# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bitX 165 1.20e-34 1yndA 165 1.69e-34 1dywA 173 1.99e-34 2cpl b.62.1.1 27505 1ihgA 370 2.60e-34 2cpl a.118.8.1,b.62.1.1 62380,62381 1xo7A 166 5.28e-34 1zcxA 178 6.33e-34 2rmcA 182 1.12e-33 2cpl b.62.1.1 27491 2cfeA 162 1.85e-33 1vdnA 162 3.02e-33 1h0pA 182 8.63e-33 b.62.1.1 76450 2a2nA 176 1.22e-31 1zkcA 197 2.04e-31 2fu0A 160 5.30e-30 1v9tA 166 1.08e-26 b.62.1.1 108451 1lopA 164 7.21e-26 2cpl b.62.1.1 27510 1zx8A 136 2.47e-01 1gteA 1025 1.50e+00 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1wu7A 434 1.79e+00 2cy7A 396 1.88e+00 1ewnA 219 2.14e+00 1bnkA b.46.1.2 25762 1vr0A 247 2.30e+00 1vqvA 306 2.84e+00 1y7mA 164 3.54e+00 1mxiA 160 3.64e+00 c.116.1.1 79646 2gvkA 317 4.13e+00 1o04A 500 4.33e+00 c.82.1.1 86508 1qcsA 211 4.64e+00 1qcsA b.52.2.3,d.31.1.1 26927,38461 1lq9A 112 4.73e+00 d.58.4.3 78129 1evlA 401 4.75e+00 1qf6A c.51.1.1,d.104.1.1 33202,40751 2bvfA 459 5.54e+00 1ezwA 349 6.01e+00 1ezwA c.1.16.3 29558 1oa4A 222 6.43e+00 b.29.1.11 86731 1wloA 136 6.99e+00 1cr5A 189 7.29e+00 1cr5A b.52.2.3,d.31.1.1 26931,38465 2ex4A 241 7.33e+00 1fsgA 233 8.46e+00 1qk3A c.61.1.1 34029 1wdnA 226 8.96e+00 1lst c.94.1.1 35816 2b8mA 117 8.96e+00 1z4vA 532 1.04e+01 1wriA 93 1.05e+01 1v0wA 506 1.05e+01 d.136.1.2,d.136.1.2 108220,108221 1c4rA 182 1.05e+01 1c4rA b.29.1.4 24229 1khbA 625 1.06e+01 c.91.1.1,c.109.1.1 68606,68607 1vfjA 116 1.10e+01 1qlpA 394 1.12e+01 1ovaA e.1.1.1 42628 1ux6A 350 1.15e+01 b.29.1.16,g.75.1.1 100145,100146 1dz3A 130 1.23e+01 1dz3A c.23.1.1 31105 1xwwA 157 1.32e+01 1ve4A 206 1.38e+01 1dqiA 124 1.41e+01 1do6A b.1.13.1 22357 2gk3A 256 1.43e+01 1xewX 182 1.45e+01 1umkA 275 1.51e+01 1qx4A 274 1.54e+01 b.43.4.2,c.25.1.1 104624,104625 1dg9A 157 1.58e+01 1dg9A c.44.1.1 32637 1fjgE 162 1.58e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 2f71A 298 1.59e+01 1p42A 270 1.68e+01 d.14.1.7,d.14.1.7 87754,87755 2azpA 318 1.68e+01 1pa1A 310 1.84e+01 c.45.1.2 94404 1vi6A 208 1.97e+01 c.23.15.1 100736 1v9sA 208 2.00e+01 1q1oA 98 2.01e+01 d.15.2.2 95596 1wi1A 126 2.02e+01 1fxoA 293 2.02e+01 1g0rA c.68.1.6 34524 2fomB 185 2.04e+01 1b77A 228 2.08e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1bed 181 2.08e+01 1fvkA c.47.1.13 90330 2a46A 238 2.16e+01 1o7iA 119 2.18e+01 b.40.4.3 86642 1h5rA 293 2.18e+01 c.68.1.6 65623 2bdrA 175 2.20e+01 2fpqA 444 2.22e+01 1zq9A 285 2.23e+01 1zoxA 113 2.26e+01 4ubpC 570 2.39e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 1yqtA 538 2.53e+01 1k87A 669 2.58e+01 a.176.1.1,c.1.23.2 77286,77287 2bm3A 166 2.67e+01 1vi2A 300 2.70e+01 c.2.1.7,c.58.1.5 100726,100727 1hdoA 206 2.71e+01 1he2A c.2.1.2 60965 1sq2N 113 2.78e+01 b.1.1.1 105881 1ww9A 392 2.82e+01 2cqsA 842 2.83e+01 1q0eA 152 2.85e+01 b.1.8.1 95504 1bdfA 235 2.93e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1mveA 243 3.03e+01 b.29.1.2 85140 2cb2A 318 3.07e+01 2bf6A 449 3.07e+01 1tuwA 109 3.08e+01 d.58.4.8 107346 2cy5A 140 3.09e+01 1k66A 149 3.10e+01 c.23.1.1 90941 1wlsA 328 3.25e+01 1mgrA 99 3.27e+01 d.1.1.2 79106 1yymG 313 3.43e+01 2gefA 217 3.47e+01 1thfD 253 3.55e+01 1thfD c.1.2.1 28535 1e1oA 504 3.56e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 1m40A 263 3.58e+01 e.3.1.1 74437 1s8nA 205 3.59e+01 c.23.1.1 105374 1vjvA 415 3.64e+01 d.3.1.9 108632 830cA 168 3.71e+01 1ck7A d.92.1.11 40400 2bw2A 140 3.72e+01 1ja1A 622 3.72e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1a70 97 3.80e+01 1awd d.15.4.1 37678 1m6pA 152 3.83e+01 1m6pA b.64.1.1 27519 1yzxA 226 3.85e+01 1i6aA 219 3.85e+01 c.94.1.1 61827 2gclA 261 3.88e+01 1fs0E 138 3.96e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1j58A 385 4.09e+01 b.82.1.2 71531 1d5tA 433 4.19e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 1e9pA 151 4.29e+01 1mfmA b.1.8.1 22215 1ukcA 522 4.32e+01 c.69.1.17 107911 1u2cA 246 4.37e+01 b.1.6.2,d.272.1.1 107610,107611 1acf 125 4.39e+01 3nul d.110.1.1 40882 1dkiA 371 4.40e+01 1dkiA d.3.1.1 37090 3il8 72 4.45e+01 1tvxA d.9.1.1 37356 1zdrA 164 4.47e+01 1lf7A 182 4.47e+01 b.60.1.1 73878 1yoxA 250 4.48e+01 2b8tA 223 4.55e+01 1h4xA 117 4.58e+01 1auz c.13.2.1 60626 2coeA 120 4.62e+01 1y7bA 542 4.65e+01 1bcpB 199 4.68e+01 1bcpB b.40.2.1,d.169.1.2 25120,42429 1ogwA 76 4.68e+01 d.15.1.1 87001 1c96A 753 4.70e+01 1amj c.8.2.1,c.83.1.1 30727,35403 1lam 484 4.88e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1vqoD 177 4.89e+01 1jbeA 128 4.97e+01 3chy c.23.1.1 62845 1i3cA 149 5.01e+01 c.23.1.1 71112 1oaoC 729 5.12e+01 e.26.1.3 86746 1e5kA 201 5.16e+01 1fr9A c.68.1.8 34578 2ew0A 192 5.18e+01 1ve2A 235 5.27e+01 1v8hA 107 5.34e+01 1f20A 435 5.38e+01 b.43.4.1,c.25.1.4 64932,64933 1yr1A 119 5.39e+01 1idpA 172 5.44e+01 d.17.4.1 83685 1rg8A 146 5.49e+01 1vkdA 338 5.53e+01 b.67.2.4 108644 1oxxK 353 5.55e+01 b.40.6.3,c.37.1.12 93715,93716 1b5qA 472 5.55e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1qwgA 251 5.56e+01 c.1.27.1 96473 1erjA 393 5.56e+01 1erjA b.69.4.1 27660 1wchA 315 5.63e+01 1bfg 146 5.63e+01 1bfg b.42.1.1 25485 1h7sA 365 5.65e+01 d.14.1.3,d.122.1.2 65705,65706 1exqA 154 5.68e+01 1b9dA c.55.3.2 33646 1vyrA 364 5.76e+01 c.1.4.1 108906 1s2oA 244 5.78e+01 1xhnA 184 5.79e+01 1xxaA 78 5.87e+01 1xxaA d.74.2.1 39700 1cliA 345 5.95e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1g291 372 6.00e+01 1g291 1sxrA 183 6.01e+01 d.118.1.1 106101 1f39A 101 6.02e+01 1umuA b.87.1.1 28386 1t64A 377 6.06e+01 c.42.1.2 106543 1lugA 259 6.11e+01 b.74.1.1 91127 1uunA 184 6.12e+01 f.6.1.2 100012 1lzlA 323 6.17e+01 c.69.1.2 78306 1o26A 232 6.18e+01 d.207.1.1 86566 1w2xA 758 6.19e+01 c.14.1.4,c.14.1.4 109134,109135 2crvA 120 6.23e+01 2c0rA 362 6.30e+01 1t94A 459 6.35e+01 d.240.1.1,e.8.1.7 106701,106702 1o9wA 177 6.38e+01 b.2.3.5 86713 1u0sY 118 6.39e+01 c.23.1.1 107566 1tmy 120 6.47e+01 1dbwA c.23.1.1 31083 1mdbA 539 6.54e+01 e.23.1.1 79008 1gsoA 431 6.57e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1zoiA 276 6.68e+01 1vjhA 122 6.69e+01 d.129.3.1 100811 1lqtA 456 6.73e+01 c.3.1.1,c.4.1.1 74198,74199 2aexA 346 6.80e+01 1ncwH 222 6.89e+01 b.1.1.1,b.1.1.2 85555,85556 1v25A 541 6.96e+01 e.23.1.1 108275 1sxvA 172 7.05e+01 1wisA 124 7.09e+01 2f91A 237 7.19e+01 1v93A 296 7.22e+01 c.1.23.1 100532 1vjpA 394 7.36e+01 c.2.1.3,d.81.1.3 100828,100829 1p2hA 571 7.37e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1tl2A 236 7.39e+01 1tl2A b.67.1.1 27541 1rc9A 221 7.56e+01 1yoeA 322 7.64e+01 1pbyA 489 7.66e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 2bsyA 278 7.68e+01 1ww8A 439 7.80e+01 1t3qB 788 7.82e+01 d.41.1.1,d.133.1.1 106369,106370 2b0aA 186 7.84e+01 3prn 289 7.86e+01 3prn f.4.3.1 43761 1ywmA 200 7.91e+01 1to4A 156 7.93e+01 b.1.8.1 107162 1rx0A 393 7.94e+01 a.29.3.1,e.6.1.1 98007,98008 1ul7A 102 8.03e+01 d.129.6.1 99540 1rifA 282 8.05e+01 c.37.1.23 97507 1t0fA 276 8.08e+01 1sqkB 25 8.09e+01 j.86.1.1 105924 1p9yA 121 8.12e+01 d.241.2.1 94402 1atg 231 8.14e+01 1atg c.94.1.1 35834 1t5rA 284 8.16e+01 f.6.1.1 106465 1uxy 340 8.21e+01 2mbr d.145.1.2,d.146.1.1 41748,41761 1npuA 117 8.26e+01 b.1.1.1 92038 2avtA 378 8.29e+01 1ydlA 79 8.40e+01 2fbwA 621 8.43e+01 1rloA 271 8.46e+01 1yj1A 76 8.52e+01 1qwyA 291 8.56e+01 b.84.3.2 96509 1jyoA 130 8.70e+01 d.198.1.1 67483 1sr4B 261 8.75e+01 d.151.1.1 105949 1wsrA 375 8.76e+01 1lnsA 763 8.78e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1nf3A 195 8.83e+01 c.37.1.8 85594 1hyvA 166 8.99e+01 1b9dA c.55.3.2 61424