# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bitX 165 5.04e-35 2cpl 165 7.06e-35 2cpl b.62.1.1 27420 1a58 177 7.46e-35 2cpl b.62.1.1 27495 1awqA 164 9.52e-35 2cpl b.62.1.1 27461 1yndA 165 9.75e-35 1ihgA 370 1.05e-34 2cpl a.118.8.1,b.62.1.1 62380,62381 1awsA 164 1.12e-34 2cpl b.62.1.1 27431 1dywA 173 1.24e-34 2cpl b.62.1.1 27505 2rmcA 182 3.91e-34 2cpl b.62.1.1 27491 1xo7A 166 4.00e-34 1zcxA 178 4.60e-34 2cfeA 162 8.48e-34 1qoiA 177 1.24e-33 2cpl b.62.1.1 27490 1vdnA 162 1.72e-33 1h0pA 182 1.11e-32 b.62.1.1 76450 2a2nA 176 2.37e-31 1zkcA 197 2.39e-31 2b71A 196 3.85e-30 1xwnA 174 4.71e-30 2fu0A 160 9.93e-30 1j2aA 166 6.60e-28 b.62.1.1 90779 1v9tA 166 3.56e-27 b.62.1.1 108451 1lopA 164 1.38e-26 2cpl b.62.1.1 27510 1wu7A 434 1.48e+00 1qwgA 251 1.59e+00 c.1.27.1 96473 1vr0A 247 1.63e+00 1zx8A 136 1.65e+00 1gggA 226 2.64e+00 1lst c.94.1.1 35817 2cy7A 396 2.83e+00 1mxiA 160 3.25e+00 c.116.1.1 79646 2bh9A 489 3.50e+00 1o04A 500 3.65e+00 c.82.1.1 86508 1vqvA 306 4.25e+00 2bf6A 449 4.34e+00 1xhnA 184 5.47e+00 1qcsA 211 6.09e+00 1qcsA b.52.2.3,d.31.1.1 26927,38461 1gteA 1025 6.40e+00 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2gvkA 317 6.40e+00 1h7wA 1025 6.54e+00 1h7wA a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1qmpA 130 7.19e+00 1dz3A c.23.1.1 31106 1khbA 625 8.21e+00 c.91.1.1,c.109.1.1 68606,68607 1gowA 489 8.65e+00 1qvbA c.1.8.4 28981 1k87A 669 8.69e+00 a.176.1.1,c.1.23.2 77286,77287 1ewnA 219 8.84e+00 1bnkA b.46.1.2 25762 1h5rA 293 8.92e+00 c.68.1.6 65623 1kskA 234 9.10e+00 d.66.1.5,d.265.1.3 72920,90389 1y7mA 164 9.40e+00 1fxoA 293 9.72e+00 1g0rA c.68.1.6 34524 2gclA 261 9.84e+00 1dz3A 130 1.08e+01 1dz3A c.23.1.1 31105 1g7fA 298 1.09e+01 1pty c.45.1.2 60330 1wdnA 226 1.14e+01 1lst c.94.1.1 35816 2b8mA 117 1.22e+01 1a70 97 1.37e+01 1awd d.15.4.1 37678 1qf6A 642 1.38e+01 1qf6A c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1ve4A 206 1.39e+01 1mp4A 292 1.46e+01 c.68.1.6 79376 1wriA 93 1.47e+01 2f71A 298 1.48e+01 1c4rA 182 1.48e+01 1c4rA b.29.1.4 24229 1evlA 401 1.53e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1lq9A 112 1.54e+01 d.58.4.3 78129 1oa4A 222 1.56e+01 b.29.1.11 86731 1yo8A 634 1.59e+01 1us5A 314 1.63e+01 c.94.1.1 99856 1cr5A 189 1.64e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1lylA 504 1.67e+01 1lylA b.40.4.1,d.104.1.1 25261,40717 1f0iA 504 1.70e+01 1f0iA d.136.1.2,d.136.1.2 59566,59567 1tllA 688 1.73e+01 b.43.4.1,c.23.5.2,c.25.1.4 107128,107129,107130 1do6A 124 1.80e+01 1do6A b.1.13.1 22361 1v0wA 506 1.85e+01 d.136.1.2,d.136.1.2 108220,108221 1pa1A 310 1.90e+01 c.45.1.2 94404 1x3lA 440 1.93e+01 1qlpA 394 1.97e+01 1ovaA e.1.1.1 42628 1u69A 163 1.98e+01 d.32.1.7 107699 1mdbA 539 1.98e+01 e.23.1.1 79008 1ptvA 321 2.07e+01 1pty c.45.1.2 32665 1y7bA 542 2.11e+01 1wggA 96 2.15e+01 1ciy 590 2.18e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1f20A 435 2.20e+01 b.43.4.1,c.25.1.4 64932,64933 1vfjA 116 2.24e+01 1uwsA 489 2.26e+01 c.1.8.4 108073 1ezwA 349 2.27e+01 1ezwA c.1.16.3 29558 1zoxA 113 2.29e+01 1sq2N 113 2.31e+01 b.1.1.1 105881 1ww9A 392 2.36e+01 1dqiA 124 2.41e+01 1do6A b.1.13.1 22357 2a46A 238 2.44e+01 1tmy 120 2.69e+01 1dbwA c.23.1.1 31083 1vi2A 300 2.70e+01 c.2.1.7,c.58.1.5 100726,100727 1u0sY 118 2.76e+01 c.23.1.1 107566 1d7yA 408 2.77e+01 1d7yA c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1umkA 275 2.83e+01 1lzlA 323 2.83e+01 c.69.1.2 78306 1v9sA 208 2.85e+01 1xewX 182 2.89e+01 1b77A 228 2.90e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1j58A 385 2.91e+01 b.82.1.2 71531 1wnfA 328 2.92e+01 2ex4A 241 3.05e+01 1befA 181 3.05e+01 1befA b.47.1.3 26419 1iqaA 160 3.06e+01 b.22.1.1 71274 1yo1A 260 3.07e+01 1q0eA 152 3.16e+01 b.1.8.1 95504 1a7i 81 3.24e+01 1b8tA g.39.1.3,g.39.1.3 45143,45144 1z4vA 532 3.28e+01 1y89A 238 3.32e+01 1s55A 156 3.33e+01 1tuwA 109 3.33e+01 d.58.4.8 107346 1lf7A 182 3.34e+01 b.60.1.1 73878 1lqtA 456 3.35e+01 c.3.1.1,c.4.1.1 74198,74199 1cbjA 151 3.36e+01 1mfmA b.1.8.1 22213 1lugA 259 3.38e+01 b.74.1.1 91127 1xknA 355 3.38e+01 1wi1A 126 3.39e+01 1q1oA 98 3.42e+01 d.15.2.2 95596 2fomB 185 3.43e+01 2ar9A 278 3.47e+01 1s8nA 205 3.51e+01 c.23.1.1 105374 2cba 260 3.51e+01 2cba b.74.1.1 27821 2bvfA 459 3.52e+01 1fsgA 233 3.53e+01 1qk3A c.61.1.1 34029 1o7iA 119 3.54e+01 b.40.4.3 86642 1c0eA 157 3.55e+01 1dg9A c.44.1.1 32638 1z4xA 532 3.63e+01 1vi6A 208 3.66e+01 c.23.15.1 100736 2b7yA 182 3.68e+01 2b4wA 315 3.69e+01 1b1cA 181 3.70e+01 1amoA c.23.5.2 31212 1wlsA 328 3.76e+01 1e9pA 151 3.80e+01 1mfmA b.1.8.1 22215 1lam 484 3.87e+01 1lam c.50.1.1,c.56.5.3 33166,33829 1e1oA 504 3.95e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 830cA 168 3.96e+01 1ck7A d.92.1.11 40400 1erjA 393 4.13e+01 1erjA b.69.4.1 27660 2gk3A 256 4.26e+01 1vdxA 184 4.28e+01 1cjbA 231 4.32e+01 1qk3A c.61.1.1 34079 1m6iA 493 4.33e+01 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1p7tA 731 4.33e+01 c.1.13.1 94319 3il8 72 4.37e+01 1tvxA d.9.1.1 37356 1qx4A 274 4.37e+01 b.43.4.2,c.25.1.1 104624,104625 2azpA 318 4.41e+01 1m3iA 471 4.41e+01 f.9.1.1 91178 2b0aA 186 4.44e+01 1cot 129 4.50e+01 1ycc a.3.1.1 15899 1ja1A 622 4.51e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1nbfD 76 4.52e+01 d.15.1.1 80390 1sr4B 261 4.61e+01 d.151.1.1 105949 1fjgE 162 4.67e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 2fpqA 444 4.68e+01 1hdoA 206 4.70e+01 1he2A c.2.1.2 60965 1llnA 262 4.78e+01 d.165.1.1 84625 2bdrA 175 4.84e+01 1a04A 215 4.93e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 2d0eA 407 4.95e+01 2cb2A 318 4.98e+01 1g291 372 5.01e+01 1g291 1oxsC 353 5.04e+01 b.40.6.3,c.37.1.12 87519,87520 1e30A 155 5.08e+01 1rcy b.6.1.1 23016 1k66A 149 5.18e+01 c.23.1.1 90941 3sil 379 5.28e+01 3sil b.68.1.1 27542 1vl6A 388 5.38e+01 c.2.1.7,c.58.1.3 108724,108725 1jmxA 494 5.42e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1v8hA 107 5.61e+01 1ntyA 311 5.65e+01 a.87.1.1,b.55.1.1 103873,103874 1ogwA 76 5.67e+01 d.15.1.1 87001 1rc9A 221 5.73e+01 1dkiA 371 5.76e+01 1dkiA d.3.1.1 37090 1n62B 809 5.78e+01 d.41.1.1,d.133.1.1 80092,80093 1zxiB 809 5.82e+01 1oc2A 348 6.01e+01 c.2.1.2 92765 1vjvA 415 6.05e+01 d.3.1.9 108632 1y4jA 284 6.08e+01 1to4A 156 6.14e+01 b.1.8.1 107162 1fr7A 260 6.16e+01 2cba b.74.1.1 27828 1oxxK 353 6.18e+01 b.40.6.3,c.37.1.12 93715,93716 2aaa 484 6.24e+01 7taa b.71.1.1,c.1.8.1 27777,28764 2coeA 120 6.24e+01 1kepA 348 6.26e+01 c.2.1.2 68536 1qj2B 809 6.26e+01 1qj2B 1dkgA 197 6.33e+01 1dkgA b.73.1.1,h.1.9.1 27812,45626 2d09A 407 6.36e+01 1w96A 554 6.37e+01 1zoyA 622 6.37e+01 1foeA 377 6.38e+01 1foeA a.87.1.1,b.55.1.1 18517,26969 1m6pA 152 6.38e+01 1m6pA b.64.1.1 27519 1df7A 159 6.41e+01 3dfr c.71.1.1 34885 1mveA 243 6.43e+01 b.29.1.2 85140 1e2wA 251 6.47e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 2b9hA 353 6.49e+01 1i7pA 274 6.57e+01 b.43.4.2,c.25.1.1 66048,66049 1frrA 95 6.63e+01 1awd d.15.4.1 37674 1zccA 248 6.65e+01 1v93A 296 6.66e+01 c.1.23.1 100532 1o9wA 177 6.68e+01 b.2.3.5 86713 1r4wA 226 6.73e+01 c.47.1.13 97050 1bl3A 160 6.77e+01 1b9dA c.55.3.2 33655 1ubi 76 6.95e+01 1ubi d.15.1.1 37584 1hp1A 516 7.15e+01 d.114.1.1,d.159.1.2 70976,70977 1zoiA 276 7.15e+01 1fa8A 135 7.20e+01 1qipA d.32.1.1 38486 1q8fA 313 7.23e+01 c.70.1.1 96203 1v4vA 376 7.28e+01 c.87.1.3 100313 1o26A 232 7.32e+01 d.207.1.1 86566 1zk5A 176 7.34e+01 1pbtA 244 7.36e+01 c.124.1.1 94416 4fgf 146 7.40e+01 1bfg b.42.1.1 25486 1kit 757 7.40e+01 1kit b.29.1.8,b.29.1.8,b.68.1.1 24272,24273,27616 1vgjA 184 7.40e+01 1u2cA 246 7.42e+01 b.1.6.2,d.272.1.1 107610,107611 1bfg 146 7.46e+01 1bfg b.42.1.1 25485 2bw2A 140 7.54e+01 2bkrB 77 7.55e+01 1yr4A 237 7.55e+01 2f91A 237 7.56e+01 1t5rA 284 7.57e+01 f.6.1.1 106465 2crvA 120 7.63e+01 1k68A 140 7.64e+01 c.23.1.1 90943 1e5kA 201 7.65e+01 1fr9A c.68.1.8 34578 1rg8A 146 7.66e+01 1fs0E 138 7.69e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1p63A 144 7.69e+01 b.42.1.1 94153 1acf 125 7.73e+01 3nul d.110.1.1 40882 1djnA 729 7.76e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28612,30313,30598 1oalA 151 7.79e+01 b.1.8.1 86739 1dg9A 157 7.88e+01 1dg9A c.44.1.1 32637 1s1fA 406 7.89e+01 1d8cA 723 7.90e+01 1d8cA c.1.13.1 29325 1vl1A 232 7.90e+01 c.124.1.1 108707 2gefA 217 7.90e+01 1prn 289 7.91e+01 3prn f.4.3.1 43762 1ush 550 7.95e+01 1ush d.114.1.1,d.159.1.2 40923,42079 1yr1A 119 7.97e+01 1h4xA 117 8.02e+01 1auz c.13.2.1 60626 1w0pA 781 8.03e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1xe7A 203 8.10e+01 1qwtA 255 8.10e+01 b.26.1.3 96501 2biwA 490 8.11e+01 1sgwA 214 8.12e+01 c.37.1.12 105541 1v6sA 390 8.13e+01 c.86.1.1 100424 1xwwA 157 8.13e+01 1zq4A 693 8.14e+01 1npuA 117 8.14e+01 b.1.1.1 92038 2calA 154 8.26e+01 1r13A 148 8.32e+01 d.169.1.1,h.1.1.1 96782,96783 1mxtA 504 8.36e+01 c.3.1.2,d.16.1.1 79671,79672 2g5dA 422 8.38e+01 1mu5A 471 8.41e+01 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1b4vA 504 8.50e+01 1b8sA c.3.1.2,d.16.1.1 30334,37865 1t94A 459 8.64e+01 d.240.1.1,e.8.1.7 106701,106702 1jmmA 377 8.67e+01 b.30.6.1 71749 1kv9A 668 8.70e+01 a.3.1.6,b.70.1.1 73056,73057 1vl4A 447 8.70e+01 d.283.1.1 108718 1zdrA 164 8.76e+01 1vqoD 177 8.76e+01 1z7mA 344 8.94e+01