Best Alignments for T0344

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1z47A/T0344-1z47A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1z47A/T0344-1z47A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1376e+002.28e-09
1fobA/T0344-1fobA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fobA/T0344-1fobA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5415e+004.24e-06 c.1.8.3
1l2tA/T0344-1l2tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1l2tA/T0344-1l2tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2088e+008.87e-09 c.37.1.12
2b99A/T0344-2b99A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b99A/T0344-2b99A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6669e+002.53e-04
1c9kA/T0344-1c9kA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1c9kA/T0344-1c9kA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1665e+001.87e-09 1c9kB c.37.1.11
1mb3A/T0344-1mb3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1mb3A/T0344-1mb3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3890e+009.89e-05 c.23.1.1
1h61A/T0344-1h61A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1h61A/T0344-1h61A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.5173e+001.24e-06 1oyc c.1.4.1
1nge/1ba1-T0344-fssp-local-adpstyle5.a2m 1nge/1ba1-T0344-fssp-local-adpstyle5.al 4.3572e+004.88e+03 1ba1 c.55.1.1
c.55.1.1
1jf8A/T0344-1jf8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jf8A/T0344-1jf8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.1261e+001.14e+01 c.44.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001