# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cpl 165 1.22e-35 2cpl b.62.1.1 27420 1yndA 165 1.48e-35 1awsA 164 1.61e-35 2cpl b.62.1.1 27431 2bitX 165 1.96e-35 1awqA 164 3.35e-35 2cpl b.62.1.1 27461 1dywA 173 7.55e-35 2cpl b.62.1.1 27505 1xo7A 166 1.69e-34 1zcxA 178 1.84e-34 2rmcA 182 2.06e-34 2cpl b.62.1.1 27491 1a58 177 2.12e-34 2cpl b.62.1.1 27495 2cfeA 162 2.27e-34 1ihgA 370 2.76e-34 2cpl a.118.8.1,b.62.1.1 62380,62381 1qoiA 177 3.28e-34 2cpl b.62.1.1 27490 1vdnA 162 9.27e-34 1h0pA 182 4.18e-33 b.62.1.1 76450 2a2nA 176 1.00e-31 1zkcA 197 1.78e-31 1xwnA 174 5.31e-31 2b71A 196 2.21e-30 2fu0A 160 4.22e-30 1lopA 164 2.89e-27 2cpl b.62.1.1 27510 1v9tA 166 3.50e-27 b.62.1.1 108451 1j2aA 166 6.35e-27 b.62.1.1 90779 1zx8A 136 1.16e+00 1dgnA 89 2.13e+00 1dgnA a.77.1.3 18436 1q45A 391 2.57e+00 c.1.4.1 95780 1icpA 376 3.29e+00 1oyc c.1.4.1 62270 1vqvA 306 4.07e+00 1o26A 232 4.07e+00 d.207.1.1 86566 1mxiA 160 4.08e+00 c.116.1.1 79646 2b4wA 315 8.73e+00 2gcuA 245 8.77e+00 1yoxA 250 9.94e+00 1qmpA 130 1.01e+01 1dz3A c.23.1.1 31106 1ufbA 127 1.09e+01 a.24.16.3 99331 1mdbA 539 1.22e+01 e.23.1.1 79008 1vjvA 415 1.25e+01 d.3.1.9 108632 1dz3A 130 1.31e+01 1dz3A c.23.1.1 31105 1pg6A 243 1.52e+01 b.82.5.2 94673 1zroA 602 1.59e+01 2fug5 207 1.62e+01 1gggA 226 1.82e+01 1lst c.94.1.1 35817 2masA 314 1.84e+01 2masA c.70.1.1 34810 1heiA 451 2.02e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 1ml4A 308 2.27e+01 c.78.1.1,c.78.1.1 79255,79256 1oktA 211 2.38e+01 a.45.1.1,c.47.1.5 93272,93273 1i6iA 366 2.50e+01 1bg2 c.37.1.9 61844 1k66A 149 2.97e+01 c.23.1.1 90941 1b1cA 181 3.05e+01 1amoA c.23.5.2 31212 1tmy 120 3.19e+01 1dbwA c.23.1.1 31083 2fdiA 211 3.22e+01 1dbgA 506 3.43e+01 1dbgA b.80.1.4 28033 1g8iA 190 3.57e+01 1rec a.39.1.5 60363 1dboA 506 3.59e+01 1dbgA b.80.1.4 28034 1wi1A 126 3.73e+01 1fj2A 232 3.78e+01 1auoA c.69.1.14 34720 1m3iA 471 3.88e+01 f.9.1.1 91178 1r3sA 367 3.88e+01 c.1.22.1 96963 1vyrA 364 3.90e+01 c.1.4.1 108906 2gk3A 256 4.04e+01 1vr0A 247 4.04e+01 1c4rA 182 4.15e+01 1c4rA b.29.1.4 24229 2dd8S 202 4.25e+01 1vkcA 158 4.32e+01 2a1kA 233 4.34e+01 1o04A 500 4.34e+01 c.82.1.1 86508 2abbA 364 4.38e+01 1oflA 481 4.41e+01 b.80.1.4 103934 1uroA 367 4.55e+01 1uroA c.1.22.1 29675 1h61A 364 4.61e+01 1oyc c.1.4.1 60657 1ituA 369 4.64e+01 c.1.9.7 71423 1gvoA 364 4.65e+01 c.1.4.1 76357 1vypX 364 4.96e+01 c.1.4.1 108905 1rx0A 393 4.97e+01 a.29.3.1,e.6.1.1 98007,98008 1z2lA 423 5.02e+01 1pswA 348 5.16e+01 c.87.1.7 88287 2aeuA 374 5.17e+01 1ukcA 522 5.17e+01 c.69.1.17 107911 1rypL 212 5.19e+01 d.153.1.4 41880 1u8xX 472 5.22e+01 c.2.1.5,d.162.1.2 107741,107742 2aawA 222 5.42e+01 1cbjA 151 5.42e+01 1mfmA b.1.8.1 22213 2bdrA 175 5.43e+01 1c8zA 265 5.51e+01 1c8zA d.23.1.1 38375 1zirA 173 5.55e+01 1sxvA 172 5.75e+01 1kzqA 289 5.75e+01 b.6.2.1,b.6.2.1 73374,73375 1e5kA 201 5.81e+01 1fr9A c.68.1.8 34578 1h7sA 365 6.01e+01 d.14.1.3,d.122.1.2 65705,65706 1pfo 500 6.07e+01 1pfo f.9.1.1 43826 1sqsA 242 6.21e+01 c.23.5.5 98968 1okiA 210 6.24e+01 b.11.1.1,b.11.1.1 93255,93256 2c1gA 431 6.25e+01 1qv9A 283 6.26e+01 c.127.1.1 96356 2fx0A 201 6.38e+01 1kbvA 327 6.42e+01 b.6.1.3,b.6.1.3 68395,68396 1x24A 180 6.56e+01 2c1iA 431 6.58e+01 1pm3A 78 6.72e+01 b.41.1.2 94889 1aa8A 347 6.74e+01 1an9A 1n4qB 377 6.93e+01 a.102.4.3 91636 1tidB 119 7.05e+01 c.13.2.1 107000 1u6dX 308 7.15e+01 1s8nA 205 7.29e+01 c.23.1.1 105374 1zgkA 308 7.44e+01 1e9pA 151 7.48e+01 1mfmA b.1.8.1 22215 1rypI 222 7.62e+01 d.153.1.4 41877 1mu5A 471 7.71e+01 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1y791 680 7.76e+01 1jk7A 323 7.78e+01 1auiA d.159.1.3 63144 1zoxA 113 7.83e+01 1xvxA 312 7.86e+01 1j9yA 385 7.94e+01 1j9yA c.1.8.3 62791 1o86A 589 7.96e+01 d.92.1.5 81177 2fug7 129 7.98e+01 1xdwA 331 8.17e+01 1zs9A 261 8.28e+01 1nif 340 8.41e+01 1nif b.6.1.3,b.6.1.3 23048,23049 1m0uA 249 8.47e+01 a.45.1.1,c.47.1.5 78359,78360 2eveA 157 8.50e+01 2bw4A 340 8.54e+01 2madH 373 8.55e+01 2bbkH b.69.2.1 27639 1dqwA 267 8.56e+01 1dqwA c.1.2.3 28551 2hlcA 230 8.86e+01 5ptp b.47.1.2 26074 1tllA 688 8.87e+01 b.43.4.1,c.23.5.2,c.25.1.4 107128,107129,107130 2bf6A 449 8.97e+01