.1 79008 1ewkA 490 1.88e+01 1ewkA c.93.1.1 35712 1vk6A 269 1.91e+01 d.113.1.4,d.113.1.4 100851,100852 1wsrA 375 1.94e+01 2b9wA 424 1.98e+01 1pmi 440 1.99e+01 1pmi b.82.1.3 28114 1i8dA 213 2.16e+01 b.43.4.3,b.43.4.3 61953,61954 1oa4A 222 2.34e+01 b.29.1.11 86731 1vfjA 116 2.36e+01 1q67A 231 2.44e+01 b.55.1.7 95960 1wosA 364 2.48e+01 b.44.2.1,d.250.1.1 109468,109469 1dp4A 435 2.49e+01 1dp4A c.93.1.1 35710 2foyA 260 2.55e+01 1npuA 117 2.56e+01 b.1.1.1 92038 1y0kA 209 2.57e+01 1vqvA 306 2.57e+01 1qcsA 211 2.61e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1yhfA 115 2.64e+01 1yoxA 250 2.73e+01 2gvkA 317 2.76e+01 1ej8A 140 2.76e+01 1qupA b.1.8.1 22300 1xhnA 184 2.77e+01 1wlsA 328 2.83e+01 1oktA 211 2.86e+01 a.45.1.1,c.47.1.5 93272,93273 1jdpA 441 2.94e+01 c.93.1.1 62906 1hp1A 516 2.95e+01 d.114.1.1,d.159.1.2 70976,70977 1brwA 433 2.98e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1gd1O 334 2.98e+01 1dssG c.2.1.3,d.81.1.1 29962,39877 1jndA 420 3.06e+01 c.1.8.5,d.26.3.1 71757,71758 2bibA 547 3.09e+01 2bvfA 459 3.09e+01 1zkoA 136 3.13e+01 1b5qA 472 3.18e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1dytA 133 3.30e+01 7rsa d.5.1.1 37288 2sli 679 3.30e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1nnsA 326 3.31e+01 c.88.1.1 85910 1vs0A 310 3.34e+01 1ln1A 214 3.42e+01 d.129.3.2 74038 2ab5A 269 3.43e+01 1vkbA 161 3.48e+01 d.269.1.1 108643 1em2A 229 3.49e+01 1em2A d.129.3.2 41321 1xgsA 295 3.59e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 2crvA 120 3.66e+01 2b4wA 315 3.68e+01 1h7eA 245 3.72e+01 c.68.1.13 60717 2gaxA 135 3.77e+01 1ve4A 206 3.82e+01 1e5kA 201 3.84e+01 1fr9A c.68.1.8 34578 3cla 213 3.86e+01 3cla c.43.1.1 32610 2coeA 120 3.89e+01 1yymG 313 4.05e+01 1ywmA 200 4.07e+01 1x72A 334 4.11e+01 d.126.1.6 109495 1gqvA 135 4.14e+01 d.5.1.1 70376 1f28A 297 4.19e+01 1bkpA d.117.1.1 59608 2ew0A 192 4.20e+01 1k0iA 394 4.21e+01 c.3.1.2,d.16.1.2 67942,67943 1wdnA 226 4.21e+01 1lst c.94.1.1 35816 1svb 395 4.21e+01 1svb b.1.18.4,f.10.1.1 21814,43827 2asuB 234 4.24e+01 4dpvZ 584 4.30e+01 2cas b.121.5.2 23377 1x74A 360 4.31e+01 2fbwA 621 4.32e+01 1g9gA 629 4.35e+01 a.102.1.2 83279 2ajtA 500 4.36e+01 1dz3A 130 4.39e+01 1dz3A c.23.1.1 31105 3grs 478 4.40e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1ixcA 294 4.42e+01 a.4.5.37,c.94.1.1 83764,83765 1k12A 158 4.42e+01 b.18.1.15 71978 1ef8A 261 4.48e+01 1ef8A c.14.1.3 30921 1paz 123 4.55e+01 1bqk b.6.1.1 22878 1xknA 355 4.64e+01 1h5rA 293 4.69e+01 c.68.1.6 65623 1qlpA 394 4.71e+01 1ovaA e.1.1.1 42628 1yphC 131 4.71e+01 1v93A 296 4.77e+01 c.1.23.1 100532 2axoA 270 4.77e+01 1bqk 124 4.80e+01 1bqk b.6.1.1 22889 1bqcA 302 4.83e+01 1bqcA c.1.8.3 28831 2cy5A 140 4.84e+01 2f0cA 191 4.87e+01 1j7gA 144 4.90e+01 c.110.1.1 84130 1ktbA 405 5.06e+01 b.71.1.1,c.1.8.1 72960,72961 1jkeA 145 5.13e+01 c.110.1.1 66791 1fxoA 293 5.14e+01 1g0rA c.68.1.6 34524 1jk7A 323 5.16e+01 1auiA d.159.1.3 63144 1rc9A 221 5.16e+01 1v6sA 390 5.28e+01 c.86.1.1 100424 1jljA 189 5.29e+01 c.57.1.1 63169 1r64A 481 5.38e+01 b.18.1.20,c.41.1.1 97140,97141 1j58A 385 5.39e+01 b.82.1.2 71531 1ja1A 622 5.49e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 2f20A 240 5.52e+01 1xnkA 196 5.54e+01 2bnmA 198 5.61e+01 2pii 112 5.67e+01 2pii d.58.5.1 39071 1w9sA 142 5.67e+01 2d2eA 250 5.67e+01 1vkpA 383 5.68e+01 d.126.1.6 108686 2eu9A 355 5.69e+01 2g2cA 167 5.71e+01 1evlA 401 5.75e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1tueA 212 5.75e+01 c.37.1.20 107323 1isiA 265 5.76e+01 e.4.1.1 71394 1o3yA 166 5.80e+01 c.37.1.8 86618 2b8eA 273 5.91e+01 1mxgA 435 5.91e+01 b.71.1.1,c.1.8.1 85193,85194 1ul7A 102 5.92e+01 d.129.6.1 99540 1j5wA 298 5.93e+01 d.104.1.1 71589 1ii7A 333 5.98e+01 1ii7A d.159.1.4 62415 2cxnA 557 6.00e+01 1xm7A 195 6.01e+01 1di6A 195 6.03e+01 1di6A c.57.1.1 33863 1vjhA 122 6.07e+01 d.129.3.1 100811 1jovA 270 6.15e+01 b.30.5.7 84192 1juvA 193 6.20e+01 c.71.1.1 90912 1nb8A 353 6.21e+01 d.3.1.9 80385 2bbdA 350 6.23e+01 1xkpB 124 6.26e+01 1dfmA 223 6.32e+01 1d2iA c.52.1.5 33295 1lg7A 182 6.34e+01 d.213.1.1 73888 1uj6A 227 6.43e+01 c.124.1.4,d.58.40.1 107898,107899 2gdzA 267 6.47e+01 1f9vA 347 6.48e+01 1bg2 c.37.1.9 59745 2bdwA 362 6.48e+01 1hyoA 421 6.50e+01 1qcnA b.34.8.1,d.177.1.1 59001,59002 1o7iA 119 6.51e+01 b.40.4.3 86642 1vqzA 341 6.52e+01 1im5A 180 6.58e+01 c.33.1.3 66211 1bw0A 416 6.66e+01 1bw0A c.67.1.1 34385 1yoaA 159 6.66e+01 1g5bA 221 6.67e+01 1g5bA d.159.1.3 60261 1u2zA 433 6.70e+01 c.66.1.31 107626 1lfwA 470 6.90e+01 c.56.5.4,d.58.19.1 77942,77943 1pv5A 264 6.91e+01 d.251.1.1 95150 1szwA 379 6.95e+01 d.265.1.4 99047 1h4xA 117 6.95e+01 1auz c.13.2.1 60626 1agjA 242 6.98e+01 1agjA b.47.1.1 25827 1rsy 152 7.00e+01 1rsy b.7.1.2 23192 1mr3F 181 7.02e+01 c.37.1.8 79422 1q7zA 566 7.05e+01 c.1.21.2,c.1.26.1 96090,96091 1jd0A 263 7.14e+01 2cba b.74.1.1 62888 1dl5A 317 7.18e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721 1zvnA 99 7.26e+01 1cs6A 382 7.34e+01 1cs6A b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 2arzA 247 7.37e+01 1jflA 228 7.38e+01 c.78.2.1,c.78.2.1 71656,71657 1jl0A 334 7.40e+01 1jenA d.156.1.1 63155 1gsoA 431 7.43e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 2trcP 217 7.44e+01 1b9yC c.47.1.6 33051 1qmeA 702 7.45e+01 1pmd d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 1q5fA 156 7.46e+01 d.24.1.1 104536 1n8fA 350 7.48e+01 c.1.10.4 85397 2pth 193 7.57e+01 2pth c.56.3.1 33793 1n9eA 787 7.59e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1oalA 151 7.63e+01 b.1.8.1 86739 1itbB 315 7.63e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 2et1A 201 7.67e+01 1fi2A 201 7.67e+01 1fi2A b.82.1.2 59845 1t5bA 201 7.74e+01 c.23.5.3 106433 2h1tA 188 7.76e+01 1h2wA 710 7.81e+01 b.69.7.1,c.69.1.4 76596,76597 1ntyA 311 7.81e+01 a.87.1.1,b.55.1.1 103873,103874 1sczA 233 7.81e+01 c.43.1.1 98802 1k8kD 300 7.84e+01 d.198.2.1,d.198.2.1 68309,68310 1y7mA 164 7.84e+01 1v0wA 506 7.91e+01 d.136.1.2,d.136.1.2 108220,108221 1faaA 124 7.95e+01 1erv c.47.1.1 32738 1jssA 224 7.98e+01 d.129.3.2 71844 1k38A 254 7.98e+01 e.3.1.1 84303 2fpmA 322 7.98e+01 1k8wA 327 8.05e+01 b.122.1.1,d.265.1.2 83094,90388 2g0cA 76 8.07e+01 1gmiA 136 8.10e+01 b.7.1.1 65309 1rybA 212 8.16e+01 c.56.3.1 98098 1k66A 149 8.18e+01 c.23.1.1 90941 1yqzA 438 8.26e+01 1gq6A 313 8.28e+01 c.42.1.1 70341 1ql0A 241 8.31e+01 1qaeA d.4.1.2 37139 2b0aA 186 8.35e+01 1afwA 393 8.35e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1jmxA 494 8.37e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1ir6A 424 8.46e+01 c.107.1.2 71342 1c0pA 363 8.51e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 2f9nA 245 8.51e+01 1ww8A 439 8.53e+01 1vlbA 907 8.54e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 2ai4A 119 8.62e+01 1kg0C 136 8.64e+01 d.169.1.1 72445 1wkyA 464 8.65e+01 2g5dA 422 8.66e+01 1vclA 432 8.69e+01 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1o4vA 183 8.71e+01 c.23.8.1 86628 1dg9A 157 8.74e+01 1dg9A c.44.1.1 32637 1z57A 339 8.74e+01 1rreA 200 8.76e+01 d.14.1.10 97791 1kb9B 352 8.77e+01 d.185.1.1,d.185.1.1 77313,77314 1rg8A 146 8.84e+01 2f02A 323 8.89e+01 1o22A 170 8.92e+01 d.238.1.1 86557 1wbiA 129 8.93e+01 1qr0A 228 8.98e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039