# List of top-scoring protein chains for T0345.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f8aA 208 2.17e-37 1gp1A 198 4.32e-37 1gp1A c.47.1.10 33059 2gs3A 185 2.24e-34 1on4A 174 1.27e-14 c.47.1.10 93355 1xzoA 174 1.28e-14 1st9A 143 2.49e-11 c.47.1.10 98987 2f9sA 151 2.65e-11 1jfuA 186 1.89e-10 c.47.1.10 62940 1kngA 156 2.97e-06 c.47.1.10 72777 2cvbA 188 1.32e-05 2gqkA 173 5.65e-05 1wp0A 165 5.69e-05 2ggtA 164 6.05e-05 1z5yE 149 6.41e-05 1o73A 144 8.95e-05 c.47.1.10 86638 1xxuA 153 9.70e-05 1xvwA 160 9.75e-05 1oc9A 152 1.87e-04 c.47.1.10 86797 1qk8A 146 1.91e-04 1ewxA c.47.1.10 33061 1okdA 154 1.93e-04 c.47.1.10 93249 1ewxA 146 1.93e-04 1ewxA c.47.1.10 33062 1ezkA 153 1.94e-04 1ewxA c.47.1.10 33063 1o81A 152 2.07e-04 c.47.1.10 81175 1o6jA 150 2.08e-04 c.47.1.10 81089 1fg4A 149 2.11e-04 1ewxA c.47.1.10 59814 1xwaA 111 2.71e-04 1xwbA 106 3.00e-04 1t00A 112 6.79e-04 1o8xA 146 8.30e-04 c.47.1.10 86681 1thx 115 8.70e-04 1thx c.47.1.1 32732 1i5gA 144 1.10e-03 1ewxA c.47.1.10 61784 1wmjA 130 1.98e-03 2b5xA 148 2.29e-03 1qmvA 197 2.53e-03 1qq2A c.47.1.10 33066 1lu4A 136 2.89e-03 c.47.1.10 91124 2fy6A 143 4.19e-03 3trx 105 5.30e-03 1erv c.47.1.1 32757 2b7kA 200 5.66e-03 1ert 105 1.23e-02 1erv c.47.1.1 32744 1aiu 105 1.54e-02 1erv c.47.1.1 32746 1trs 105 1.54e-02 1erv c.47.1.1 32753 1erv 105 1.97e-02 1erv c.47.1.1 32743 1zzoA 136 2.43e-02 1e2yA 188 2.51e-02 1qq2A c.47.1.10 59173 1srx 108 3.83e-02 1thx c.47.1.1 32729 1zyeA 220 4.36e-02 2trxA 108 4.90e-02 1thx c.47.1.1 32719 1zzyA 108 5.23e-02 1we0A 187 5.68e-02 2tir 108 5.89e-02 1thx c.47.1.1 32721 2fchA 108 6.50e-02 1kebA 108 6.62e-02 c.47.1.1 77341 2cx4A 164 6.78e-02 1cqgA 105 7.50e-02 1erv c.47.1.1 32756 2fd3A 108 7.95e-02 1qq2A 199 1.14e-01 1qq2A c.47.1.10 33064 1r26A 125 1.39e-01 c.47.1.1 96847 2a4vA 159 1.53e-01 1f9mA 112 1.60e-01 1erv c.47.1.1 32736 1faaA 124 1.73e-01 1erv c.47.1.1 32738 1ep8A 112 2.38e-01 c.47.1.1 64907 1f6mC 108 2.63e-01 1thx c.47.1.1 32725 1ep7A 112 2.64e-01 c.47.1.1 64905 2cvkA 110 2.89e-01 2f51A 118 3.07e-01 1uulA 202 3.69e-01 1v98A 140 4.26e-01 1txxA 108 4.28e-01 1thx c.47.1.1 32724 1xccA 220 4.92e-01 2djjA 121 5.14e-01 1quwA 105 5.16e-01 1thx c.47.1.1 32735 1nw2A 105 5.47e-01 c.47.1.1 92215 1ti3A 113 5.88e-01 1pk1A 89 6.98e-01 1nswA 105 8.15e-01 c.47.1.1 92097 2d9hA 78 8.40e-01 1rqmA 105 8.58e-01 c.47.1.1 105068 2bmxA 195 9.76e-01 1m7tA 107 1.07e+00 c.47.1.1 78745 2cokA 113 1.07e+00 1fb6A 105 1.29e+00 1thx c.47.1.1 32739 1gl8A 104 1.30e+00 c.47.1.1 65290 1zcpA 108 1.34e+00 1erw 105 1.38e+00 1erv c.47.1.1 32745 1zofA 198 1.75e+00 1dbyA 107 1.76e+00 1thx c.47.1.1 32734 1x5cA 121 2.52e+00 1vhxA 150 2.61e+00 c.55.3.8 100712 1tho 109 3.13e+00 1thx c.47.1.1 32722 1eejA 216 3.27e+00 1eejA c.47.1.9,d.17.3.1 33057,38071 1xflA 124 3.68e+00 c.47.1.1 109586 1bvoA 175 3.77e+00 1a3qA b.2.5.3 22457 1qxhA 167 3.99e+00 c.47.1.10 96528 1syrA 112 4.11e+00 c.47.1.1 99028 2h01A 192 4.30e+00 1xjlA 319 4.47e+00 1w7bA 339 4.59e+00 1yf0A 186 5.61e+00 1y25A 165 5.88e+00 1kw4A 89 6.00e+00 a.60.1.2 73077 2bw0A 329 6.01e+00 1yf1A 186 6.37e+00 1psqA 163 6.52e+00 c.47.1.10 88283 1xvqA 175 6.55e+00 1yepA 186 6.70e+00 2b5eA 504 6.76e+00 1yexA 186 6.95e+00 2gglA 304 7.11e+00 2ggkA 304 7.11e+00 1fo6A 304 7.11e+00 1erzA d.160.1.2 59923 1w4vA 119 7.29e+00 1xypA 190 7.50e+00 1axkA b.29.1.11 24327 1mek 120 8.13e+00 1erv c.47.1.2 32775 1f74A 293 8.73e+00 1nal3 c.1.10.1 29079 1oz9A 150 9.33e+00 d.92.1.15 93808 1uf5A 303 9.66e+00 d.160.1.2 107808 1erzA 303 1.01e+01 1erzA d.160.1.2 59498 2c21A 144 1.14e+01 2cv4A 250 1.30e+01 1x0rA 249 1.30e+01 1te1B 190 1.31e+01 b.29.1.11 106791 1senA 164 1.32e+01 c.47.1.1 105465 1s1iU 126 1.33e+01 i.1.1.1 105195 1x6hA 86 1.73e+01 1ukz 203 1.74e+01 1zin c.37.1.1 31840 1zq1A 438 1.75e+01 1uc7A 125 1.80e+01 c.47.1.1 99163 1x42A 232 1.80e+01 2fwhA 134 1.84e+01 1xnd 190 2.07e+01 1axkA b.29.1.11 24321 2fgxA 107 2.09e+01 1gm6A 175 2.26e+01 b.60.1.1 70272 1hh1A 143 2.28e+01 1gefA c.52.1.18 61036 1x5dA 133 2.33e+01 1rz3A 201 2.38e+01 c.37.1.6 98132 1f1uA 323 2.52e+01 d.32.1.3,d.32.1.3 83200,83201 2bmaA 470 2.54e+01 1ni3A 392 2.58e+01 c.37.1.8,d.15.10.2 80531,80532 1v4bA 200 2.62e+01 1tikA 213 2.64e+01 c.23.5.3 107003 1a8l 226 2.69e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1dvh 79 2.79e+01 1c53 a.3.1.1 15802 1e08E 78 2.86e+01 i.4.1.1 45916 1rkqA 282 2.91e+01 c.108.1.10 97621 2bz6H 254 3.08e+01 1j08A 226 3.18e+01 c.47.1.2,c.47.1.2 83855,83856 1pmhX 185 3.19e+01 b.18.1.18 104193 1oikA 301 3.20e+01 b.82.2.5 93063 1ti8B 172 3.20e+01 1oazA 123 3.21e+01 c.47.1.1 92741 1zarA 282 3.22e+01 1fa0A 537 3.24e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1jzoA 216 3.24e+01 c.47.1.9,d.17.3.1 84267,84268 1vpqA 273 3.24e+01 1jzdA 220 3.24e+01 c.47.1.9,d.17.3.1 84257,84258 1xi7A 61 3.32e+01 1p3jA 217 3.37e+01 c.37.1.1,g.41.2.1 94022,94023 2chlA 351 3.37e+01 1oijC 301 3.51e+01 b.82.2.5 93061 2c27A 315 3.52e+01 1oihA 301 3.52e+01 b.82.2.5 93051 1p0hA 318 3.53e+01 d.108.1.1 93866 2a5lA 200 3.56e+01 1n8jA 186 3.60e+01 c.47.1.10 85401 1zwkA 207 3.61e+01 1wdrA 495 3.70e+01 1o6fA 710 3.91e+01 b.69.7.1,c.69.1.4 81085,81086 1o6gA 710 3.91e+01 b.69.7.1,c.69.1.4 81087,81088 1ei9A 279 3.91e+01 1ei9A c.69.1.13 34713 1h4lD 147 3.96e+01 a.74.1.1 70873 1h2wA 710 3.99e+01 b.69.7.1,c.69.1.4 76596,76597 1vz3A 710 3.99e+01 b.69.7.1,c.69.1.4 108947,108948 2dvh 79 4.00e+01 1c53 a.3.1.1 15803 1e8nA 710 4.01e+01 1qfmA b.69.7.1,c.69.1.4 27675,34643 1h2xA 710 4.06e+01 b.69.7.1,c.69.1.4 76598,76599 1e5tA 710 4.06e+01 1qfmA b.69.7.1,c.69.1.4 27676,34644 1xyn 178 4.07e+01 1axkA b.29.1.11 24322 2cb3A 175 4.21e+01 1w2b5 144 4.53e+01 2his 312 4.58e+01 1taxA c.1.8.3 28918 2a91A 517 4.66e+01 1lj9A 144 4.70e+01 a.4.5.28 78035 1u0kA 288 4.78e+01 d.21.1.2,d.21.1.2 107547,107548 1hgxA 183 5.04e+01 1tc1A c.61.1.1 34027 1z7pA 117 5.09e+01 5hpgA 84 5.10e+01 5hpgA g.14.1.1 44642 2c47A 313 5.18e+01 1wlsA 328 5.42e+01 2plc 274 5.64e+01 2plc c.1.18.2 29614 1vicA 262 5.76e+01 c.68.1.13 100756 1qvpA 87 5.77e+01 8rucI 123 5.85e+01 1rboC d.73.1.1 39629 1faoA 126 5.87e+01 1faoA b.55.1.1 26974 1vi4A 174 5.97e+01 c.8.7.1 100731 1aod 289 6.00e+01 2plc c.1.18.2 29615 1ir1S 123 6.01e+01 d.73.1.1 71290 1up4A 415 6.22e+01 1up6A 416 6.24e+01 c.2.1.5,d.162.1.2 107976,107977 1up7A 417 6.26e+01 1qw1A 121 6.30e+01 1bymA 97 6.41e+01 1bi0 b.34.1.2 24458 1ga6A 372 6.61e+01 1ga1A c.41.1.2 32556 1h1aA 191 6.70e+01 b.29.1.11 83450 1kdvA 370 6.74e+01 c.41.1.2 68486 1t5bA 201 6.76e+01 c.23.5.3 106433 1xnkA 196 6.84e+01 1nrwA 288 7.01e+01 c.108.1.10 86128 1wdqA 495 7.01e+01 1wdsA 495 7.03e+01 1hn4A 131 7.17e+01 a.133.1.2 65893 1ek0A 170 7.24e+01 1ctqA c.37.1.8 32076 1wbbA 800 7.36e+01 1c53 79 7.38e+01 1c53 a.3.1.1 15801 1wbdA 800 7.38e+01 1ng9A 800 7.39e+01 a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 80480,80481,80482,80483 1e3mA 800 7.40e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19075,32389,33746,39747 1wb9A 800 7.41e+01 1qzzA 374 7.42e+01 a.4.5.29,c.66.1.12 96719,96720 1unlD 208 7.42e+01 1uepA 103 7.76e+01 b.36.1.1 99270 1f54A 77 7.78e+01 a.39.1.5 83244 1uayA 242 7.82e+01 c.2.1.2 88390 1q6eA 495 7.85e+01 c.1.8.1 95972 1oaoC 729 7.88e+01 e.26.1.3 86746 1mjgM 729 7.88e+01 e.26.1.3 79204 1vig 71 7.92e+01 1vih d.51.1.1 38806 1ju2A 536 7.97e+01 c.3.1.2,d.16.1.1 77169,77170 2axtA 344 8.22e+01 1w5cA 360 8.24e+01 1w26A 432 8.30e+01 a.223.1.1,d.241.2.1,d.26.1.1 109085,109086,109087 1ufoA 238 8.35e+01 c.69.1.27 99344 2f2lX 167 8.44e+01 1vlmA 219 8.53e+01 c.66.1.41 108836 1e4fT 419 8.62e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 1izlA 360 8.65e+01 i.5.1.1 76994 1n8zC 607 8.66e+01 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 80322,80323,80324,80325 2f7fA 494 8.66e+01 1qj4A 257 8.80e+01 1qj4A c.69.1.20 34796 1sckA 257 8.87e+01 c.69.1.20 105421 1yb6A 256 8.90e+01