# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bitX 165 1.29e-38 1awsA 164 2.66e-38 2cpl b.62.1.1 27431 1awqA 164 2.78e-38 2cpl b.62.1.1 27461 2cpl 165 3.53e-38 2cpl b.62.1.1 27420 1yndA 165 4.25e-38 1ihgA 370 7.57e-38 2cpl a.118.8.1,b.62.1.1 62380,62381 1a58 177 8.04e-38 2cpl b.62.1.1 27495 1dywA 173 8.90e-38 2cpl b.62.1.1 27505 1zcxA 178 2.79e-37 1xo7A 166 1.01e-36 1vdnA 162 1.29e-36 2rmcA 182 1.30e-36 2cpl b.62.1.1 27491 2cfeA 162 1.48e-36 1qoiA 177 3.41e-36 2cpl b.62.1.1 27490 1h0pA 182 2.68e-35 b.62.1.1 76450 2a2nA 176 6.94e-34 1zkcA 197 1.17e-33 1xwnA 174 8.44e-33 2b71A 196 4.40e-32 2fu0A 160 4.59e-32 1j2aA 166 1.91e-29 b.62.1.1 90779 1v9tA 166 2.99e-29 b.62.1.1 108451 1lopA 164 1.54e-28 2cpl b.62.1.1 27510 1zx8A 136 9.14e-02 1wu7A 434 4.83e-01 1g7fA 298 8.88e-01 1pty c.45.1.2 60330 1gggA 226 1.76e+00 1lst c.94.1.1 35817 2f71A 298 2.23e+00 1xhnA 184 2.42e+00 1mxiA 160 2.96e+00 c.116.1.1 79646 1vqvA 306 3.27e+00 1vr0A 247 3.74e+00 1qwgA 251 3.88e+00 c.1.27.1 96473 1ptvA 321 3.93e+00 1pty c.45.1.2 32665 1pa1A 310 3.95e+00 c.45.1.2 94404 1wdnA 226 4.28e+00 1lst c.94.1.1 35816 1o04A 500 4.92e+00 c.82.1.1 86508 2gclA 261 5.22e+00 1qmpA 130 6.50e+00 1dz3A c.23.1.1 31106 1wriA 93 8.27e+00 2cy7A 396 8.67e+00 1dz3A 130 9.43e+00 1dz3A c.23.1.1 31105 1do6A 124 9.86e+00 1do6A b.1.13.1 22361 1k87A 669 1.03e+01 a.176.1.1,c.1.23.2 77286,77287 1dqiA 124 1.20e+01 1do6A b.1.13.1 22357 1vqoD 177 1.67e+01 2gk3A 256 1.74e+01 1b77A 228 1.75e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1v4vA 376 1.77e+01 c.87.1.3 100313 1vjvA 415 1.77e+01 d.3.1.9 108632 1mdbA 539 1.78e+01 e.23.1.1 79008 1a8s 273 1.81e+01 1brt c.69.1.12 34710 2as9A 210 1.89e+01 1c4rA 182 1.93e+01 1c4rA b.29.1.4 24229 1f0iA 504 2.09e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 1wchA 315 2.09e+01 1v0wA 506 2.14e+01 d.136.1.2,d.136.1.2 108220,108221 1vi2A 300 2.20e+01 c.2.1.7,c.58.1.5 100726,100727 2bf6A 449 2.40e+01 1tllA 688 2.46e+01 b.43.4.1,c.23.5.2,c.25.1.4 107128,107129,107130 1wggA 96 2.52e+01 1h7sA 365 2.54e+01 d.14.1.3,d.122.1.2 65705,65706 1x3lA 440 2.57e+01 1tmy 120 2.61e+01 1dbwA c.23.1.1 31083 1u0sY 118 2.64e+01 c.23.1.1 107566 1zoiA 276 2.71e+01 1sq2N 113 2.77e+01 b.1.1.1 105881 1frrA 95 2.81e+01 1awd d.15.4.1 37674 1cbjA 151 2.84e+01 1mfmA b.1.8.1 22213 1lam 484 2.86e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1s8nA 205 2.88e+01 c.23.1.1 105374 1a70 97 2.98e+01 1awd d.15.4.1 37678 1e9pA 151 3.07e+01 1mfmA b.1.8.1 22215 1qcsA 211 3.31e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1q0eA 152 3.34e+01 b.1.8.1 95504 2bh9A 489 3.39e+01 1y7mA 164 3.44e+01 1vl4A 447 3.44e+01 d.283.1.1 108718 2ex4A 241 3.55e+01 2b0aA 186 3.63e+01 1pjcA 361 3.64e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1fs0E 138 3.84e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 2b8mA 117 3.89e+01 2b7yA 182 3.89e+01 1j58A 385 3.94e+01 b.82.1.2 71531 1u69A 163 3.97e+01 d.32.1.7 107699 1rc9A 221 3.98e+01 1sr4B 261 4.00e+01 d.151.1.1 105949 1v9sA 208 4.01e+01 1yymG 313 4.14e+01 1khbA 625 4.23e+01 c.91.1.1,c.109.1.1 68606,68607 2aaa 484 4.27e+01 7taa b.71.1.1,c.1.8.1 27777,28764 1l1jA 239 4.29e+01 b.47.1.1 84516 1d7yA 408 4.30e+01 1d7yA c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1usuB 170 4.32e+01 d.83.2.1 99886 1xeaA 323 4.34e+01 c.2.1.3,d.81.1.5 109572,109573 1h4xA 117 4.41e+01 1auz c.13.2.1 60626 1ve4A 206 4.44e+01 1o26A 232 4.48e+01 d.207.1.1 86566 1o5oA 221 4.49e+01 c.61.1.1 92509 1m3iA 471 4.57e+01 f.9.1.1 91178 1oalA 151 4.65e+01 b.1.8.1 86739 1r64A 481 4.72e+01 b.18.1.20,c.41.1.1 97140,97141 1erjA 393 4.73e+01 1erjA b.69.4.1 27660 1ntyA 311 4.92e+01 a.87.1.1,b.55.1.1 103873,103874 1ojrA 274 4.93e+01 c.74.1.1 93147 1x36A 237 4.94e+01 2calA 154 5.00e+01 1q1oA 98 5.14e+01 d.15.2.2 95596 1e30A 155 5.16e+01 1rcy b.6.1.1 23016 1wi1A 126 5.16e+01 2coeA 120 5.25e+01 1ww9A 392 5.26e+01 1wloA 136 5.39e+01 1dkiA 371 5.43e+01 1dkiA d.3.1.1 37090 1z4vA 532 5.71e+01 1a04A 215 5.77e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 1crzA 403 5.93e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1f20A 435 5.95e+01 b.43.4.1,c.25.1.4 64932,64933 1vi6A 208 6.00e+01 c.23.15.1 100736 2a46A 238 6.11e+01 1z4xA 532 6.12e+01 1i12A 160 6.33e+01 1i21A d.108.1.1 61515 1lylA 504 6.41e+01 1lylA b.40.4.1,d.104.1.1 25261,40717 1lq9A 112 6.45e+01 d.58.4.3 78129 1i1dA 161 6.45e+01 1i21A d.108.1.1 61526 1yr1A 119 6.46e+01 1us5A 314 6.56e+01 c.94.1.1 99856 1mveA 243 6.60e+01 b.29.1.2 85140 1zoxA 113 6.65e+01 1ewnA 219 6.67e+01 1bnkA b.46.1.2 25762 2cy5A 140 6.72e+01 2bdrA 175 6.73e+01 1tyv 542 6.83e+01 1tyv b.80.1.6 28038 1y7bA 542 6.88e+01 1h7wA 1025 6.93e+01 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1m6iA 493 6.95e+01 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1bl3A 160 7.03e+01 1b9dA c.55.3.2 33655 1evlA 401 7.09e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1r4wA 226 7.11e+01 c.47.1.13 97050 2gvkA 317 7.15e+01 1qlpA 394 7.17e+01 1ovaA e.1.1.1 42628 1pfo 500 7.26e+01 1pfo f.9.1.1 43826 1vfjA 116 7.34e+01 1o9wA 177 7.37e+01 b.2.3.5 86713 2b49A 287 7.46e+01 1uliB 187 7.50e+01 d.17.4.4 107923 1eb7A 323 7.61e+01 1eb7A a.3.1.5,a.3.1.5 59404,59405 1gteA 1025 7.73e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2fftA 84 7.77e+01 1h5rA 293 7.86e+01 c.68.1.6 65623 1fjgC 239 7.90e+01 1fjfC d.52.3.1,d.53.1.1 38831,38839 1v3rA 116 7.95e+01 1y8cA 246 8.17e+01 1a7i 81 8.20e+01 1b8tA g.39.1.3,g.39.1.3 45143,45144 1umkA 275 8.27e+01 1q5fA 156 8.29e+01 d.24.1.1 104536 1op4A 159 8.35e+01 b.1.6.1 93397 1lb6A 160 8.51e+01 b.8.1.1 73798 1xvxA 312 8.55e+01 1vl6A 388 8.64e+01 c.2.1.7,c.58.1.3 108724,108725 1lehA 364 8.72e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1zoyA 622 8.76e+01 1smvA 260 8.80e+01 1smvA b.121.4.7 23288 1u8sA 192 8.87e+01 d.58.18.5,d.58.18.5 107737,107738 1df7A 159 8.91e+01 3dfr c.71.1.1 34885 1nszA 347 8.94e+01 b.30.5.4 80724