# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gp1A 198 3.30e-30 1gp1A c.47.1.10 33059 2f8aA 208 3.70e-30 1xzoA 174 7.84e-13 1st9A 143 2.77e-12 c.47.1.10 98987 2f9sA 151 4.74e-12 1jfuA 186 5.85e-10 c.47.1.10 62940 1kngA 156 5.62e-08 c.47.1.10 72777 2cvbA 188 3.90e-07 1z5yE 149 8.10e-07 1xvwA 160 1.16e-06 1lu4A 136 3.76e-06 c.47.1.10 91124 1qk8A 146 6.14e-06 1ewxA c.47.1.10 33061 2b7kA 200 9.03e-06 1o8xA 146 1.02e-05 c.47.1.10 86681 1zzoA 136 2.68e-05 1qmvA 197 3.28e-05 1qq2A c.47.1.10 33066 1i5gA 144 4.23e-05 1ewxA c.47.1.10 61784 2fy6A 143 5.74e-05 1t00A 112 7.32e-05 1zyeA 220 2.00e-04 1wmjA 130 3.73e-04 1thx 115 8.58e-04 1thx c.47.1.1 32732 1xccA 220 8.65e-04 2a4vA 159 2.15e-03 1erv 105 3.29e-03 1erv c.47.1.1 32743 1aiu 105 4.46e-03 1erv c.47.1.1 32746 2trxA 108 5.56e-03 1thx c.47.1.1 32719 2f51A 118 1.01e-02 1w4vA 119 1.30e-02 1qxhA 167 1.66e-02 c.47.1.10 96528 1fb6A 105 1.75e-02 1thx c.47.1.1 32739 1uvzA 119 1.76e-02 1f9mA 112 2.58e-02 1erv c.47.1.1 32736 1r26A 125 2.68e-02 c.47.1.1 96847 1nw2A 105 3.04e-02 c.47.1.1 92215 1faaA 124 3.49e-02 1erv c.47.1.1 32738 1xvqA 175 3.65e-02 1bvoA 175 4.51e-02 1a3qA b.2.5.3 22457 1nswA 105 5.05e-02 c.47.1.1 92097 1bzyA 217 5.37e-02 1qk3A c.61.1.1 34071 1n8jA 186 5.74e-02 c.47.1.10 85401 1r4aA 165 6.69e-02 c.37.1.8 96986 1x0rA 249 7.18e-02 1v98A 140 9.22e-02 1erw 105 9.98e-02 1erv c.47.1.1 32745 1uptA 171 1.17e-01 c.37.1.8 99767 1uptC 170 2.61e-01 c.37.1.8 99769 1kshA 186 3.47e-01 c.37.1.8 72914 1q98A 165 3.95e-01 c.47.1.10 96253 2his 312 4.63e-01 1taxA c.1.8.3 28918 1eejA 216 4.63e-01 1eejA c.47.1.9,d.17.3.1 33057,38071 1vs0A 310 4.64e-01 1z7gA 217 5.09e-01 1xhfA 123 5.31e-01 1lh0A 213 9.69e-01 c.61.1.1 73896 1hd2A 161 1.06e+00 c.47.1.10 60962 1zj6A 187 1.07e+00 2b5eA 504 1.16e+00 1vhxA 150 1.17e+00 c.55.3.8 100712 1vpqA 273 1.19e+00 1opr 213 1.25e+00 1opr c.61.1.1 34091 1oroA 213 1.29e+00 1opr c.61.1.1 34093 1cjbA 231 1.32e+00 1qk3A c.61.1.1 34079 1rz3A 201 1.57e+00 c.37.1.6 98132 2a5dA 175 1.75e+00 1fh9A 312 2.14e+00 1taxA c.1.8.3 28913 1erzA 303 2.23e+00 1erzA d.160.1.2 59498 1uc7A 125 2.24e+00 c.47.1.1 99163 2f9lA 199 2.26e+00 1w7bA 339 2.36e+00 1ek0A 170 2.65e+00 1ctqA c.37.1.8 32076 1fhdA 312 2.79e+00 1taxA c.1.8.3 28915 1senA 164 2.86e+00 c.47.1.1 105465 1a8y 367 2.94e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1qf9A 194 2.94e+00 1zin c.37.1.1 31848 1vlmA 219 3.10e+00 c.66.1.41 108836 2bw0A 329 3.58e+00 2akrA 285 3.66e+00 1t71A 281 3.85e+00 1y9zA 441 3.90e+00 5ukdA 194 3.98e+00 1zin c.37.1.1 31851 1t3bA 211 4.03e+00 c.47.1.9,d.17.3.1 106341,106342 1q0uA 219 4.60e+00 c.37.1.19 95512 1que 303 4.66e+00 1fnc b.43.4.2,c.25.1.1 25647,31537 1oixA 191 4.68e+00 2bsaA 303 4.71e+00 1w34A 304 4.93e+00 1gpjA 404 4.98e+00 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1xx6A 191 5.22e+00 1gu2A 124 5.22e+00 a.3.1.1 76348 2f7fA 494 5.28e+00 1yzfA 195 5.38e+00 1im8A 244 5.44e+00 c.66.1.14 66212 1v6cA 441 5.53e+00 1ogiA 303 5.72e+00 b.43.4.2,c.25.1.1 92914,92915 1uf5A 303 5.94e+00 d.160.1.2 107808 1go2A 304 6.25e+00 b.43.4.2,c.25.1.1 76243,76244 1fgs 428 6.39e+00 1fgs c.59.1.2,c.72.2.2 33959,34962 1fzqA 181 6.42e+00 1hurA c.37.1.8 32060 2cokA 113 6.74e+00 2bmeA 186 6.80e+00 1o5xA 248 7.37e+00 c.1.1.1 92528 1je5A 206 7.42e+00 1je5A b.40.4.7 62909 1lyxA 248 7.57e+00 c.1.1.1 78304 1pdz 434 7.73e+00 4enl c.1.11.1,d.54.1.1 29215,38859 2g6bA 180 7.80e+00 2erxA 172 8.03e+00 1g3qA 237 8.47e+00 1hyqA c.37.1.10 60237 1egaA 301 8.55e+00 1egaA c.37.1.8,d.52.3.1 32150,38836 1qfmA 710 9.06e+00 1qfmA b.69.7.1,c.69.1.4 27673,34641 1h2wA 710 9.67e+00 b.69.7.1,c.69.1.4 76596,76597 1ofuA 320 9.98e+00 c.32.1.1,d.79.2.1 86972,86973 1oivA 191 1.00e+01 c.37.1.8 93076 1o3yA 166 1.01e+01 c.37.1.8 86618 1lj9A 144 1.09e+01 a.4.5.28 78035 1mnaA 298 1.13e+01 c.69.1.22 79322 1r8sA 164 1.15e+01 c.37.1.8 97247 1xt8A 292 1.15e+01 1tz9A 367 1.17e+01 c.1.15.6 107466 2gh1A 301 1.18e+01 2erbA 125 1.20e+01 1vcdA 126 1.21e+01 1i7qB 193 1.21e+01 1qdlB c.23.16.1 61902 1f74A 293 1.23e+01 1nal3 c.1.10.1 29079 1wl8A 189 1.24e+01 1qusA 322 1.24e+01 1ltm d.2.1.6 36991 1lm8V 160 1.27e+01 b.3.3.1 74035 1tia 279 1.28e+01 3tgl c.69.1.17 34737 1usuA 260 1.29e+01 d.14.1.8 99885 1bjx 110 1.29e+01 1bjx c.47.1.2 32774 1tk9A 188 1.32e+01 c.80.1.3 107082 1y2kA 349 1.36e+01 1tc5A 194 1.38e+01 c.110.1.1 106752 1hgxA 183 1.38e+01 1tc1A c.61.1.1 34027 1enfA 212 1.38e+01 3seb b.40.2.2,d.15.6.1 25198,37787 1ve3A 227 1.39e+01 1yzqA 170 1.39e+01 1tm9A 137 1.44e+01 a.225.1.1 107150 1tjyA 316 1.45e+01 c.93.1.1 107062 1s0uA 408 1.45e+01 b.43.3.1,b.44.1.1,c.37.1.8 98302,98303,98304 1r7aA 504 1.47e+01 b.71.1.1,c.1.8.1 97192,97193 1tbbA 332 1.48e+01 a.211.1.2 106741 1xf1A 926 1.48e+01 2trcP 217 1.48e+01 1b9yC c.47.1.6 33051 1txuA 273 1.51e+01 a.222.1.1 107439 1tp9A 162 1.51e+01 1xdnA 277 1.61e+01 1mb3A 124 1.67e+01 c.23.1.1 78907 1f4pA 147 1.68e+01 5nul c.23.5.1 59651 1ufoA 238 1.69e+01 c.69.1.27 99344 1b9mA 265 1.70e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1b5qA 472 1.72e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1zmtA 254 1.82e+01 1kq3A 376 1.90e+01 e.22.1.2 68790 1eokA 290 1.91e+01 1eokA c.1.8.5 28991 2a0mA 316 1.91e+01 1rcf 169 1.93e+01 1rcf c.23.5.1 31170 1w4rA 195 2.00e+01 1jae 471 2.03e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1ojxA 263 2.07e+01 c.1.10.1 93164 1zmaA 118 2.07e+01 2plc 274 2.11e+01 2plc c.1.18.2 29614 1flcA 432 2.14e+01 1flcA b.19.1.3,c.23.10.2 23837,31337 1vjhA 122 2.16e+01 d.129.3.1 100811 1lmb3 92 2.16e+01 1lmb3 1mo7A 213 2.17e+01 d.220.1.1 85028 1ahxA 396 2.18e+01 1ajsA c.67.1.1 34293 1e4fT 419 2.19e+01 1e4fT c.55.1.1,c.55.1.1 33453,33454 1bu7A 455 2.25e+01 1bu7A a.104.1.1 18937 1ls1A 295 2.25e+01 a.24.13.1,c.37.1.10 78170,78171 1prxA 224 2.28e+01 1prxA c.47.1.10 33076 2axoA 270 2.29e+01 2eryA 172 2.29e+01 1srrA 124 2.31e+01 1dz3A c.23.1.1 31110 1o57A 291 2.33e+01 a.4.5.40,c.61.1.1 92483,92484 1zip 217 2.39e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1vk9A 151 2.40e+01 c.139.1.1 108640 1yhtA 367 2.41e+01 1uayA 242 2.41e+01 c.2.1.2 88390 1hurA 180 2.51e+01 1hurA c.37.1.8 32052 1m7bA 184 2.58e+01 c.37.1.8 74572 2aucA 126 2.60e+01 1mr3F 181 2.63e+01 c.37.1.8 79422 1wj7A 104 2.65e+01 1vcbC 160 2.69e+01 1vcbC b.3.3.1 22535 1ni3A 392 2.69e+01 c.37.1.8,d.15.10.2 80531,80532 1f6bA 198 2.70e+01 c.37.1.8 64986 1w0mA 226 2.80e+01 c.1.1.1 109027 1x42A 232 2.81e+01 1wpbA 172 2.84e+01 1xorA 349 2.87e+01 1oywA 523 2.92e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 3rabA 169 2.97e+01 1ctqA c.37.1.8 32018 1vdmA 153 3.01e+01 1z5lA 285 3.03e+01 1yc7A 124 3.11e+01 1q3iA 214 3.16e+01 d.220.1.1 104524 1oyeA 1049 3.17e+01 d.58.44.1,d.58.44.1,d.58.44.1,d.58.44.1,d.225.1.1,d.225.1.1,f.35.1.1,f.35.1.1 87587,87588,87589,87590,87591,87592,87593,87594 3cla 213 3.29e+01 3cla c.43.1.1 32610 1tikA 213 3.34e+01 c.23.5.3 107003 1kxu 333 3.39e+01 1jkw a.74.1.1,a.74.1.1 18358,18359 1y21A 282 3.48e+01 1u7pA 164 3.48e+01 1fsgA 233 3.48e+01 1qk3A c.61.1.1 34029 1r9jA 673 3.52e+01 1wzaA 488 3.53e+01 1yxyA 234 3.55e+01 2ng1 293 3.56e+01 1ng1 a.24.13.1,c.37.1.10 16962,32273 1t7lA 766 3.64e+01 1xi7A 61 3.66e+01 1amk 251 3.66e+01 1amk c.1.1.1 28503 2b9wA 424 3.75e+01 1t5bA 201 3.80e+01 c.23.5.3 106433 1zin 217 3.85e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1o6dA 163 3.92e+01 c.116.1.3 92567 1q77A 138 4.00e+01 c.26.2.4 96023 1iq4A 179 4.08e+01 1iq4A d.77.1.1 62641 1i1qB 192 4.08e+01 1qdlB c.23.16.1 61544 1gdeA 389 4.12e+01 c.67.1.1 60456 1xclA 235 4.14e+01 2a4hA 126 4.16e+01 1szwA 379 4.21e+01 d.265.1.4 99047 1ltqA 301 4.22e+01 c.108.1.9,c.37.1.1 78208,78209 1e2wA 251 4.23e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 2aw4P 114 4.31e+01 1dcfA 136 4.34e+01 1dcfA c.23.1.2 31124 1wzcA 249 4.34e+01 1zklA 353 4.36e+01 1pwxA 254 4.39e+01 c.2.1.2 95262 1up6A 416 4.41e+01 c.2.1.5,d.162.1.2 107976,107977 1sctB 151 4.42e+01 3sdhA a.1.1.2 15003 2f2hA 773 4.43e+01 1xm7A 195 4.45e+01 1up7A 417 4.50e+01 8rucI 123 4.56e+01 1rboC d.73.1.1 39629 1qisA 396 4.58e+01 1ajsA c.67.1.1 34284 1e6wA 260 4.63e+01 1e6wA c.2.1.2 59326 1ars 396 4.67e+01 1ajsA c.67.1.1 34287 1xw8A 252 4.68e+01 6mhtA 327 4.74e+01 6mhtA c.66.1.26 34226 2bznA 351 4.76e+01 1si6X 282 4.77e+01 1n55A 251 4.80e+01 c.1.1.1 80007 1xk4C 113 4.83e+01 1fnc 314 4.83e+01 1fnc b.43.4.2,c.25.1.1 25627,31517 1jqeA 292 4.86e+01 c.66.1.19 71789 1jflA 228 4.96e+01 c.78.2.1,c.78.2.1 71656,71657 1nu0A 138 5.04e+01 c.55.3.8 92165 1xsjA 778 5.05e+01 1eceA 358 5.05e+01 1eceA c.1.8.3 28813 1bx1A 314 5.15e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1ylmA 144 5.17e+01 1a76 326 5.30e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1f0jA 377 5.41e+01 1f0jA a.211.1.2 19346 1wcdJ 441 5.42e+01 1xc3A 302 5.43e+01 1vicA 262 5.48e+01 c.68.1.13 100756 1wh5A 80 5.50e+01 2fexA 188 5.53e+01 1qycA 308 5.54e+01 c.2.1.2 96581 1nfkA 325 5.61e+01 1a3qA b.1.18.1,b.2.5.3 21929,22444 1qfeA 252 5.66e+01 1qfeA c.1.10.1 29167 1ox6A 555 5.70e+01 c.1.2.1,c.23.16.1 87505,87506 1pg5A 299 5.72e+01 c.78.1.1,c.78.1.1 104146,104147 1lm4A 194 5.76e+01 d.167.1.1 84626 1m2xA 223 5.78e+01 d.157.1.1 84764 1yf3A 259 5.80e+01 1vsrA 136 5.81e+01 1vsrA c.52.1.15 33332 1sxjE 354 5.81e+01 a.80.1.1,c.37.1.20 106089,106090 2aa4A 289 5.81e+01 1tx4A 198 5.88e+01 1tx4A a.116.1.1 19098 1zcoA 262 5.88e+01 2aclB 244 5.90e+01 1a0rP 245 5.93e+01 1b9yC c.47.1.6 33054 1u11A 182 5.95e+01 c.23.8.1 107576 1oj5A 132 6.01e+01 d.110.3.8 93087 1hxhA 253 6.08e+01 c.2.1.2 76725 1h80A 464 6.11e+01 b.80.1.8 65714 1hm6A 346 6.11e+01 1avc a.65.1.1 18147 1fnd 314 6.14e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1htrB 329 6.17e+01 1smrA 1p3jA 217 6.20e+01 c.37.1.1,g.41.2.1 94022,94023 1ei5A 520 6.30e+01 1ei5A b.61.3.1,b.61.3.1,e.3.1.1 27418,27419,42772 1xmpA 170 6.37e+01 1n82A 331 6.44e+01 c.1.8.3 91703 1bykA 255 6.52e+01 1bykA c.93.1.1 35706 1e0wA 313 6.54e+01 1taxA c.1.8.3 59150 1z7dA 433 6.57e+01 1lnzA 342 6.59e+01 b.117.1.1,c.37.1.8 78112,78113 2gf6A 135 6.60e+01 1p5fA 189 6.62e+01 c.23.16.2 94142 1afp 51 6.63e+01 1afp g.26.1.1 44947 1h1yA 228 6.65e+01 c.1.2.2 76506 1e6oL 212 6.68e+01 32c2A b.1.1.1,b.1.1.2 20494,21452 1i3zA 103 6.69e+01 d.93.1.1 83667 1j31A 262 6.70e+01 d.160.1.2 90808 1dk8A 147 6.71e+01 1agrE a.91.1.1 18548 1bymA 97 6.73e+01 1bi0 b.34.1.2 24458 2basA 431 6.87e+01 2c6qA 351 6.92e+01 1oz9A 150 6.97e+01 d.92.1.15 93808 1wddS 128 6.99e+01 1es9A 232 6.99e+01 1wab c.23.10.3 31340 1bn7A 294 7.00e+01 1bn6A c.69.1.8 34677 1uacH 114 7.12e+01 b.1.1.1 99132 1xklA 273 7.17e+01 1tv8A 340 7.30e+01 c.1.28.3 107352 1zrn 232 7.39e+01 1qq5A c.108.1.1 43323 1huqA 164 7.51e+01 1byuA c.37.1.8 32020 1oihA 301 7.51e+01 b.82.2.5 93051 1yvoA 172 7.57e+01 2czrA 226 7.57e+01 2b0aA 186 7.59e+01 1ir21 140 7.59e+01 1o4sA 389 7.60e+01 c.67.1.1 86620 1m2dA 110 7.60e+01 c.47.1.11 78476 1y80A 210 7.62e+01 1q87A 221 7.67e+01 e.47.1.1 96192 1qbgA 272 7.70e+01 1d4aA c.23.5.3 31227 2b0cA 206 7.73e+01 1qo2A 241 7.82e+01 1qo2A c.1.2.1 28533 2as0A 396 7.92e+01 1et0A 269 7.92e+01 1et0A e.17.1.1 43289 1zmbA 290 7.97e+01 2bzoB 79 8.01e+01 1lwjA 441 8.05e+01 b.71.1.1,c.1.8.1 74303,74304 1gg1A 350 8.07e+01 1qr7A c.1.10.4 29187 1t9xA 1049 8.07e+01 1qsgA 265 8.08e+01 1eny c.2.1.2 29935 1xedA 117 8.09e+01 1zd9A 188 8.12e+01 2gaeA 346 8.13e+01 1i2kA 269 8.14e+01 e.17.1.1 90661 1vlwA 217 8.26e+01 c.1.10.1 108868 1zx0A 236 8.29e+01 1tl9A 339 8.36e+01 1jetA 517 8.37e+01 1jevA c.94.1.1 35718 1v77A 212 8.37e+01 c.6.3.2 108402 1wy7A 207 8.38e+01 1rg9A 383 8.41e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 2cdpA 160 8.42e+01 1s3iA 310 8.48e+01 b.46.1.1,c.65.1.1 98435,98436 1sqrA 95 8.49e+01 1y6zA 263 8.55e+01 1gk8I 140 8.56e+01 d.73.1.1 65242 1wab 232 8.58e+01 1wab c.23.10.3 31341 1wa3A 205 8.63e+01 2c7pA 327 8.65e+01 1kq1A 77 8.67e+01 b.38.1.2 72848 1ea9C 583 8.67e+01 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1kte 105 8.70e+01 1kte c.47.1.1 32771 1vjoA 393 8.70e+01 c.67.1.3 100827 1w8sA 263 8.80e+01 1co6A 107 8.87e+01 1ycc a.3.1.1 15894 1ag9A 175 8.91e+01 1rcf c.23.5.1 31178 1ka9H 200 8.91e+01 c.23.16.1 77308 1xwtA 405 8.92e+01 2fqxA 318 8.97e+01 1wmbA 260 8.99e+01