# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yndA 165 1.98e-39 1dywA 173 2.39e-39 2cpl b.62.1.1 27505 2bitX 165 3.16e-39 1ihgA 370 2.09e-38 2cpl a.118.8.1,b.62.1.1 62380,62381 2cfeA 162 2.32e-38 1zcxA 178 3.01e-38 1xo7A 166 5.72e-38 2rmcA 182 9.94e-38 2cpl b.62.1.1 27491 1vdnA 162 1.01e-37 1h0pA 182 4.00e-37 b.62.1.1 76450 2a2nA 176 1.35e-35 1zkcA 197 4.63e-35 2fu0A 160 7.28e-34 1v9tA 166 2.25e-29 b.62.1.1 108451 1lopA 164 8.94e-29 2cpl b.62.1.1 27510 1wu7A 434 7.23e-01 1zx8A 136 8.52e-01 1mxiA 160 1.37e+00 c.116.1.1 79646 1vr0A 247 1.59e+00 1pa1A 310 3.15e+00 c.45.1.2 94404 2f71A 298 3.30e+00 1y7mA 164 5.14e+00 1v0wA 506 5.95e+00 d.136.1.2,d.136.1.2 108220,108221 1umkA 275 6.08e+00 1dqiA 124 7.00e+00 1do6A b.1.13.1 22357 1wdnA 226 7.30e+00 1lst c.94.1.1 35816 1qx4A 274 7.52e+00 b.43.4.2,c.25.1.1 104624,104625 2a46A 238 7.80e+00 2cy7A 396 8.40e+00 1vfjA 116 8.90e+00 1wloA 136 8.95e+00 1evlA 401 9.33e+00 1qf6A c.51.1.1,d.104.1.1 33202,40751 1mveA 243 9.48e+00 b.29.1.2 85140 1ci9A 392 1.04e+01 e.3.1.1 64767 1vqvA 306 1.06e+01 1p42A 270 1.08e+01 d.14.1.7,d.14.1.7 87754,87755 1dz3A 130 1.09e+01 1dz3A c.23.1.1 31105 1xhnA 184 1.17e+01 1rx0A 393 1.28e+01 a.29.3.1,e.6.1.1 98007,98008 1ezwA 349 1.30e+01 1ezwA c.1.16.3 29558 1h4xA 117 1.35e+01 1auz c.13.2.1 60626 1lq9A 112 1.52e+01 d.58.4.3 78129 1wi1A 126 1.56e+01 1wriA 93 1.57e+01 1fxoA 293 1.60e+01 1g0rA c.68.1.6 34524 2gk3A 256 1.67e+01 1i6aA 219 1.68e+01 c.94.1.1 61827 2azpA 318 1.69e+01 1q0eA 152 1.73e+01 b.1.8.1 95504 1e9pA 151 1.92e+01 1mfmA b.1.8.1 22215 1ve4A 206 1.93e+01 1oxxK 353 2.12e+01 b.40.6.3,c.37.1.12 93715,93716 1erjA 393 2.21e+01 1erjA b.69.4.1 27660 1lzjA 292 2.29e+01 c.68.1.9 74352 1oa4A 222 2.31e+01 b.29.1.11 86731 1vjvA 415 2.40e+01 d.3.1.9 108632 1yoeA 322 2.42e+01 2cqsA 842 2.43e+01 1n82A 331 2.48e+01 c.1.8.3 91703 1fsgA 233 2.53e+01 1qk3A c.61.1.1 34029 2coeA 120 2.56e+01 2b8mA 117 2.65e+01 1wgkA 114 2.69e+01 2bvfA 459 2.70e+01 1fs0E 138 2.75e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1ukcA 522 2.84e+01 c.69.1.17 107911 1d5tA 433 2.86e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 1usuB 170 2.99e+01 d.83.2.1 99886 1yymG 313 2.99e+01 1f39A 101 3.00e+01 1umuA b.87.1.1 28386 2as9A 210 3.01e+01 1ntyA 311 3.11e+01 a.87.1.1,b.55.1.1 103873,103874 1qcsA 211 3.13e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1zoxA 113 3.17e+01 1q1oA 98 3.18e+01 d.15.2.2 95596 1o7iA 119 3.27e+01 b.40.4.3 86642 1qlpA 394 3.34e+01 1ovaA e.1.1.1 42628 1vi2A 300 3.35e+01 c.2.1.7,c.58.1.5 100726,100727 1ww9A 392 3.37e+01 1vyrA 364 3.40e+01 c.1.4.1 108906 2cy5A 140 3.46e+01 2gefA 217 3.48e+01 2gclA 261 3.61e+01 1fonA 240 3.64e+01 5ptp b.47.1.2 26231 1khbA 625 3.67e+01 c.91.1.1,c.109.1.1 68606,68607 1lnsA 763 3.69e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1vi6A 208 3.71e+01 c.23.15.1 100736 1h5rA 293 3.75e+01 c.68.1.6 65623 1wchA 315 3.83e+01 4ubpC 570 3.86e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 1s8nA 205 3.91e+01 c.23.1.1 105374 1nb8A 353 3.92e+01 d.3.1.9 80385 1h7sA 365 3.94e+01 d.14.1.3,d.122.1.2 65705,65706 1u2cA 246 4.10e+01 b.1.6.2,d.272.1.1 107610,107611 2givA 295 4.11e+01 1rg8A 146 4.24e+01 1sxvA 172 4.27e+01 1idpA 172 4.31e+01 d.17.4.1 83685 1fjgE 162 4.35e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 2dd8S 202 4.35e+01 1xiwA 105 4.35e+01 1lam 484 4.41e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1o9wA 177 4.43e+01 b.2.3.5 86713 2ex4A 241 4.45e+01 1a70 97 4.53e+01 1awd d.15.4.1 37678 1yzxA 226 4.73e+01 1vkdA 338 4.88e+01 b.67.2.4 108644 1j58A 385 4.91e+01 b.82.1.2 71531 1us5A 314 4.94e+01 c.94.1.1 99856 1sr4B 261 5.05e+01 d.151.1.1 105949 1cliA 345 5.07e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1f20A 435 5.08e+01 b.43.4.1,c.25.1.4 64932,64933 1qe3A 489 5.11e+01 2bce c.69.1.1 34630 1zk5A 176 5.28e+01 1u5uA 374 5.29e+01 2gvkA 317 5.30e+01 1vjhA 122 5.59e+01 d.129.3.1 100811 1ewnA 219 5.64e+01 1bnkA b.46.1.2 25762 1odkA 235 5.79e+01 c.56.2.1 86863 1vpjA 192 5.85e+01 1to4A 156 6.03e+01 b.1.8.1 107162 1rifA 282 6.08e+01 c.37.1.23 97507 1w5fA 353 6.10e+01 1sq2N 113 6.11e+01 b.1.1.1 105881 1hyvA 166 6.21e+01 1b9dA c.55.3.2 61424 1rloA 271 6.22e+01 2bo9B 222 6.22e+01 1ogsA 497 6.25e+01 b.71.1.2,c.1.8.3 86997,86998 1b77A 228 6.26e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1qwgA 251 6.47e+01 c.1.27.1 96473 1jfbA 404 6.48e+01 a.104.1.1 66624 2bw2A 140 6.49e+01 2fomB 185 6.73e+01 1yphE 97 6.73e+01 1sgwA 214 6.85e+01 c.37.1.12 105541 2calA 154 6.86e+01 1bcpB 199 6.86e+01 1bcpB b.40.2.1,d.169.1.2 25120,42429 1k66A 149 6.91e+01 c.23.1.1 90941 1ww8A 439 6.92e+01 1xewX 182 7.05e+01 2pii 112 7.09e+01 2pii d.58.5.1 39071 1cr5A 189 7.10e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1gteA 1025 7.12e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1ydlA 79 7.14e+01 1x9uA 116 7.16e+01 2trxA 108 7.21e+01 1thx c.47.1.1 32719 1t94A 459 7.21e+01 d.240.1.1,e.8.1.7 106701,106702 1vqoD 177 7.24e+01 1exqA 154 7.30e+01 1b9dA c.55.3.2 33646 1bfg 146 7.35e+01 1bfg b.42.1.1 25485 1e30A 155 7.43e+01 1rcy b.6.1.1 23016 1qreA 247 7.43e+01 1qreA b.81.1.5 28066 1yqtA 538 7.46e+01 1nnsA 326 7.46e+01 c.88.1.1 85910 1ogwA 76 7.47e+01 d.15.1.1 87001 1xwwA 157 7.58e+01 1tuwA 109 7.73e+01 d.58.4.8 107346 1gqvA 135 7.76e+01 d.5.1.1 70376 1vlaA 150 7.78e+01 d.227.1.2 108735 1vf7A 369 7.79e+01 f.46.1.1 108557 1pbyB 337 7.86e+01 b.69.2.2 94422 1t2bA 397 7.87e+01 1ywmA 200 7.89e+01 1z4vA 532 7.92e+01 1a8s 273 7.92e+01 1brt c.69.1.12 34710 1z6fA 363 7.98e+01 1ocyA 198 8.01e+01 d.231.1.1 86817 2cb2A 318 8.03e+01 2b9wA 424 8.09e+01 1s2oA 244 8.20e+01 1oaoC 729 8.28e+01 e.26.1.3 86746 1rypI 222 8.32e+01 d.153.1.4 41877 2gdzA 267 8.46e+01 1zoiA 276 8.58e+01 1zdrA 164 8.71e+01 1m40A 263 8.89e+01 e.3.1.1 74437 1w2wB 191 8.99e+01