# List of top-scoring protein chains for T0345.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f8aA 208 2.99e-34 1gp1A 198 5.89e-34 1gp1A c.47.1.10 33059 2gs3A 185 1.07e-31 1xzoA 174 5.52e-12 1on4A 174 5.52e-12 c.47.1.10 93355 1st9A 143 2.53e-08 c.47.1.10 98987 2f9sA 151 2.69e-08 1jfuA 186 2.85e-07 c.47.1.10 62940 2cvbA 188 2.11e-04 1kngA 156 4.11e-04 c.47.1.10 72777 1wp0A 165 4.05e-03 2gqkA 173 4.12e-03 2ggtA 164 4.34e-03 1z5yE 149 5.77e-03 1qk8A 146 1.13e-02 1ewxA c.47.1.10 33061 1ezkA 153 1.15e-02 1ewxA c.47.1.10 33063 1ewxA 146 1.17e-02 1ewxA c.47.1.10 33062 1okdA 154 1.17e-02 c.47.1.10 93249 1xwaA 111 1.70e-02 1oc9A 152 1.73e-02 c.47.1.10 86797 1xvwA 160 1.79e-02 1xxuA 153 1.80e-02 1o73A 144 1.82e-02 c.47.1.10 86638 1xwbA 106 1.89e-02 1o6jA 150 2.16e-02 c.47.1.10 81089 1o81A 152 2.16e-02 c.47.1.10 81175 1fg4A 149 2.17e-02 1ewxA c.47.1.10 59814 1o8xA 146 3.02e-02 c.47.1.10 86681 1wmjA 130 4.81e-02 1t00A 112 5.15e-02 2b5xA 148 5.67e-02 3trx 105 5.68e-02 1erv c.47.1.1 32757 1i5gA 144 6.25e-02 1ewxA c.47.1.10 61784 2fy6A 143 8.13e-02 1thx 115 9.25e-02 1thx c.47.1.1 32732 1ert 105 1.16e-01 1erv c.47.1.1 32744 1lu4A 136 1.21e-01 c.47.1.10 91124 1aiu 105 1.47e-01 1erv c.47.1.1 32746 1qmvA 197 1.62e-01 1qq2A c.47.1.10 33066 1erv 105 1.96e-01 1erv c.47.1.1 32743 1trs 105 2.17e-01 1erv c.47.1.1 32753 2b7kA 200 4.01e-01 1r26A 125 4.49e-01 c.47.1.1 96847 1zzoA 136 4.73e-01 1cqgA 105 5.82e-01 1erv c.47.1.1 32756 2d9hA 78 8.18e-01 2a4vA 159 1.21e+00 1e2yA 188 1.29e+00 1qq2A c.47.1.10 59173 1pk1A 89 1.64e+00 2gglA 304 1.85e+00 1fo6A 304 1.85e+00 1erzA d.160.1.2 59923 2ggkA 304 1.85e+00 2trxA 108 2.27e+00 1thx c.47.1.1 32719 2fd3A 108 2.37e+00 1zzyA 108 2.38e+00 1srx 108 2.47e+00 1thx c.47.1.1 32729 1kebA 108 2.52e+00 c.47.1.1 77341 1uf5A 303 2.67e+00 d.160.1.2 107808 2cokA 113 2.69e+00 2tir 108 2.72e+00 1thx c.47.1.1 32721 1erzA 303 2.78e+00 1erzA d.160.1.2 59498 1f9mA 112 2.88e+00 1erv c.47.1.1 32736 1faaA 124 3.01e+00 1erv c.47.1.1 32738 2fchA 108 3.23e+00 1zyeA 220 3.46e+00 2djjA 121 3.61e+00 1ep8A 112 3.67e+00 c.47.1.1 64907 1qq2A 199 4.02e+00 1qq2A c.47.1.10 33064 1we0A 187 4.42e+00 1f74A 293 4.97e+00 1nal3 c.1.10.1 29079 1ep7A 112 5.26e+00 c.47.1.1 64905 1dvh 79 5.60e+00 1c53 a.3.1.1 15802 1xccA 220 5.69e+00 1e08E 78 5.80e+00 i.4.1.1 45916 2f51A 118 6.45e+00 1erw 105 6.50e+00 1erv c.47.1.1 32745 1eejA 216 6.69e+00 1eejA c.47.1.9,d.17.3.1 33057,38071 1f6mC 108 6.96e+00 1thx c.47.1.1 32725 1bvoA 175 7.66e+00 1a3qA b.2.5.3 22457 2dvh 79 8.59e+00 1c53 a.3.1.1 15803 2cvkA 110 9.13e+00 1vhxA 150 1.01e+01 c.55.3.8 100712 1ti3A 113 1.15e+01 1uulA 202 1.19e+01 1kw4A 89 1.24e+01 a.60.1.2 73077 2cx4A 164 1.25e+01 1qxhA 167 1.28e+01 c.47.1.10 96528 1o6fA 710 1.42e+01 b.69.7.1,c.69.1.4 81085,81086 1o6gA 710 1.44e+01 b.69.7.1,c.69.1.4 81087,81088 1e8nA 710 1.45e+01 1qfmA b.69.7.1,c.69.1.4 27675,34643 1e5tA 710 1.45e+01 1qfmA b.69.7.1,c.69.1.4 27676,34644 1vz3A 710 1.45e+01 b.69.7.1,c.69.1.4 108947,108948 1h2wA 710 1.45e+01 b.69.7.1,c.69.1.4 76596,76597 1h2xA 710 1.46e+01 b.69.7.1,c.69.1.4 76598,76599 1ti8B 172 1.60e+01 1oz9A 150 1.62e+01 d.92.1.15 93808 1c53 79 1.67e+01 1c53 a.3.1.1 15801 2c21A 144 1.68e+01 1m7tA 107 1.71e+01 c.47.1.1 78745 1hh1A 143 1.75e+01 1gefA c.52.1.18 61036 1f1uA 323 1.82e+01 d.32.1.3,d.32.1.3 83200,83201 1xypA 190 1.88e+01 1axkA b.29.1.11 24327 1x5cA 121 1.92e+01 1x6hA 86 1.95e+01 1lj9A 144 2.11e+01 a.4.5.28 78035 1txxA 108 2.12e+01 1thx c.47.1.1 32724 2bmxA 195 2.26e+01 1s1iU 126 2.36e+01 i.1.1.1 105195 1q35A 320 2.40e+01 c.94.1.1 95661 2cb3A 175 2.43e+01 1wlsA 328 2.43e+01 2bmaA 470 2.54e+01 2gedA 193 2.64e+01 1ukz 203 2.67e+01 1zin c.37.1.1 31840 1xjlA 319 2.68e+01 1w7bA 339 2.75e+01 1nrjB 218 2.89e+01 c.37.1.8 86125 1vz2A 710 2.90e+01 b.69.7.1,c.69.1.4 108945,108946 1h4lD 147 2.91e+01 a.74.1.1 70873 1zcpA 108 2.97e+01 1qzzA 374 3.01e+01 a.4.5.29,c.66.1.12 96719,96720 1jzoA 216 3.05e+01 c.47.1.9,d.17.3.1 84267,84268 1pmhX 185 3.05e+01 b.18.1.18 104193 1jzdA 220 3.06e+01 c.47.1.9,d.17.3.1 84257,84258 1zq1A 438 3.07e+01 2bw0A 329 3.26e+01 1v98A 140 3.28e+01 1up4A 415 3.35e+01 1up6A 416 3.36e+01 c.2.1.5,d.162.1.2 107976,107977 1up7A 417 3.36e+01 1fb6A 105 3.60e+01 1thx c.47.1.1 32739 1wdrA 495 3.64e+01 1gl8A 104 3.65e+01 c.47.1.1 65290 1vpqA 273 3.67e+01 2chlA 351 3.84e+01 2b5eA 504 3.88e+01 1qj4A 257 3.96e+01 1qj4A c.69.1.20 34796 1sckA 257 3.96e+01 c.69.1.20 105421 1yb6A 256 3.99e+01 1syrA 112 4.14e+01 c.47.1.1 99028 2f7fA 494 4.14e+01 1wdsA 495 4.23e+01 1eo9B 241 4.25e+01 3pchM b.3.6.1 22826 1te1B 190 4.25e+01 b.29.1.11 106791 5hpgA 84 4.29e+01 5hpgA g.14.1.1 44642 8rucI 123 4.31e+01 1rboC d.73.1.1 39629 1fcqA 350 4.39e+01 c.1.8.9 65006 1ir1S 123 4.59e+01 d.73.1.1 71290 1unlD 208 4.67e+01 2bl1A 172 4.72e+01 1yvoA 172 4.73e+01 1xi7A 61 4.77e+01 1hgxA 183 4.82e+01 1tc1A c.61.1.1 34027 1xnd 190 4.97e+01 1axkA b.29.1.11 24321 1cvsC 225 5.02e+01 1cvsC b.1.1.4,b.1.1.4 21726,21727 1evtC 225 5.03e+01 1cvsC b.1.1.4,b.1.1.4 21730,21731 1vig 71 5.08e+01 1vih d.51.1.1 38806 1zofA 198 5.22e+01 1uayA 242 5.23e+01 c.2.1.2 88390 1zarA 282 5.25e+01 1uepA 103 5.27e+01 b.36.1.1 99270 2fgxA 107 5.34e+01 2f2lX 167 5.43e+01 1wdqA 495 5.50e+01 2as0A 396 5.74e+01 1xflA 124 5.82e+01 c.47.1.1 109586 1dwoA 262 5.86e+01 1qj4A c.69.1.20 34804 1mek 120 5.89e+01 1erv c.47.1.2 32775 1gm6A 175 6.16e+01 b.60.1.1 70272 1ga6A 372 6.19e+01 1ga1A c.41.1.2 32556 1gu2A 124 6.20e+01 a.3.1.1 76348 1kdvA 370 6.21e+01 c.41.1.2 68486 1p3jA 217 6.23e+01 c.37.1.1,g.41.2.1 94022,94023 1w2b5 144 6.36e+01 1x0rA 249 6.40e+01 2cv4A 250 6.42e+01 1eb8A 262 6.49e+01 c.69.1.20 64896 1q6eA 495 6.52e+01 c.1.8.1 95972 2his 312 6.64e+01 1taxA c.1.8.3 28918 1c0aA 585 6.72e+01 1c0aA b.40.4.1,d.74.4.1,d.104.1.1 25246,39731,40767 1ni3A 392 6.75e+01 c.37.1.8,d.15.10.2 80531,80532 1il2A 590 6.78e+01 b.40.4.1,d.74.4.1,d.104.1.1 66193,66194,66195 2a5lA 200 6.81e+01 1zwkA 207 6.88e+01 1ujdA 117 6.89e+01 b.36.1.1 99454 1emuA 132 6.90e+01 1agrE a.91.1.1 18549 1e4fT 419 6.92e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 1dk8A 147 6.93e+01 1agrE a.91.1.1 18548 1bjt 793 6.95e+01 1bjt e.11.1.1 43249 2ay1A 394 7.19e+01 1ajsA c.67.1.1 34357 1x42A 232 7.25e+01 1dwqA 262 7.39e+01 1qj4A c.69.1.20 34808 1btc 491 7.45e+01 1byb c.1.8.1 28791 1byb 495 7.55e+01 1byb c.1.8.1 28790 1k1dA 460 7.68e+01 b.92.1.3,c.1.9.6 71979,71980 1xrsB 262 7.69e+01 1tho 109 7.99e+01 1thx c.47.1.1 32722 2c47A 313 8.05e+01 1wdpA 495 8.07e+01 1q6dA 495 8.07e+01 c.1.8.1 95971 1v3hA 495 8.09e+01 c.1.8.1 108303 1vi4A 174 8.10e+01 c.8.7.1 100731 1w26A 432 8.22e+01 a.223.1.1,d.241.2.1,d.26.1.1 109085,109086,109087 1ta3A 274 8.34e+01 c.1.8.5 106731 1psqA 163 8.41e+01 c.47.1.10 88283 1ek0A 170 8.50e+01 1ctqA c.37.1.8 32076 1vqoA 240 8.60e+01 1ag9A 175 8.60e+01 1rcf c.23.5.1 31178 2fdoA 94 8.64e+01 1z3eA 132 8.66e+01 1s2jA 209 8.99e+01 d.118.1.1 105227