# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f8aA 208 9.76e-28 1xzoA 174 2.37e-12 1st9A 143 8.24e-10 c.47.1.10 98987 1jfuA 186 1.36e-09 c.47.1.10 62940 2f9sA 151 2.59e-09 2cvbA 188 6.19e-07 2b7kA 200 1.63e-05 1lu4A 136 2.39e-05 c.47.1.10 91124 1kngA 156 2.68e-05 c.47.1.10 72777 1xvwA 160 2.93e-05 1zzoA 136 5.18e-05 1qmvA 197 1.55e-04 1qq2A c.47.1.10 33066 1o8xA 146 1.59e-04 c.47.1.10 86681 1z5yE 149 1.90e-04 2fy6A 143 3.26e-04 1i5gA 144 3.81e-04 1ewxA c.47.1.10 61784 1x0rA 249 6.43e-03 1uf5A 303 1.15e-02 d.160.1.2 107808 1t00A 112 1.47e-02 1o2dA 371 1.89e-02 e.22.1.2 86591 1faaA 124 4.02e-02 1erv c.47.1.1 32738 1xvqA 175 4.24e-02 1erv 105 4.25e-02 1erv c.47.1.1 32743 1bvoA 175 4.44e-02 1a3qA b.2.5.3 22457 1yvoA 172 5.05e-02 1thx 115 5.57e-02 1thx c.47.1.1 32732 1xccA 220 7.86e-02 2trxA 108 1.41e-01 1thx c.47.1.1 32719 1r26A 125 1.75e-01 c.47.1.1 96847 1n8jA 186 2.54e-01 c.47.1.10 85401 1erw 105 2.59e-01 1erv c.47.1.1 32745 2a4vA 159 2.74e-01 1kk1A 410 3.82e-01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1w4vA 119 4.58e-01 1vicA 262 7.78e-01 c.68.1.13 100756 1vhxA 150 9.08e-01 c.55.3.8 100712 1eejA 216 9.10e-01 1eejA c.47.1.9,d.17.3.1 33057,38071 1f1uA 323 1.12e+00 d.32.1.3,d.32.1.3 83200,83201 2f51A 118 1.12e+00 1z7gA 217 1.15e+00 1hh1A 143 1.22e+00 1gefA c.52.1.18 61036 1vpqA 273 1.43e+00 1fsgA 233 1.50e+00 1qk3A c.61.1.1 34029 2a5lA 200 1.71e+00 1b5qA 472 1.72e+00 1b37B c.3.1.2,d.16.1.5 30404,37968 1szwA 379 1.81e+00 d.265.1.4 99047 1vixA 420 1.82e+00 c.56.5.4,d.58.19.1 100777,100778 1uptA 171 1.84e+00 c.37.1.8 99767 1m2dA 110 1.99e+00 c.47.1.11 78476 2a5dA 175 2.15e+00 1nswA 105 2.19e+00 c.47.1.1 92097 1wosA 364 2.34e+00 b.44.2.1,d.250.1.1 109468,109469 1g3qA 237 2.37e+00 1hyqA c.37.1.10 60237 1v98A 140 2.62e+00 1xi7A 61 2.67e+00 1hgxA 183 2.71e+00 1tc1A c.61.1.1 34027 3tmkA 216 2.76e+00 3tmkA c.37.1.1 31920 1oacA 727 3.05e+00 1oacA b.30.2.1,d.17.2.1,d.17.2.1,d.82.1.1 24390,38007,38008,40003 1ars 396 3.37e+00 1ajsA c.67.1.1 34287 2axoA 270 3.80e+00 1vmeA 410 3.92e+00 c.23.5.1,d.157.1.3 108893,108894 1e5dA 402 3.96e+00 1e5dA c.23.5.1,d.157.1.3 31208,42061 1ra0A 430 4.00e+00 8rucI 123 4.18e+00 1rboC d.73.1.1 39629 2fqxA 318 4.19e+00 1ecfA 504 4.45e+00 1ecfB c.61.1.1,d.153.1.1 34053,41820 1yvrA 538 4.53e+00 1hd2A 161 4.56e+00 c.47.1.10 60962 1rljA 139 4.61e+00 c.23.5.7 104983 2ae0X 345 4.85e+00 1t64A 377 5.00e+00 c.42.1.2 106543 1fh9A 312 5.23e+00 1taxA c.1.8.3 28913 1f89A 291 5.50e+00 d.160.1.1 64988 1e4fT 419 5.74e+00 1e4fT c.55.1.1,c.55.1.1 33453,33454 1bykA 255 6.34e+00 1bykA c.93.1.1 35706 2f2lA 167 6.62e+00 1prxA 224 6.98e+00 1prxA c.47.1.10 33076 1w8sA 263 7.10e+00 1j05B 121 7.37e+00 b.1.1.1 90736 1io2A 213 7.44e+00 1ekeA c.55.3.1 62612 2b9wA 424 7.45e+00 1fxoA 293 7.82e+00 1g0rA c.68.1.6 34524 2fneA 117 7.82e+00 2az4A 429 7.83e+00 1pj5A 830 7.93e+00 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1ecsA 126 8.23e+00 1ecsA d.32.1.2 59407 2czrA 226 8.26e+00 1ufoA 238 8.56e+00 c.69.1.27 99344 1qsgA 265 8.69e+00 1eny c.2.1.2 29935 1mo0A 275 8.91e+00 c.1.1.1 79329 2c1lA 358 9.14e+00 2fikA 287 9.22e+00 1t5bA 201 9.40e+00 c.23.5.3 106433 1wycA 392 9.43e+00 1yx1A 264 9.45e+00 1gqzA 274 9.83e+00 d.21.1.1,d.21.1.1 83311,83312 1t71A 281 1.00e+01 1pch 88 1.03e+01 1ptf d.94.1.1 40564 1ohvA 472 1.03e+01 c.67.1.4 93031 1nu0A 138 1.05e+01 c.55.3.8 92165 1bx1A 314 1.06e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1fnd 314 1.09e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1gteA 1025 1.11e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 1n3lA 372 1.12e+01 c.26.1.1 79966 1zj6A 187 1.12e+01 1m7yA 435 1.13e+01 c.67.1.4 78761 2c1iA 431 1.15e+01 1vq0A 302 1.17e+01 1q6uA 245 1.17e+01 d.26.1.1 95998 1zbqA 327 1.19e+01 1o5xA 248 1.20e+01 c.1.1.1 92528 1uf3A 228 1.20e+01 d.159.1.6 99317 1wleA 501 1.21e+01 1vjoA 393 1.23e+01 c.67.1.3 100827 1wznA 252 1.24e+01 1m98A 317 1.24e+01 a.175.1.1,d.17.4.6 78866,78867 1f1xA 322 1.25e+01 d.32.1.3,d.32.1.3 83208,83209 1a8l 226 1.27e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1nm8A 616 1.33e+01 c.43.1.3,c.43.1.3 85872,85873 2fomB 185 1.36e+01 1txlA 215 1.38e+01 b.60.1.4 107429 1t1uA 639 1.40e+01 1n2eA 300 1.41e+01 c.26.1.4 85268 2gaeA 346 1.42e+01 1kllA 130 1.42e+01 d.32.1.2 72720 1ogiA 303 1.43e+01 b.43.4.2,c.25.1.1 92914,92915 1sviA 195 1.45e+01 c.37.1.8 106048 2c6qA 351 1.49e+01 1v74A 107 1.55e+01 d.243.1.1 100442 2ae6A 166 1.56e+01 1lba 146 1.56e+01 1lba d.118.1.1 41062 1ls1A 295 1.58e+01 a.24.13.1,c.37.1.10 78170,78171 2cybA 323 1.69e+01 1vhuA 211 1.71e+01 c.50.1.2 100703 1xdnA 277 1.71e+01 1n9lA 109 1.71e+01 d.110.3.6 85468 1d2fA 390 1.74e+01 1d2fA c.67.1.3 34411 1tp9A 162 1.77e+01 1n67A 359 1.80e+01 b.2.3.4,b.2.3.4 85354,85355 1tg0A 68 1.80e+01 1ktbA 405 1.88e+01 b.71.1.1,c.1.8.1 72960,72961 1rqpA 299 1.99e+01 b.141.1.1,c.132.1.1 97754,97755 1xm7A 195 2.01e+01 1m6kA 251 2.03e+01 e.3.1.1 78695 1g0cA 364 2.04e+01 7a3hA c.1.8.3 60165 2ga9A 297 2.06e+01 1unqA 125 2.06e+01 b.55.1.1 107968 1zkcA 197 2.09e+01 2dg5B 190 2.10e+01 2b5eA 504 2.11e+01 1t7lA 766 2.15e+01 1jr7A 311 2.18e+01 b.82.2.3 63255 1oboA 169 2.18e+01 c.23.5.1 86776 1xk4C 113 2.19e+01 1vetA 124 2.22e+01 d.110.7.1 108553 2erxA 172 2.23e+01 1vdmA 153 2.23e+01 1xu9A 286 2.24e+01 1wsrA 375 2.26e+01 1rxdA 159 2.26e+01 1zm0A 114 2.28e+01 2bu3A 254 2.30e+01 1h5rA 293 2.31e+01 c.68.1.6 65623 1wvqA 167 2.31e+01 1keaA 221 2.33e+01 a.96.1.2 68491 1ivnA 190 2.33e+01 c.23.10.5 83719 1nsj 205 2.34e+01 1nsj c.1.2.4 28560 1efvB 255 2.36e+01 1efvB c.26.2.3 31634 1vlyA 338 2.39e+01 b.44.2.1,d.250.1.1 108871,108872 1q6hA 224 2.40e+01 d.26.1.1 95975 1mdbA 539 2.41e+01 e.23.1.1 79008 1yzfA 195 2.42e+01 1nn5A 215 2.47e+01 c.37.1.1 85892 1im8A 244 2.49e+01 c.66.1.14 66212 1f6bA 198 2.51e+01 c.37.1.8 64986 1iq4A 179 2.54e+01 1iq4A d.77.1.1 62641 1nf3C 128 2.54e+01 b.36.1.1 85596 1xrkA 124 2.55e+01 2f2lX 167 2.55e+01 2aamA 309 2.58e+01 1senA 164 2.62e+01 c.47.1.1 105465 2ca6A 386 2.63e+01 1um5H 217 2.64e+01 1w77A 228 2.68e+01 2a84A 300 2.70e+01 1ryoA 327 2.71e+01 c.94.1.2 98108 1ub1A 133 2.73e+01 d.10.1.3 99140 1hrhA 136 2.74e+01 1rthA c.55.3.1 33577 1wy7A 207 2.74e+01 1ff9A 450 2.75e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 1bw0A 416 2.75e+01 1bw0A c.67.1.1 34385 1y9zA 441 2.76e+01 1vs0A 310 2.77e+01 2c7pA 327 2.79e+01 1oz9A 150 2.80e+01 d.92.1.15 93808 1f35A 162 2.82e+01 1f35A b.94.1.1 59628 1geeA 261 2.82e+01 c.2.1.2 90509 1ag9A 175 2.83e+01 1rcf c.23.5.1 31178 1fi4A 416 2.84e+01 1fi4A d.14.1.5,d.58.26.2 59847,59848 1kamA 194 2.85e+01 c.26.1.3 72254 1n55A 251 2.86e+01 c.1.1.1 80007 2b18A 164 2.90e+01 2afbA 351 2.93e+01 1xu1R 42 2.93e+01 1vloA 381 2.93e+01 b.44.2.1,d.250.1.1 108838,108839 1y81A 138 2.93e+01 1oywA 523 2.94e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1u9aA 160 2.95e+01 1u9aA d.20.1.1 38333 1wh5A 80 2.95e+01 1pzxA 289 2.95e+01 c.119.1.1 95484 1hzdA 272 2.98e+01 c.14.1.3 65969 1ho8A 480 3.00e+01 1ho8A a.118.1.9 61107 1w1hA 151 3.01e+01 1eokA 290 3.01e+01 1eokA c.1.8.5 28991 1w96A 554 3.07e+01 1q3iA 214 3.07e+01 d.220.1.1 104524 1wehA 171 3.08e+01 1lqtA 456 3.09e+01 c.3.1.1,c.4.1.1 74198,74199 1xx6A 191 3.11e+01 2fdoA 94 3.11e+01 2plc 274 3.24e+01 2plc c.1.18.2 29614 1w3iA 293 3.25e+01 c.1.10.1 109152 2grrA 161 3.27e+01 1dcjA 81 3.27e+01 1dcjA d.68.3.3 59115 1xewX 182 3.31e+01 1eljA 381 3.34e+01 4mbp c.94.1.1 35791 1yb3A 175 3.34e+01 1wxxA 382 3.35e+01 1v5vA 401 3.36e+01 1pea 385 3.37e+01 1pea c.93.1.1 35662 1ihoA 283 3.38e+01 1ihoA c.26.1.4 62390 2cvzA 289 3.38e+01 1ns5A 155 3.39e+01 c.116.1.3 80705 1kshA 186 3.39e+01 c.37.1.8 72914 1kdgA 546 3.40e+01 c.3.1.2,d.16.1.1 77337,77338 1rjdA 334 3.41e+01 c.66.1.37 97558 1vl7A 157 3.41e+01 b.45.1.1 108732 1ycoA 279 3.41e+01 1wmhA 89 3.42e+01 2bgiA 272 3.45e+01 2rslA 140 3.48e+01 2rslA c.53.1.1 33345 2fp7B 172 3.50e+01 1xc3A 302 3.50e+01 1gz2A 142 3.54e+01 d.169.1.1 83392 1wteA 272 3.54e+01 2essA 248 3.56e+01 1n2zA 245 3.57e+01 c.92.2.2 79865 1z06A 189 3.59e+01 2ajrA 331 3.62e+01 1pcfA 66 3.62e+01 1pcfA d.18.1.1 38142 2trcP 217 3.62e+01 1b9yC c.47.1.6 33051 2f4qA 346 3.62e+01 1zx1A 231 3.64e+01 1jb9A 316 3.67e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1uxy 340 3.68e+01 2mbr d.145.1.2,d.146.1.1 41748,41761 2bbsA 290 3.72e+01 1vflA 356 3.78e+01 1zo0A 126 3.79e+01 1mvuB 121 3.79e+01 b.1.1.1 91475 1mp9A 198 3.80e+01 d.129.1.1,d.129.1.1 91385,91386 1iejA 332 3.81e+01 1nnt c.94.1.2 62328 1uxaA 194 3.81e+01 b.21.1.1 108091 1z3eA 132 3.82e+01 1q25A 432 3.83e+01 b.64.1.1,b.64.1.1,b.64.1.1 104493,104494,104495 1t6cA 315 3.87e+01 c.55.1.8,c.55.1.8 106558,106559 1y2qA 143 3.90e+01 2arzA 247 3.90e+01 1t3qB 788 3.92e+01 d.41.1.1,d.133.1.1 106369,106370 1ttwA 138 3.92e+01 d.198.1.1 107308 1sg0A 230 3.95e+01 1lfwA 470 3.95e+01 c.56.5.4,d.58.19.1 77942,77943 1tmxA 293 3.95e+01 1gheA 177 3.99e+01 d.108.1.1 76222 1kkoA 413 4.00e+01 c.1.11.2,d.54.1.1 68675,68676 1vkmA 297 4.00e+01 c.138.1.1 108670 2f1rA 171 4.03e+01 1ek0A 170 4.07e+01 1ctqA c.37.1.8 32076 1rl6A 177 4.08e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 1us5A 314 4.10e+01 c.94.1.1 99856 1vzwA 244 4.14e+01 1ojjA 402 4.16e+01 b.29.1.10 93130 1gxuA 91 4.18e+01 d.58.10.1 76378 1fy7A 278 4.20e+01 1fy7A d.108.1.1 40817 1s3sG 127 4.20e+01 d.15.1.2 98457 1ryp1 222 4.22e+01 1ryp1 2cxcA 144 4.24e+01 1s95A 333 4.33e+01 d.159.1.3 105375 1widA 130 4.36e+01 1zjkA 403 4.40e+01 1uvjA 664 4.40e+01 e.8.1.6 100045 1eerB 227 4.45e+01 1eerB b.1.2.1,b.1.2.1 22011,22012 1w6uA 302 4.45e+01 2bgcA 238 4.47e+01 3cla 213 4.47e+01 3cla c.43.1.1 32610 1nlfA 279 4.47e+01 c.37.1.11 85850 1m1nA 491 4.47e+01 c.92.2.3 78417 1r5yA 386 4.53e+01 c.1.20.1 97134 1suwA 249 4.55e+01 e.52.1.1 106027 1gskA 513 4.56e+01 b.6.1.3,b.6.1.3,b.6.1.3 83314,83315,83316 1tif 78 4.57e+01 1tif d.15.8.1 37836 2as0A 396 4.58e+01 1q0xH 221 4.60e+01 b.1.1.1,b.1.1.2 95517,95518 1mexH 215 4.61e+01 b.1.1.1,b.1.1.2 91257,91258 1rz3A 201 4.62e+01 c.37.1.6 98132 2fazA 78 4.62e+01 1mxmA 254 4.64e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1v1aA 309 4.64e+01 c.72.1.1 100249 1f5mA 180 4.65e+01 1f5mB d.110.2.1 40895 1qmgA 524 4.65e+01 1qmgA a.100.1.2,c.2.1.6 18785,30182 1tjyA 316 4.65e+01 c.93.1.1 107062 1obfO 335 4.68e+01 c.2.1.3,d.81.1.1 86768,86769 1tmy 120 4.72e+01 1dbwA c.23.1.1 31083 1vmoA 163 4.72e+01 1vmoA b.77.1.1 27974 2bkkA 264 4.73e+01 1iseA 185 4.73e+01 d.67.3.1 90691 1o57A 291 4.75e+01 a.4.5.40,c.61.1.1 92483,92484 1s29A 92 4.77e+01 a.4.5.46 98373 1vdwA 254 4.79e+01 e.7.1.1 100569 1fg7A 356 4.80e+01 1gewA c.67.1.1 59819 1px5A 349 4.80e+01 a.160.1.2,d.218.1.6 95277,95278 1bj7 156 4.87e+01 1bj7 b.60.1.1 27113 1w0mA 226 4.88e+01 c.1.1.1 109027 1pgl1 185 4.93e+01 1wp5A 323 4.94e+01 1iuqA 367 4.95e+01 c.112.1.1 90703 1xg5A 279 5.00e+01 1up7A 417 5.02e+01 1ovnA 248 5.03e+01 a.71.1.1,c.47.1.7 93602,93603 1ep3A 311 5.07e+01 2dorA c.1.4.1 28597 1kt6A 183 5.08e+01 b.60.1.1 84466 1wwtA 88 5.10e+01 1ugmA 125 5.14e+01 d.15.1.3 107827 2aexA 346 5.16e+01 1k8wA 327 5.21e+01 b.122.1.1,d.265.1.2 83094,90388 1pot 325 5.22e+01 1pot c.94.1.1 35807 1z0sA 278 5.23e+01 1qb5D 99 5.24e+01 b.40.2.1 88357 2ayuA 417 5.27e+01 1vyoA 128 5.27e+01 1kwmA 402 5.28e+01 c.56.5.1,d.58.3.1 73079,73080 1w2wB 191 5.30e+01 1kwaA 88 5.31e+01 1kwaA b.36.1.1 24772 1f00I 282 5.32e+01 1f00I b.1.14.1,b.1.14.1,d.169.1.3 22368,22369,42439 1ivyA 452 5.33e+01 1ivyA c.69.1.5 34654 1o7nB 194 5.35e+01 d.17.4.4 81164 1wo8A 126 5.38e+01 2gzqA 200 5.40e+01 1obbA 480 5.41e+01 c.2.1.5,d.162.1.2 86760,86761 1f2tA 149 5.41e+01 1f2tA c.37.1.12 32373 1r9jA 673 5.43e+01 1hztA 190 5.44e+01 1i9aA d.113.1.2 61459 1u0fA 564 5.44e+01 1uwzA 136 5.56e+01 c.97.1.1 108081 1di6A 195 5.60e+01 1di6A c.57.1.1 33863 1ml4A 308 5.62e+01 c.78.1.1,c.78.1.1 79255,79256 2aa4A 289 5.62e+01 1nkiA 135 5.62e+01 d.32.1.2 91941 1uayA 242 5.64e+01 c.2.1.2 88390 1reqA 727 5.69e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1u0sY 118 5.70e+01 c.23.1.1 107566 1u7eB 154 5.70e+01 1qipA 183 5.70e+01 1qipA d.32.1.1 38470 1b43A 340 5.76e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1q15A 503 5.78e+01 c.26.2.1,d.153.1.1 95538,95539 1lvaA 258 5.80e+01 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