# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yndA 165 7.58e-34 2cpl 165 7.99e-34 2cpl b.62.1.1 27420 1awsA 164 9.96e-34 2cpl b.62.1.1 27431 1awqA 164 1.10e-33 2cpl b.62.1.1 27461 2bitX 165 1.46e-33 1a58 177 7.93e-33 2cpl b.62.1.1 27495 1dywA 173 9.03e-33 2cpl b.62.1.1 27505 2cfeA 162 9.81e-33 1zcxA 178 1.84e-32 1xo7A 166 1.97e-32 1qoiA 177 3.43e-32 2cpl b.62.1.1 27490 2rmcA 182 3.75e-32 2cpl b.62.1.1 27491 1vdnA 162 5.22e-32 1ihgA 370 2.45e-31 2cpl a.118.8.1,b.62.1.1 62380,62381 1h0pA 182 4.73e-31 b.62.1.1 76450 2a2nA 176 3.94e-30 1xwnA 174 1.42e-29 1zkcA 197 2.70e-29 2b71A 196 2.19e-28 2fu0A 160 4.48e-28 1j2aA 166 8.02e-26 b.62.1.1 90779 1v9tA 166 8.99e-26 b.62.1.1 108451 1lopA 164 2.01e-25 2cpl b.62.1.1 27510 1mxiA 160 7.42e-01 c.116.1.1 79646 1zx8A 136 1.31e+00 2fug5 207 5.54e+00 1isiA 265 6.32e+00 e.4.1.1 71394 1mdbA 539 6.99e+00 e.23.1.1 79008 2bf6A 449 7.69e+00 1f7uA 607 8.82e+00 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1dgnA 89 8.92e+00 1dgnA a.77.1.3 18436 1m3iA 471 1.03e+01 f.9.1.1 91178 1zoxA 113 1.06e+01 1icpA 376 1.08e+01 1oyc c.1.4.1 62270 2bzgA 232 1.11e+01 1pfo 500 1.16e+01 1pfo f.9.1.1 43826 1vjvA 415 1.29e+01 d.3.1.9 108632 1wi1A 126 1.29e+01 2b4wA 315 1.32e+01 1gggA 226 1.37e+01 1lst c.94.1.1 35817 1vqvA 306 1.62e+01 1ufbA 127 1.62e+01 a.24.16.3 99331 1pswA 348 1.72e+01 c.87.1.7 88287 1zq4A 693 1.90e+01 1u9lA 70 2.00e+01 a.60.4.2 107751 1pg6A 243 2.08e+01 b.82.5.2 94673 1yoxA 250 2.39e+01 1k4nA 192 2.51e+01 d.32.1.5 72059 1rypI 222 2.76e+01 d.153.1.4 41877 1fj2A 232 3.05e+01 1auoA c.69.1.14 34720 2ffjA 300 3.31e+01 2dd8S 202 3.33e+01 1sqsA 242 3.62e+01 c.23.5.5 98968 1x24A 180 3.62e+01 1tueA 212 3.91e+01 c.37.1.20 107323 1wdnA 226 4.05e+01 1lst c.94.1.1 35816 1vhoA 346 4.11e+01 b.49.3.1,c.56.5.4 100694,100695 1fjjA 159 4.21e+01 1fjjA b.17.1.2 59852 1qmpA 130 4.48e+01 1dz3A c.23.1.1 31106 1wraA 308 4.49e+01 1q0eA 152 4.73e+01 b.1.8.1 95504 1g8lA 411 4.82e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1q1rA 431 5.24e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1kzqA 289 5.40e+01 b.6.2.1,b.6.2.1 73374,73375 1tw6A 133 5.41e+01 1zroA 602 5.42e+01 1cbjA 151 5.43e+01 1mfmA b.1.8.1 22213 2d2sA 235 5.65e+01 1kuuA 202 5.81e+01 d.153.2.1 73019 2bibA 547 5.84e+01 1a0tP 413 5.99e+01 1a0tP f.4.3.2 43794 1a8l 226 6.31e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 2aaoA 166 6.40e+01 1kg0C 136 6.49e+01 d.169.1.1 72445 1dz3A 130 6.50e+01 1dz3A c.23.1.1 31105 1f5nA 592 6.64e+01 1dg3A a.114.1.1,c.37.1.8 19077,32152 1e9pA 151 6.79e+01 1mfmA b.1.8.1 22215 1y7pA 223 6.98e+01 2gefA 217 7.24e+01 1a8y 367 7.37e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1rypL 212 7.44e+01 d.153.1.4 41880 1oktA 211 7.60e+01 a.45.1.1,c.47.1.5 93272,93273 1okiA 210 7.80e+01 b.11.1.1,b.11.1.1 93255,93256 1h61A 364 8.13e+01 1oyc c.1.4.1 60657 1bkjA 240 8.40e+01 1bkjA d.90.1.1 40243 1qhiA 366 8.51e+01 1qhiA c.37.1.1 31860 1x1fA 149 8.53e+01 1vypX 364 8.63e+01 c.1.4.1 108905 1h7sA 365 8.63e+01 d.14.1.3,d.122.1.2 65705,65706 1o26A 232 8.75e+01 d.207.1.1 86566 1kcbA 340 8.80e+01 b.6.1.3,b.6.1.3 90951,90952 1gvoA 364 8.88e+01 c.1.4.1 76357 1smvA 260 8.89e+01 1smvA b.121.4.7 23288